comparison MSGFPlusAdapter.xml @ 8:1ed1f9f53857 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

7:f0761deada39

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
<command><![CDATA[

 ## check input file type
 #set $in_type = $param_in.ext

 ## create the symlinks to set the proper file extension, since msgf uses them to choose how to handle the input files

    <data name="param_mzid_out" format="mzid" label=" ${tool.name} on ${on_string}: mzid"/>
  </outputs>
  <help>MS/MS database search using MS-GF+.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MSGFPlusAdapter.html</help>
</tool>

8:1ed1f9f53857

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
<command detect_errors="aggressive"><![CDATA[

 ## check input file type
 #set $in_type = $param_in.ext

 ## create the symlinks to set the proper file extension, since msgf uses them to choose how to handle the input files

    <data name="param_mzid_out" format="mzid" label=" ${tool.name} on ${on_string}: mzid"/>
  </outputs>
  <help>MS/MS database search using MS-GF+.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MSGFPlusAdapter.html</help>
</tool>