Mercurial > repos > galaxyp > openms_msfraggeradapter

diff MSFraggerAdapter.xml @ 1:5a9c3e827da5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f5fcdd54599554099fb00b1973cc91a766ad246a"
author galaxyp
date Wed, 23 Sep 2020 15:01:51 +0000
parents 52a0856534d9
children 6bcc338b9dc6
line wrap: on
line diff
--- a/MSFraggerAdapter.xml	Wed Sep 09 12:48:23 2020 +0000
+++ b/MSFraggerAdapter.xml	Wed Sep 23 15:01:51 2020 +0000
@@ -89,19 +89,23 @@
     </section>
     <section name="digest" title="In-Silico Digestion Parameters" help="" expanded="false">
       <param name="search_enzyme_name" argument="-digest:search_enzyme_name" type="select" optional="false" label="Name of the enzyme to be written to the pepXML file" help="">
-        <option value="Glu-C+P">Glu-C+P</option>
         <option value="PepsinA + P">PepsinA + P</option>
         <option value="cyanogen-bromide">cyanogen-bromide</option>
         <option value="Clostripain/P">Clostripain/P</option>
         <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option>
         <option value="no cleavage">no cleavage</option>
         <option value="unspecific cleavage">unspecific cleavage</option>
+        <option value="leukocyte elastase">leukocyte elastase</option>
+        <option value="proline endopeptidase">proline endopeptidase</option>
+        <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
+        <option value="Alpha-lytic protease">Alpha-lytic protease</option>
         <option value="2-iodobenzoate">2-iodobenzoate</option>
         <option value="iodosobenzoate">iodosobenzoate</option>
         <option value="staphylococcal protease/D">staphylococcal protease/D</option>
         <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
-        <option value="V8-E">V8-E</option>
-        <option value="leukocyte elastase">leukocyte elastase</option>
+        <option value="Glu-C+P">Glu-C+P</option>
+        <option value="Lys-C/P">Lys-C/P</option>
+        <option value="PepsinA">PepsinA</option>
         <option value="Arg-C">Arg-C</option>
         <option value="Arg-C/P">Arg-C/P</option>
         <option value="Asp-N">Asp-N</option>
@@ -113,14 +117,10 @@
         <option value="Formic_acid">Formic_acid</option>
         <option value="Lys-C">Lys-C</option>
         <option value="Lys-N">Lys-N</option>
-        <option value="Lys-C/P">Lys-C/P</option>
-        <option value="PepsinA">PepsinA</option>
         <option value="TrypChymo">TrypChymo</option>
         <option value="Trypsin/P">Trypsin/P</option>
         <option value="V8-DE">V8-DE</option>
-        <option value="proline endopeptidase">proline endopeptidase</option>
-        <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
-        <option value="Alpha-lytic protease">Alpha-lytic protease</option>
+        <option value="V8-E">V8-E</option>
         <option value="Trypsin" selected="true">Trypsin</option>
         <expand macro="list_string_san"/>
       </param>
@@ -250,8 +250,6 @@
     <expand macro="manutest_MSFraggerAdapter"/>
   </tests>
   <help><![CDATA[Peptide Identification with MSFragger
-
-
-For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_MSFraggerAdapter.html]]></help>
+]]></help>
   <expand macro="references"/>
 </tool>