Mercurial > repos > galaxyp > openms_msgfplusadapter
changeset 0:2b2a7551a857 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:53:06 -0500 |
| parents | |
| children | c70264573191 |
| files | MSGFPlusAdapter.xml SKIP_TOOLS_FILE.txt datatypes_conf.xml filetypes.txt macros.xml readme.md repository_dependencies.xml test-data/DecoyDatabase_input.fasta test-data/DecoyDatabase_output.fasta tool.conf |
| diffstat | 10 files changed, 4202 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/MSGFPlusAdapter.xml Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,3391 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [Identification]--> +<tool id="MSGFPlusAdapter" name="MSGFPlusAdapter" version="2.1.0"> + <description>MS/MS database search using MS-GF+.</description> + <macros> + <token name="@EXECUTABLE@">MSGFPlusAdapter</token> + <import>macros.xml</import> + </macros> + <expand macro="references"/> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command><![CDATA[ + +## check input file type +#set $in_type = $param_in.ext + +## create the symlinks to set the proper file extension, since msgf uses them to choose how to handle the input files +ln -s '$param_in' 'param_in.${in_type}' && +ln -s '$param_database' param_database.fasta && +## find location of the MSGFPlus.jar file of the msgf_plus conda package +MSGF_JAR=\$(msgf_plus -get_jar_path) && + +MSGFPlusAdapter +-executable \$MSGF_JAR +#if $param_in: + -in 'param_in.${in_type}' +#end if +#if $param_out: + -out $param_out +#end if +#if $param_mzid_out: + -mzid_out $param_mzid_out +#end if +#if $param_database: + -database param_database.fasta +#end if +#if $param_add_decoys: + -add_decoys +#end if +#if $param_precursor_mass_tolerance: + -precursor_mass_tolerance $param_precursor_mass_tolerance +#end if +#if $param_precursor_error_units: + -precursor_error_units $param_precursor_error_units +#end if +#if $param_isotope_error_range: + -isotope_error_range "$param_isotope_error_range" +#end if +#if $param_fragment_method: + -fragment_method $param_fragment_method +#end if +#if $param_instrument: + -instrument $param_instrument +#end if +#if $param_enzyme: + -enzyme $param_enzyme +#end if +#if $param_protocol: + -protocol $param_protocol +#end if +#if $param_tryptic: + -tryptic $param_tryptic +#end if +#if $param_min_precursor_charge: + -min_precursor_charge $param_min_precursor_charge +#end if +#if $param_max_precursor_charge: + -max_precursor_charge $param_max_precursor_charge +#end if +#if $param_min_peptide_length: + -min_peptide_length $param_min_peptide_length +#end if +#if $param_max_peptide_length: + -max_peptide_length $param_max_peptide_length +#end if +#if $param_matches_per_spec: + -matches_per_spec $param_matches_per_spec +#end if +#if $param_add_features: + -add_features +#end if +#if $param_max_mods: + -max_mods $param_max_mods +#end if + +#if $rep_param_fixed_modifications: +-fixed_modifications + #for token in $rep_param_fixed_modifications: + #if " " in str(token): + "$token.param_fixed_modifications" + #else + $token.param_fixed_modifications + #end if + #end for +#end if + +#if $rep_param_variable_modifications: +-variable_modifications + #for token in $rep_param_variable_modifications: + #if " " in str(token): + "$token.param_variable_modifications" + #else + $token.param_variable_modifications + #end if + #end for +#end if +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_legacy_conversion: + -legacy_conversion +#end if + #if $adv_opts.param_force: + -force +#end if +#end if +]]> +</command> + <inputs> + <param name="param_in" type="data" format="mzxml,mgf,mzml" optional="False" label="Input file (MS-GF+ parameter '-s')" help="(-in) "/> + <param name="param_database" type="data" format="fasta" optional="False" label="Protein sequence database (FASTA file; MS-GF+ parameter '-d')" help="(-database) Non-existing relative filenames are looked up via 'OpenMS.ini:id_db_dir'"/> + <param name="param_add_decoys" display="radio" type="boolean" truevalue="-add_decoys" falsevalue="" checked="false" optional="True" label="Create decoy proteins (reversed sequences) and append them to the database for the search (MS-GF+ parameter '-tda')" help="(-add_decoys) This allows the calculation of FDRs, but should only be used if the database does not already contain decoys"/> + <param name="param_precursor_mass_tolerance" type="float" value="20.0" label="Precursor monoisotopic mass tolerance (MS-GF+ parameter '-t')" help="(-precursor_mass_tolerance) "/> + <param name="param_precursor_error_units" display="radio" type="select" optional="False" value="ppm" label="Unit of precursor mass tolerance (MS-GF+ parameter '-t')" help="(-precursor_error_units) "> + <option value="Da">Da</option> + <option value="ppm" selected="true">ppm</option> + </param> + <param name="param_isotope_error_range" type="text" size="30" value="0,1" label="Range of allowed isotope peak errors (MS-GF+ parameter '-ti')" help="(-isotope_error_range) Takes into account the error introduced by choosing a non-monoisotopic peak for fragmentation. Combined with 'precursor_mass_tolerance'/'precursor_error_units', this determines the actual precursor mass tolerance. E.g. for experimental mass 'exp' and calculated mass 'calc', '-precursor_mass_tolerance 20 -precursor_error_units ppm -isotope_error_range -1,2' tests '|exp - calc - n * 1.00335 Da| < 20 ppm' for n = -1, 0, 1, 2"> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + <remove value="""/> + </valid> + </sanitizer> + </param> + <param name="param_fragment_method" display="radio" type="select" optional="False" value="from_spectrum" label="Fragmentation method ('from_spectrum' relies on spectrum meta data and uses CID as fallback option; MS-GF+ parameter '-m')" help="(-fragment_method) "> + <option value="from_spectrum" selected="true">from_spectrum</option> + <option value="CID">CID</option> + <option value="ETD">ETD</option> + <option value="HCD">HCD</option> + </param> + <param name="param_instrument" display="radio" type="select" optional="False" value="low_res" label="Instrument that generated the data ('low_res'/'high_res' refer to LCQ and LTQ instruments; MS-GF+ parameter '-inst')" help="(-instrument) "> + <option value="low_res" selected="true">low_res</option> + <option value="high_res">high_res</option> + <option value="TOF">TOF</option> + <option value="Q_Exactive">Q_Exactive</option> + </param> + <param name="param_enzyme" type="select" optional="False" value="trypsin" label="Enzyme used for digestion, or type of cleavage (MS-GF+ parameter '-e')" help="(-enzyme) "> + <option value="unspecific">unspecific</option> + <option value="trypsin" selected="true">trypsin</option> + <option value="chymotrypsin">chymotrypsin</option> + <option value="LysC">LysC</option> + <option value="LysN">LysN</option> + <option value="GluC">GluC</option> + <option value="ArgC">ArgC</option> + <option value="AspN">AspN</option> + <option value="alphaLP">alphaLP</option> + <option value="no_cleavage">no_cleavage</option> + </param> + <param name="param_protocol" type="select" optional="False" value="none" label="Labeling or enrichment protocol used, if any (MS-GF+ parameter '-p')" help="(-protocol) "> + <option value="none" selected="true">none</option> + <option value="phospho">phospho</option> + <option value="iTRAQ">iTRAQ</option> + <option value="iTRAQ_phospho">iTRAQ_phospho</option> + <option value="TMT">TMT</option> + </param> + <param name="param_tryptic" display="radio" type="select" optional="False" value="fully" label="Level of cleavage specificity required (MS-GF+ parameter '-ntt')" help="(-tryptic) "> + <option value="non">non</option> + <option value="semi">semi</option> + <option value="fully" selected="true">fully</option> + </param> + <param name="param_min_precursor_charge" type="integer" min="1" optional="True" value="2" label="Minimum precursor ion charge (only used for spectra without charge information; MS-GF+ parameter '-minCharge')" help="(-min_precursor_charge) "/> + <param name="param_max_precursor_charge" type="integer" min="1" optional="True" value="3" label="Maximum precursor ion charge (only used for spectra without charge information; MS-GF+ parameter '-maxCharge')" help="(-max_precursor_charge) "/> + <param name="param_min_peptide_length" type="integer" min="1" optional="True" value="6" label="Minimum peptide length to consider (MS-GF+ parameter '-minLength')" help="(-min_peptide_length) "/> + <param name="param_max_peptide_length" type="integer" min="1" optional="True" value="40" label="Maximum peptide length to consider (MS-GF+ parameter '-maxLength')" help="(-max_peptide_length) "/> + <param name="param_matches_per_spec" type="integer" min="1" optional="True" value="1" label="Number of matches per spectrum to be reported (MS-GF+ parameter '-n')" help="(-matches_per_spec) "/> + <param name="param_add_features" display="radio" type="boolean" truevalue="-add_features" falsevalue="" checked="false" optional="True" label="Output additional features - needed" help="(-add_features) e.g. by Percolator (default: basic scores only; MS-GF+ parameter '-addFeatures')"/> + <param name="param_max_mods" type="integer" min="0" optional="True" value="2" label="Maximum number of modifications per peptide" help="(-max_mods) If this value is large, the search may take very long"/> + <repeat name="rep_param_fixed_modifications" min="0" max="1" title="param_fixed_modifications"> + <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using UniMod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)'"> + <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> + <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> + <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> + <option value="2-succinyl (C)">2-succinyl (C)</option> + <option value="2HPG (R)">2HPG (R)</option> + <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> + <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> + <option value="3sulfo (N-term)">3sulfo (N-term)</option> + <option value="4-ONE (C)">4-ONE (C)</option> + <option value="4-ONE (H)">4-ONE (H)</option> + <option value="4-ONE (K)">4-ONE (K)</option> + <option value="4-ONE+Delta:H(-2)O(-1) (C)">4-ONE+Delta:H(-2)O(-1) (C)</option> + <option value="4-ONE+Delta:H(-2)O(-1) (H)">4-ONE+Delta:H(-2)O(-1) (H)</option> + <option value="4-ONE+Delta:H(-2)O(-1) (K)">4-ONE+Delta:H(-2)O(-1) (K)</option> + <option value="4AcAllylGal (C)">4AcAllylGal (C)</option> + <option value="ADP-Ribosyl (C)">ADP-Ribosyl (C)</option> + <option value="ADP-Ribosyl (D)">ADP-Ribosyl (D)</option> + <option value="ADP-Ribosyl (E)">ADP-Ribosyl (E)</option> + <option value="ADP-Ribosyl (K)">ADP-Ribosyl (K)</option> + <option value="ADP-Ribosyl (N)">ADP-Ribosyl (N)</option> + <option value="ADP-Ribosyl (R)">ADP-Ribosyl (R)</option> + <option value="ADP-Ribosyl (S)">ADP-Ribosyl (S)</option> + <option value="AEBS (H)">AEBS (H)</option> + <option value="AEBS (K)">AEBS (K)</option> + <option value="AEBS (S)">AEBS (S)</option> + <option value="AEBS (Y)">AEBS (Y)</option> + <option value="AEC-MAEC (S)">AEC-MAEC (S)</option> + <option value="AEC-MAEC (T)">AEC-MAEC (T)</option> + <option value="AEC-MAEC:2H(4) (S)">AEC-MAEC:2H(4) (S)</option> + <option value="AEC-MAEC:2H(4) (T)">AEC-MAEC:2H(4) (T)</option> + <option value="AHA-Alkyne (M)">AHA-Alkyne (M)</option> + <option value="AHA-Alkyne-KDDDD (M)">AHA-Alkyne-KDDDD (M)</option> + <option value="AHA-SS (M)">AHA-SS (M)</option> + <option value="AHA-SS_CAM (M)">AHA-SS_CAM (M)</option> + <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> + <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> + <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> + <option value="AROD (C)">AROD (C)</option> + <option value="AccQTag (K)">AccQTag (K)</option> + <option value="AccQTag (N-term)">AccQTag (N-term)</option> + <option value="Acetyl (C)">Acetyl (C)</option> + <option value="Acetyl (H)">Acetyl (H)</option> + <option value="Acetyl (K)">Acetyl (K)</option> + <option value="Acetyl (N-term)">Acetyl (N-term)</option> + <option value="Acetyl (S)">Acetyl (S)</option> + <option value="Acetyl (T)">Acetyl (T)</option> + <option value="Acetyl (Y)">Acetyl (Y)</option> + <option value="Acetyl:13C(2) (K)">Acetyl:13C(2) (K)</option> + <option value="Acetyl:2H(3) (H)">Acetyl:2H(3) (H)</option> + <option value="Acetyl:2H(3) (K)">Acetyl:2H(3) (K)</option> + <option value="Acetyl:2H(3) (N-term)">Acetyl:2H(3) (N-term)</option> + <option value="Acetyl:2H(3) (S)">Acetyl:2H(3) (S)</option> + <option value="Acetyl:2H(3) (T)">Acetyl:2H(3) (T)</option> + <option value="Acetyl:2H(3) (Y)">Acetyl:2H(3) (Y)</option> + <option value="Acetyldeoxyhypusine (K)">Acetyldeoxyhypusine (K)</option> + <option value="Acetylhypusine (K)">Acetylhypusine (K)</option> + <option value="Ahx2+Hsl (C-term)">Ahx2+Hsl (C-term)</option> + <option value="Ala->Arg (A)">Ala->Arg (A)</option> + <option value="Ala->Asn (A)">Ala->Asn (A)</option> + <option value="Ala->Asp (A)">Ala->Asp (A)</option> + <option value="Ala->Cys (A)">Ala->Cys (A)</option> + <option value="Ala->Gln (A)">Ala->Gln (A)</option> + <option value="Ala->Glu (A)">Ala->Glu (A)</option> + <option value="Ala->Gly (A)">Ala->Gly (A)</option> + <option value="Ala->His (A)">Ala->His (A)</option> + <option value="Ala->Lys (A)">Ala->Lys (A)</option> + <option value="Ala->Met (A)">Ala->Met (A)</option> + <option value="Ala->Phe (A)">Ala->Phe (A)</option> + <option value="Ala->Pro (A)">Ala->Pro (A)</option> + <option value="Ala->Ser (A)">Ala->Ser (A)</option> + <option value="Ala->Thr (A)">Ala->Thr (A)</option> + <option value="Ala->Trp (A)">Ala->Trp (A)</option> + <option value="Ala->Tyr (A)">Ala->Tyr (A)</option> + <option value="Ala->Val (A)">Ala->Val (A)</option> + <option value="Ala->Xle (A)">Ala->Xle (A)</option> + <option value="Amidated (C-term)">Amidated (C-term)</option> + <option value="Amidine (K)">Amidine (K)</option> + <option value="Amidine (N-term)">Amidine (N-term)</option> + <option value="Amidino (C)">Amidino (C)</option> + <option value="Amino (Y)">Amino (Y)</option> + <option value="Ammonia-loss (N)">Ammonia-loss (N)</option> + <option value="Ammonia-loss (N-term C)">Ammonia-loss (N-term C)</option> + <option value="Ammonium (C-term)">Ammonium (C-term)</option> + <option value="Ammonium (D)">Ammonium (D)</option> + <option value="Ammonium (E)">Ammonium (E)</option> + <option value="Archaeol (C)">Archaeol (C)</option> + <option value="Arg (N-term)">Arg (N-term)</option> + <option value="Arg->Ala (R)">Arg->Ala (R)</option> + <option value="Arg->Asn (R)">Arg->Asn (R)</option> + <option value="Arg->Asp (R)">Arg->Asp (R)</option> + <option value="Arg->Cys (R)">Arg->Cys (R)</option> + <option value="Arg->Gln (R)">Arg->Gln (R)</option> + <option value="Arg->Glu (R)">Arg->Glu (R)</option> + <option value="Arg->GluSA (R)">Arg->GluSA (R)</option> + <option value="Arg->Gly (R)">Arg->Gly (R)</option> + <option value="Arg->His (R)">Arg->His (R)</option> + <option value="Arg->Lys (R)">Arg->Lys (R)</option> + <option value="Arg->Met (R)">Arg->Met (R)</option> + <option value="Arg->Npo (R)">Arg->Npo (R)</option> + <option value="Arg->Orn (R)">Arg->Orn (R)</option> + <option value="Arg->Phe (R)">Arg->Phe (R)</option> + <option value="Arg->Pro (R)">Arg->Pro (R)</option> + <option value="Arg->Ser (R)">Arg->Ser (R)</option> + <option value="Arg->Thr (R)">Arg->Thr (R)</option> + <option value="Arg->Trp (R)">Arg->Trp (R)</option> + <option value="Arg->Tyr (R)">Arg->Tyr (R)</option> + <option value="Arg->Val (R)">Arg->Val (R)</option> + <option value="Arg->Xle (R)">Arg->Xle (R)</option> + <option value="Arg-loss (C-term R)">Arg-loss (C-term R)</option> + <option value="Arg2PG (R)">Arg2PG (R)</option> + <option value="Argbiotinhydrazide (R)">Argbiotinhydrazide (R)</option> + <option value="Asn->Ala (N)">Asn->Ala (N)</option> + <option value="Asn->Arg (N)">Asn->Arg (N)</option> + <option value="Asn->Asp (N)">Asn->Asp (N)</option> + <option value="Asn->Cys (N)">Asn->Cys (N)</option> + <option value="Asn->Gln (N)">Asn->Gln (N)</option> + <option value="Asn->Glu (N)">Asn->Glu (N)</option> + <option value="Asn->Gly (N)">Asn->Gly (N)</option> + <option value="Asn->His (N)">Asn->His (N)</option> + <option value="Asn->Lys (N)">Asn->Lys (N)</option> + <option value="Asn->Met (N)">Asn->Met (N)</option> + <option value="Asn->Phe (N)">Asn->Phe (N)</option> + <option value="Asn->Pro (N)">Asn->Pro (N)</option> + <option value="Asn->Ser (N)">Asn->Ser (N)</option> + <option value="Asn->Thr (N)">Asn->Thr (N)</option> + <option value="Asn->Trp (N)">Asn->Trp (N)</option> + <option value="Asn->Tyr (N)">Asn->Tyr (N)</option> + <option value="Asn->Val (N)">Asn->Val (N)</option> + <option value="Asn->Xle (N)">Asn->Xle (N)</option> + <option value="Asp->Ala (D)">Asp->Ala (D)</option> + <option value="Asp->Arg (D)">Asp->Arg (D)</option> + <option value="Asp->Asn (D)">Asp->Asn (D)</option> + <option value="Asp->Cys (D)">Asp->Cys (D)</option> + <option value="Asp->Gln (D)">Asp->Gln (D)</option> + <option value="Asp->Glu (D)">Asp->Glu (D)</option> + <option value="Asp->Gly (D)">Asp->Gly (D)</option> + <option value="Asp->His (D)">Asp->His (D)</option> + <option value="Asp->Lys (D)">Asp->Lys (D)</option> + <option value="Asp->Met (D)">Asp->Met (D)</option> + <option value="Asp->Phe (D)">Asp->Phe (D)</option> + <option value="Asp->Pro (D)">Asp->Pro (D)</option> + <option value="Asp->Ser (D)">Asp->Ser (D)</option> + <option value="Asp->Thr (D)">Asp->Thr (D)</option> + <option value="Asp->Trp (D)">Asp->Trp (D)</option> + <option value="Asp->Tyr (D)">Asp->Tyr (D)</option> + <option value="Asp->Val (D)">Asp->Val (D)</option> + <option value="Asp->Xle (D)">Asp->Xle (D)</option> + <option value="Atto495Maleimide (C)">Atto495Maleimide (C)</option> + <option value="BADGE (C)">BADGE (C)</option> + <option value="BDMAPP (H)">BDMAPP (H)</option> + <option value="BDMAPP (K)">BDMAPP (K)</option> + <option value="BDMAPP (W)">BDMAPP (W)</option> + <option value="BDMAPP (Y)">BDMAPP (Y)</option> + <option value="BHAc (K)">BHAc (K)</option> + <option value="BHT (C)">BHT (C)</option> + <option value="BHT (H)">BHT (H)</option> + <option value="BHT (K)">BHT (K)</option> + <option value="BHTOH (C)">BHTOH (C)</option> + <option value="BHTOH (H)">BHTOH (H)</option> + <option value="BHTOH (K)">BHTOH (K)</option> + <option value="BITC (C)">BITC (C)</option> + <option value="BITC (K)">BITC (K)</option> + <option value="BITC (N-term)">BITC (N-term)</option> + <option value="BMOE (C)">BMOE (C)</option> + <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> + <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> + <option value="Bacillosamine (N)">Bacillosamine (N)</option> + <option value="Benzoyl (K)">Benzoyl (K)</option> + <option value="Benzoyl (N-term)">Benzoyl (N-term)</option> + <option value="Biotin (K)">Biotin (K)</option> + <option value="Biotin (N-term)">Biotin (N-term)</option> + <option value="Biotin-HPDP (C)">Biotin-HPDP (C)</option> + <option value="Biotin-PEG-PRA (M)">Biotin-PEG-PRA (M)</option> + <option value="Biotin-PEO-Amine (D)">Biotin-PEO-Amine (D)</option> + <option value="Biotin-PEO-Amine (E)">Biotin-PEO-Amine (E)</option> + <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> + <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> + <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> + <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> + <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> + <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> + <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> + <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> + <option value="Biotin:Thermo-21345 (Q)">Biotin:Thermo-21345 (Q)</option> + <option value="Biotin:Thermo-21360 (C-term)">Biotin:Thermo-21360 (C-term)</option> + <option value="Biotin:Thermo-21901+2H2O (C)">Biotin:Thermo-21901+2H2O (C)</option> + <option value="Biotin:Thermo-21901+H2O (C)">Biotin:Thermo-21901+H2O (C)</option> + <option value="Biotin:Thermo-21911 (C)">Biotin:Thermo-21911 (C)</option> + <option value="Biotin:Thermo-33033 (N-term)">Biotin:Thermo-33033 (N-term)</option> + <option value="Biotin:Thermo-33033-H (N-term)">Biotin:Thermo-33033-H (N-term)</option> + <option value="Biotin:Thermo-88310 (K)">Biotin:Thermo-88310 (K)</option> + <option value="Biotin:Thermo-88317 (S)">Biotin:Thermo-88317 (S)</option> + <option value="Biotin:Thermo-88317 (Y)">Biotin:Thermo-88317 (Y)</option> + <option value="BisANS (K)">BisANS (K)</option> + <option value="Bodipy (C)">Bodipy (C)</option> + <option value="Bromo (F)">Bromo (F)</option> + <option value="Bromo (H)">Bromo (H)</option> + <option value="Bromo (W)">Bromo (W)</option> + <option value="Bromo (Y)">Bromo (Y)</option> + <option value="Bromobimane (C)">Bromobimane (C)</option> + <option value="Butyryl (K)">Butyryl (K)</option> + <option value="C8-QAT (K)">C8-QAT (K)</option> + <option value="C8-QAT (N-term)">C8-QAT (N-term)</option> + <option value="CAF (N-term)">CAF (N-term)</option> + <option value="CAMthiopropanoyl (K)">CAMthiopropanoyl (K)</option> + <option value="CHDH (D)">CHDH (D)</option> + <option value="CLIP_TRAQ_2 (K)">CLIP_TRAQ_2 (K)</option> + <option value="CLIP_TRAQ_2 (N-term)">CLIP_TRAQ_2 (N-term)</option> + <option value="CLIP_TRAQ_2 (Y)">CLIP_TRAQ_2 (Y)</option> + <option value="CLIP_TRAQ_3 (K)">CLIP_TRAQ_3 (K)</option> + <option value="CLIP_TRAQ_3 (N-term)">CLIP_TRAQ_3 (N-term)</option> + <option value="CLIP_TRAQ_3 (Y)">CLIP_TRAQ_3 (Y)</option> + <option value="CLIP_TRAQ_4 (K)">CLIP_TRAQ_4 (K)</option> + <option value="CLIP_TRAQ_4 (N-term)">CLIP_TRAQ_4 (N-term)</option> + <option value="CLIP_TRAQ_4 (Y)">CLIP_TRAQ_4 (Y)</option> + <option value="Can-FP-biotin (S)">Can-FP-biotin (S)</option> + <option value="Can-FP-biotin (T)">Can-FP-biotin (T)</option> + <option value="Can-FP-biotin (Y)">Can-FP-biotin (Y)</option> + <option value="Carbamidomethyl (C)">Carbamidomethyl (C)</option> + <option value="Carbamidomethyl (D)">Carbamidomethyl (D)</option> + <option value="Carbamidomethyl (E)">Carbamidomethyl (E)</option> + <option value="Carbamidomethyl (H)">Carbamidomethyl (H)</option> + <option value="Carbamidomethyl (K)">Carbamidomethyl (K)</option> + <option value="Carbamidomethyl (N-term)">Carbamidomethyl (N-term)</option> + <option value="Carbamidomethyl (S)">Carbamidomethyl (S)</option> + <option value="Carbamidomethyl (T)">Carbamidomethyl (T)</option> + <option value="Carbamidomethyl (Y)">Carbamidomethyl (Y)</option> + <option value="CarbamidomethylDTT (C)">CarbamidomethylDTT (C)</option> + <option value="Carbamyl (C)">Carbamyl (C)</option> + <option value="Carbamyl (K)">Carbamyl (K)</option> + <option value="Carbamyl (M)">Carbamyl (M)</option> + <option value="Carbamyl (N-term)">Carbamyl (N-term)</option> + <option value="Carbamyl (R)">Carbamyl (R)</option> + <option value="Carbamyl (S)">Carbamyl (S)</option> + <option value="Carbamyl (T)">Carbamyl (T)</option> + <option value="Carbamyl (Y)">Carbamyl (Y)</option> + <option value="Carbofuran (S)">Carbofuran (S)</option> + <option value="Carboxy (D)">Carboxy (D)</option> + <option value="Carboxy (E)">Carboxy (E)</option> + <option value="Carboxy (K)">Carboxy (K)</option> + <option value="Carboxy (W)">Carboxy (W)</option> + <option value="Carboxyethyl (H)">Carboxyethyl (H)</option> + <option value="Carboxyethyl (K)">Carboxyethyl (K)</option> + <option value="Carboxymethyl (C)">Carboxymethyl (C)</option> + <option value="Carboxymethyl (K)">Carboxymethyl (K)</option> + <option value="Carboxymethyl (N-term)">Carboxymethyl (N-term)</option> + <option value="Carboxymethyl (W)">Carboxymethyl (W)</option> + <option value="Carboxymethyl:13C(2) (C)">Carboxymethyl:13C(2) (C)</option> + <option value="CarboxymethylDMAP (N-term)">CarboxymethylDMAP (N-term)</option> + <option value="CarboxymethylDTT (C)">CarboxymethylDTT (C)</option> + <option value="Cation:Ag (C-term)">Cation:Ag (C-term)</option> + <option value="Cation:Ag (D)">Cation:Ag (D)</option> + <option value="Cation:Ag (E)">Cation:Ag (E)</option> + <option value="Cation:Ca[II] (C-term)">Cation:Ca[II] (C-term)</option> + <option value="Cation:Ca[II] (D)">Cation:Ca[II] (D)</option> + <option value="Cation:Ca[II] (E)">Cation:Ca[II] (E)</option> + <option value="Cation:Cu[I] (C-term)">Cation:Cu[I] (C-term)</option> + <option value="Cation:Cu[I] (D)">Cation:Cu[I] (D)</option> + <option value="Cation:Cu[I] (E)">Cation:Cu[I] (E)</option> + <option value="Cation:Fe[II] (C-term)">Cation:Fe[II] (C-term)</option> + <option value="Cation:Fe[II] (D)">Cation:Fe[II] (D)</option> + <option value="Cation:Fe[II] (E)">Cation:Fe[II] (E)</option> + <option value="Cation:K (C-term)">Cation:K (C-term)</option> + <option value="Cation:K (D)">Cation:K (D)</option> + <option value="Cation:K (E)">Cation:K (E)</option> + <option value="Cation:Li (C-term)">Cation:Li (C-term)</option> + <option value="Cation:Li (D)">Cation:Li (D)</option> + <option value="Cation:Li (E)">Cation:Li (E)</option> + <option value="Cation:Mg[II] (C-term)">Cation:Mg[II] (C-term)</option> + <option value="Cation:Mg[II] (D)">Cation:Mg[II] (D)</option> + <option value="Cation:Mg[II] (E)">Cation:Mg[II] (E)</option> + <option value="Cation:Na (C-term)">Cation:Na (C-term)</option> + <option value="Cation:Na (D)">Cation:Na (D)</option> + <option value="Cation:Na (E)">Cation:Na (E)</option> + <option value="Cation:Ni[II] (C-term)">Cation:Ni[II] (C-term)</option> + <option value="Cation:Ni[II] (D)">Cation:Ni[II] (D)</option> + <option value="Cation:Ni[II] (E)">Cation:Ni[II] (E)</option> + <option value="Cation:Zn[II] (C-term)">Cation:Zn[II] (C-term)</option> + <option value="Cation:Zn[II] (D)">Cation:Zn[II] (D)</option> + <option value="Cation:Zn[II] (E)">Cation:Zn[II] (E)</option> + <option value="Chlorination (Y)">Chlorination (Y)</option> + <option value="Chlorpyrifos (S)">Chlorpyrifos (S)</option> + <option value="Chlorpyrifos (T)">Chlorpyrifos (T)</option> + <option value="Chlorpyrifos (Y)">Chlorpyrifos (Y)</option> + <option value="CoenzymeA (C)">CoenzymeA (C)</option> + <option value="CresylSaligeninPhosphate (H)">CresylSaligeninPhosphate (H)</option> + <option value="CresylSaligeninPhosphate (K)">CresylSaligeninPhosphate (K)</option> + <option value="CresylSaligeninPhosphate (R)">CresylSaligeninPhosphate (R)</option> + <option value="CresylSaligeninPhosphate (S)">CresylSaligeninPhosphate (S)</option> + <option value="CresylSaligeninPhosphate (T)">CresylSaligeninPhosphate (T)</option> + <option value="CresylSaligeninPhosphate (Y)">CresylSaligeninPhosphate (Y)</option> + <option value="Cresylphosphate (H)">Cresylphosphate (H)</option> + <option value="Cresylphosphate (K)">Cresylphosphate (K)</option> + <option value="Cresylphosphate (R)">Cresylphosphate (R)</option> + <option value="Cresylphosphate (S)">Cresylphosphate (S)</option> + <option value="Cresylphosphate (T)">Cresylphosphate (T)</option> + <option value="Cresylphosphate (Y)">Cresylphosphate (Y)</option> + <option value="Crotonaldehyde (C)">Crotonaldehyde (C)</option> + <option value="Crotonaldehyde (H)">Crotonaldehyde (H)</option> + <option value="Crotonaldehyde (K)">Crotonaldehyde (K)</option> + <option value="Crotonyl (K)">Crotonyl (K)</option> + <option value="CuSMo (C)">CuSMo (C)</option> + <option value="Cy3-maleimide (C)">Cy3-maleimide (C)</option> + <option value="Cy3b-maleimide (C)">Cy3b-maleimide (C)</option> + <option value="CyDye-Cy3 (C)">CyDye-Cy3 (C)</option> + <option value="CyDye-Cy5 (C)">CyDye-Cy5 (C)</option> + <option value="Cyano (C)">Cyano (C)</option> + <option value="Cys->Ala (C)">Cys->Ala (C)</option> + <option value="Cys->Arg (C)">Cys->Arg (C)</option> + <option value="Cys->Asn (C)">Cys->Asn (C)</option> + <option value="Cys->Asp (C)">Cys->Asp (C)</option> + <option value="Cys->Dha (C)">Cys->Dha (C)</option> + <option value="Cys->Gln (C)">Cys->Gln (C)</option> + <option value="Cys->Glu (C)">Cys->Glu (C)</option> + <option value="Cys->Gly (C)">Cys->Gly (C)</option> + <option value="Cys->His (C)">Cys->His (C)</option> + <option value="Cys->Lys (C)">Cys->Lys (C)</option> + <option value="Cys->Met (C)">Cys->Met (C)</option> + <option value="Cys->Oxoalanine (C)">Cys->Oxoalanine (C)</option> + <option value="Cys->Phe (C)">Cys->Phe (C)</option> + <option value="Cys->Pro (C)">Cys->Pro (C)</option> + <option value="Cys->Ser (C)">Cys->Ser (C)</option> + <option value="Cys->Thr (C)">Cys->Thr (C)</option> + <option value="Cys->Trp (C)">Cys->Trp (C)</option> + <option value="Cys->Tyr (C)">Cys->Tyr (C)</option> + <option value="Cys->Val (C)">Cys->Val (C)</option> + <option value="Cys->Xle (C)">Cys->Xle (C)</option> + <option value="Cys->ethylaminoAla (C)">Cys->ethylaminoAla (C)</option> + <option value="Cys->methylaminoAla (C)">Cys->methylaminoAla (C)</option> + <option value="Cysteinyl (C)">Cysteinyl (C)</option> + <option value="Cytopiloyne (C)">Cytopiloyne (C)</option> + <option value="Cytopiloyne (K)">Cytopiloyne (K)</option> + <option value="Cytopiloyne (N-term)">Cytopiloyne (N-term)</option> + <option value="Cytopiloyne (P)">Cytopiloyne (P)</option> + <option value="Cytopiloyne (R)">Cytopiloyne (R)</option> + <option value="Cytopiloyne (S)">Cytopiloyne (S)</option> + <option value="Cytopiloyne (Y)">Cytopiloyne (Y)</option> + <option value="Cytopiloyne+water (C)">Cytopiloyne+water (C)</option> + <option value="Cytopiloyne+water (K)">Cytopiloyne+water (K)</option> + <option value="Cytopiloyne+water (N-term)">Cytopiloyne+water (N-term)</option> + <option value="Cytopiloyne+water (R)">Cytopiloyne+water (R)</option> + <option value="Cytopiloyne+water (S)">Cytopiloyne+water (S)</option> + <option value="Cytopiloyne+water (T)">Cytopiloyne+water (T)</option> + <option value="Cytopiloyne+water (Y)">Cytopiloyne+water (Y)</option> + <option value="DAET (S)">DAET (S)</option> + <option value="DAET (T)">DAET (T)</option> + <option value="DEDGFLYMVYASQETFG (K)">DEDGFLYMVYASQETFG (K)</option> + <option value="DFDNB (K)">DFDNB (K)</option> + <option value="DFDNB (N)">DFDNB (N)</option> + <option value="DFDNB (Q)">DFDNB (Q)</option> + <option value="DFDNB (R)">DFDNB (R)</option> + <option value="DHP (C)">DHP (C)</option> + <option value="DMPO (C)">DMPO (C)</option> + <option value="DMPO (H)">DMPO (H)</option> + <option value="DMPO (Y)">DMPO (Y)</option> + <option value="DNCB_hapten (C)">DNCB_hapten (C)</option> + <option value="DNCB_hapten (H)">DNCB_hapten (H)</option> + <option value="DNCB_hapten (K)">DNCB_hapten (K)</option> + <option value="DNCB_hapten (Y)">DNCB_hapten (Y)</option> + <option value="DNPS (C)">DNPS (C)</option> + <option value="DNPS (W)">DNPS (W)</option> + <option value="DTBP (K)">DTBP (K)</option> + <option value="DTBP (N)">DTBP (N)</option> + <option value="DTBP (Q)">DTBP (Q)</option> + <option value="DTBP (R)">DTBP (R)</option> + <option value="DTT_C (C)">DTT_C (C)</option> + <option value="DTT_C:2H(6) (C)">DTT_C:2H(6) (C)</option> + <option value="DTT_ST (S)">DTT_ST (S)</option> + <option value="DTT_ST (T)">DTT_ST (T)</option> + <option value="DTT_ST:2H(6) (S)">DTT_ST:2H(6) (S)</option> + <option value="DTT_ST:2H(6) (T)">DTT_ST:2H(6) (T)</option> + <option value="Dansyl (K)">Dansyl (K)</option> + <option value="Dansyl (N-term)">Dansyl (N-term)</option> + <option value="Dap-DSP (A)">Dap-DSP (A)</option> + <option value="Dap-DSP (E)">Dap-DSP (E)</option> + <option value="Dap-DSP (K)">Dap-DSP (K)</option> + <option value="DeStreak (C)">DeStreak (C)</option> + <option value="Deamidated (N)">Deamidated (N)</option> + <option value="Deamidated (Q)">Deamidated (Q)</option> + <option value="Deamidated (R)">Deamidated (R)</option> + <option value="Deamidated:18O(1) (N)">Deamidated:18O(1) (N)</option> + <option value="Deamidated:18O(1) (Q)">Deamidated:18O(1) (Q)</option> + <option value="Decanoyl (S)">Decanoyl (S)</option> + <option value="Decanoyl (T)">Decanoyl (T)</option> + <option value="Dehydrated (D)">Dehydrated (D)</option> + <option value="Dehydrated (N-term C)">Dehydrated (N-term C)</option> + <option value="Dehydrated (S)">Dehydrated (S)</option> + <option value="Dehydrated (T)">Dehydrated (T)</option> + <option value="Dehydrated (Y)">Dehydrated (Y)</option> + <option value="Dehydro (C)">Dehydro (C)</option> + <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option> + <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> + <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> + <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> + <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> + <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> + <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> + <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> + <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> + <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> + <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> + <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> + <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> + <option value="Delta:H(4)C(3) (K)">Delta:H(4)C(3) (K)</option> + <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> + <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> + <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> + <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> + <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> + <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> + <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> + <option value="Delta:H(6)C(3)O(1) (K)">Delta:H(6)C(3)O(1) (K)</option> + <option value="Delta:H(6)C(6)O(1) (K)">Delta:H(6)C(6)O(1) (K)</option> + <option value="Delta:H(8)C(6)O(1) (L)">Delta:H(8)C(6)O(1) (L)</option> + <option value="Delta:H(8)C(6)O(2) (K)">Delta:H(8)C(6)O(2) (K)</option> + <option value="Delta:Hg(1) (C)">Delta:Hg(1) (C)</option> + <option value="Delta:S(-1)Se(1) (C)">Delta:S(-1)Se(1) (C)</option> + <option value="Delta:S(-1)Se(1) (M)">Delta:S(-1)Se(1) (M)</option> + <option value="Delta:Se(1) (C)">Delta:Se(1) (C)</option> + <option value="Deoxy (D)">Deoxy (D)</option> + <option value="Deoxy (S)">Deoxy (S)</option> + <option value="Deoxy (T)">Deoxy (T)</option> + <option value="Deoxyhypusine (K)">Deoxyhypusine (K)</option> + <option value="Dethiomethyl (M)">Dethiomethyl (M)</option> + <option value="DiART6plex (K)">DiART6plex (K)</option> + <option value="DiART6plex (N-term)">DiART6plex (N-term)</option> + <option value="DiART6plex (Y)">DiART6plex (Y)</option> + <option value="DiART6plex115 (K)">DiART6plex115 (K)</option> + <option value="DiART6plex115 (N-term)">DiART6plex115 (N-term)</option> + <option value="DiART6plex115 (Y)">DiART6plex115 (Y)</option> + <option value="DiART6plex116/119 (K)">DiART6plex116/119 (K)</option> + <option value="DiART6plex116/119 (N-term)">DiART6plex116/119 (N-term)</option> + <option value="DiART6plex116/119 (Y)">DiART6plex116/119 (Y)</option> + <option value="DiART6plex117 (K)">DiART6plex117 (K)</option> + <option value="DiART6plex117 (N-term)">DiART6plex117 (N-term)</option> + <option value="DiART6plex117 (Y)">DiART6plex117 (Y)</option> + <option value="DiART6plex118 (K)">DiART6plex118 (K)</option> + <option value="DiART6plex118 (N-term)">DiART6plex118 (N-term)</option> + <option value="DiART6plex118 (Y)">DiART6plex118 (Y)</option> + <option value="DiLeu4plex (K)">DiLeu4plex (K)</option> + <option value="DiLeu4plex (N-term)">DiLeu4plex (N-term)</option> + <option value="DiLeu4plex (Y)">DiLeu4plex (Y)</option> + <option value="DiLeu4plex115 (K)">DiLeu4plex115 (K)</option> + <option value="DiLeu4plex115 (N-term)">DiLeu4plex115 (N-term)</option> + <option value="DiLeu4plex115 (Y)">DiLeu4plex115 (Y)</option> + <option value="DiLeu4plex117 (K)">DiLeu4plex117 (K)</option> + <option value="DiLeu4plex117 (N-term)">DiLeu4plex117 (N-term)</option> + <option value="DiLeu4plex117 (Y)">DiLeu4plex117 (Y)</option> + <option value="DiLeu4plex118 (K)">DiLeu4plex118 (K)</option> + <option value="DiLeu4plex118 (N-term)">DiLeu4plex118 (N-term)</option> + <option value="DiLeu4plex118 (Y)">DiLeu4plex118 (Y)</option> + <option value="Diacylglycerol (C)">Diacylglycerol (C)</option> + <option value="Dibromo (Y)">Dibromo (Y)</option> + <option value="Dicarbamidomethyl (C)">Dicarbamidomethyl (C)</option> + <option value="Dicarbamidomethyl (H)">Dicarbamidomethyl (H)</option> + <option value="Dicarbamidomethyl (K)">Dicarbamidomethyl (K)</option> + <option value="Dicarbamidomethyl (N-term)">Dicarbamidomethyl (N-term)</option> + <option value="Dicarbamidomethyl (R)">Dicarbamidomethyl (R)</option> + <option value="Didehydro (C-term K)">Didehydro (C-term K)</option> + <option value="Didehydro (S)">Didehydro (S)</option> + <option value="Didehydro (T)">Didehydro (T)</option> + <option value="Didehydro (Y)">Didehydro (Y)</option> + <option value="Didehydroretinylidene (K)">Didehydroretinylidene (K)</option> + <option value="Diethyl (K)">Diethyl (K)</option> + <option value="Diethyl (N-term)">Diethyl (N-term)</option> + <option value="Diethylphosphate (C)">Diethylphosphate (C)</option> + <option value="Diethylphosphate (H)">Diethylphosphate (H)</option> + <option value="Diethylphosphate (K)">Diethylphosphate (K)</option> + <option value="Diethylphosphate (N-term)">Diethylphosphate (N-term)</option> + <option value="Diethylphosphate (S)">Diethylphosphate (S)</option> + <option value="Diethylphosphate (T)">Diethylphosphate (T)</option> + <option value="Diethylphosphate (Y)">Diethylphosphate (Y)</option> + <option value="Difuran (Y)">Difuran (Y)</option> + <option value="Dihydroxyimidazolidine (R)">Dihydroxyimidazolidine (R)</option> + <option value="Diiodo (H)">Diiodo (H)</option> + <option value="Diiodo (Y)">Diiodo (Y)</option> + <option value="Diironsubcluster (C)">Diironsubcluster (C)</option> + <option value="Diisopropylphosphate (K)">Diisopropylphosphate (K)</option> + <option value="Diisopropylphosphate (N-term)">Diisopropylphosphate (N-term)</option> + <option value="Diisopropylphosphate (S)">Diisopropylphosphate (S)</option> + <option value="Diisopropylphosphate (T)">Diisopropylphosphate (T)</option> + <option value="Diisopropylphosphate (Y)">Diisopropylphosphate (Y)</option> + <option value="Dimethyl (K)">Dimethyl (K)</option> + <option value="Dimethyl (N)">Dimethyl (N)</option> + <option value="Dimethyl (N-term)">Dimethyl (N-term)</option> + <option value="Dimethyl (R)">Dimethyl (R)</option> + <option value="Dimethyl:2H(4) (K)">Dimethyl:2H(4) (K)</option> + <option value="Dimethyl:2H(4) (N-term)">Dimethyl:2H(4) (N-term)</option> + <option value="Dimethyl:2H(4)13C(2) (K)">Dimethyl:2H(4)13C(2) (K)</option> + <option value="Dimethyl:2H(4)13C(2) (N-term)">Dimethyl:2H(4)13C(2) (N-term)</option> + <option value="Dimethyl:2H(6) (K)">Dimethyl:2H(6) (K)</option> + <option value="Dimethyl:2H(6) (N-term)">Dimethyl:2H(6) (N-term)</option> + <option value="Dimethyl:2H(6) (R)">Dimethyl:2H(6) (R)</option> + <option value="Dimethyl:2H(6)13C(2) (K)">Dimethyl:2H(6)13C(2) (K)</option> + <option value="Dimethyl:2H(6)13C(2) (N-term)">Dimethyl:2H(6)13C(2) (N-term)</option> + <option value="Dimethyl:2H(6)13C(2) (R)">Dimethyl:2H(6)13C(2) (R)</option> + <option value="DimethylArsino (C)">DimethylArsino (C)</option> + <option value="DimethylamineGMBS (C)">DimethylamineGMBS (C)</option> + <option value="DimethylpyrroleAdduct (K)">DimethylpyrroleAdduct (K)</option> + <option value="Dioxidation (C)">Dioxidation (C)</option> + <option value="Dioxidation (F)">Dioxidation (F)</option> + <option value="Dioxidation (K)">Dioxidation (K)</option> + <option value="Dioxidation (M)">Dioxidation (M)</option> + <option value="Dioxidation (P)">Dioxidation (P)</option> + <option value="Dioxidation (R)">Dioxidation (R)</option> + <option value="Dioxidation (W)">Dioxidation (W)</option> + <option value="Dioxidation (Y)">Dioxidation (Y)</option> + <option value="Diphthamide (H)">Diphthamide (H)</option> + <option value="Dipyridyl (C)">Dipyridyl (C)</option> + <option value="Dipyrrolylmethanemethyl (C)">Dipyrrolylmethanemethyl (C)</option> + <option value="DyLight-maleimide (C)">DyLight-maleimide (C)</option> + <option value="EDEDTIDVFQQQTGG (K)">EDEDTIDVFQQQTGG (K)</option> + <option value="EDT-iodoacetyl-PEO-biotin (S)">EDT-iodoacetyl-PEO-biotin (S)</option> + <option value="EDT-iodoacetyl-PEO-biotin (T)">EDT-iodoacetyl-PEO-biotin (T)</option> + <option value="EDT-maleimide-PEO-biotin (S)">EDT-maleimide-PEO-biotin (S)</option> + <option value="EDT-maleimide-PEO-biotin (T)">EDT-maleimide-PEO-biotin (T)</option> + <option value="EEEDVIEVYQEQTGG (K)">EEEDVIEVYQEQTGG (K)</option> + <option value="EGCG1 (C)">EGCG1 (C)</option> + <option value="EGCG2 (C)">EGCG2 (C)</option> + <option value="EHD-diphenylpentanone (C)">EHD-diphenylpentanone (C)</option> + <option value="EHD-diphenylpentanone (M)">EHD-diphenylpentanone (M)</option> + <option value="EQAT (C)">EQAT (C)</option> + <option value="EQAT:2H(5) (C)">EQAT:2H(5) (C)</option> + <option value="EQIGG (K)">EQIGG (K)</option> + <option value="ESP (K)">ESP (K)</option> + <option value="ESP (N-term)">ESP (N-term)</option> + <option value="ESP:2H(10) (K)">ESP:2H(10) (K)</option> + <option value="ESP:2H(10) (N-term)">ESP:2H(10) (N-term)</option> + <option value="Ethanedithiol (S)">Ethanedithiol (S)</option> + <option value="Ethanedithiol (T)">Ethanedithiol (T)</option> + <option value="Ethanolamine (C)">Ethanolamine (C)</option> + <option value="Ethanolamine (C-term)">Ethanolamine (C-term)</option> + <option value="Ethanolamine (D)">Ethanolamine (D)</option> + <option value="Ethanolamine (E)">Ethanolamine (E)</option> + <option value="Ethanolyl (C)">Ethanolyl (C)</option> + <option value="Ethanolyl (K)">Ethanolyl (K)</option> + <option value="Ethanolyl (R)">Ethanolyl (R)</option> + <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option> + <option value="Ethyl (C-term)">Ethyl (C-term)</option> + <option value="Ethyl (D)">Ethyl (D)</option> + <option value="Ethyl (E)">Ethyl (E)</option> + <option value="Ethyl (K)">Ethyl (K)</option> + <option value="Ethyl (N-term)">Ethyl (N-term)</option> + <option value="Ethyl+Deamidated (N)">Ethyl+Deamidated (N)</option> + <option value="Ethyl+Deamidated (Q)">Ethyl+Deamidated (Q)</option> + <option value="Ethylphosphate (K)">Ethylphosphate (K)</option> + <option value="Ethylphosphate (N-term)">Ethylphosphate (N-term)</option> + <option value="Ethylphosphate (S)">Ethylphosphate (S)</option> + <option value="Ethylphosphate (T)">Ethylphosphate (T)</option> + <option value="Ethylphosphate (Y)">Ethylphosphate (Y)</option> + <option value="ExacTagAmine (K)">ExacTagAmine (K)</option> + <option value="ExacTagThiol (C)">ExacTagThiol (C)</option> + <option value="FAD (C)">FAD (C)</option> + <option value="FAD (H)">FAD (H)</option> + <option value="FAD (Y)">FAD (Y)</option> + <option value="FMN (S)">FMN (S)</option> + <option value="FMN (T)">FMN (T)</option> + <option value="FMNC (C)">FMNC (C)</option> + <option value="FMNH (C)">FMNH (C)</option> + <option value="FMNH (H)">FMNH (H)</option> + <option value="FNEM (C)">FNEM (C)</option> + <option value="FP-Biotin (K)">FP-Biotin (K)</option> + <option value="FP-Biotin (S)">FP-Biotin (S)</option> + <option value="FP-Biotin (T)">FP-Biotin (T)</option> + <option value="FP-Biotin (Y)">FP-Biotin (Y)</option> + <option value="FTC (C)">FTC (C)</option> + <option value="FTC (K)">FTC (K)</option> + <option value="FTC (P)">FTC (P)</option> + <option value="FTC (R)">FTC (R)</option> + <option value="FTC (S)">FTC (S)</option> + <option value="Farnesyl (C)">Farnesyl (C)</option> + <option value="Fluorescein (C)">Fluorescein (C)</option> + <option value="Fluoro (A)">Fluoro (A)</option> + <option value="Fluoro (F)">Fluoro (F)</option> + <option value="Fluoro (W)">Fluoro (W)</option> + <option value="Fluoro (Y)">Fluoro (Y)</option> + <option value="Formyl (K)">Formyl (K)</option> + <option value="Formyl (N-term)">Formyl (N-term)</option> + <option value="Formyl (S)">Formyl (S)</option> + <option value="Formyl (T)">Formyl (T)</option> + <option value="Furan (Y)">Furan (Y)</option> + <option value="G-H1 (R)">G-H1 (R)</option> + <option value="GG (C)">GG (C)</option> + <option value="GG (K)">GG (K)</option> + <option value="GG (S)">GG (S)</option> + <option value="GG (T)">GG (T)</option> + <option value="GGQ (K)">GGQ (K)</option> + <option value="GIST-Quat (K)">GIST-Quat (K)</option> + <option value="GIST-Quat (N-term)">GIST-Quat (N-term)</option> + <option value="GIST-Quat:2H(3) (K)">GIST-Quat:2H(3) (K)</option> + <option value="GIST-Quat:2H(3) (N-term)">GIST-Quat:2H(3) (N-term)</option> + <option value="GIST-Quat:2H(6) (K)">GIST-Quat:2H(6) (K)</option> + <option value="GIST-Quat:2H(6) (N-term)">GIST-Quat:2H(6) (N-term)</option> + <option value="GIST-Quat:2H(9) (K)">GIST-Quat:2H(9) (K)</option> + <option value="GIST-Quat:2H(9) (N-term)">GIST-Quat:2H(9) (N-term)</option> + <option value="Galactosyl (K)">Galactosyl (K)</option> + <option value="GeranylGeranyl (C)">GeranylGeranyl (C)</option> + <option value="Gln->Ala (Q)">Gln->Ala (Q)</option> + <option value="Gln->Arg (Q)">Gln->Arg (Q)</option> + <option value="Gln->Asn (Q)">Gln->Asn (Q)</option> + <option value="Gln->Asp (Q)">Gln->Asp (Q)</option> + <option value="Gln->Cys (Q)">Gln->Cys (Q)</option> + <option value="Gln->Glu (Q)">Gln->Glu (Q)</option> + <option value="Gln->Gly (Q)">Gln->Gly (Q)</option> + <option value="Gln->His (Q)">Gln->His (Q)</option> + <option value="Gln->Lys (Q)">Gln->Lys (Q)</option> + <option value="Gln->Met (Q)">Gln->Met (Q)</option> + <option value="Gln->Phe (Q)">Gln->Phe (Q)</option> + <option value="Gln->Pro (Q)">Gln->Pro (Q)</option> + <option value="Gln->Ser (Q)">Gln->Ser (Q)</option> + <option value="Gln->Thr (Q)">Gln->Thr (Q)</option> + <option value="Gln->Trp (Q)">Gln->Trp (Q)</option> + <option value="Gln->Tyr (Q)">Gln->Tyr (Q)</option> + <option value="Gln->Val (Q)">Gln->Val (Q)</option> + <option value="Gln->Xle (Q)">Gln->Xle (Q)</option> + <option value="Gln->pyro-Glu (N-term Q)">Gln->pyro-Glu (N-term Q)</option> + <option value="Glu (E)">Glu (E)</option> + <option value="Glu->Ala (E)">Glu->Ala (E)</option> + <option value="Glu->Arg (E)">Glu->Arg (E)</option> + <option value="Glu->Asn (E)">Glu->Asn (E)</option> + <option value="Glu->Asp (E)">Glu->Asp (E)</option> + <option value="Glu->Cys (E)">Glu->Cys (E)</option> + <option value="Glu->Gln (E)">Glu->Gln (E)</option> + <option value="Glu->Gly (E)">Glu->Gly (E)</option> + <option value="Glu->His (E)">Glu->His (E)</option> + <option value="Glu->Lys (E)">Glu->Lys (E)</option> + <option value="Glu->Met (E)">Glu->Met (E)</option> + <option value="Glu->Phe (E)">Glu->Phe (E)</option> + <option value="Glu->Pro (E)">Glu->Pro (E)</option> + <option value="Glu->Ser (E)">Glu->Ser (E)</option> + <option value="Glu->Thr (E)">Glu->Thr (E)</option> + <option value="Glu->Trp (E)">Glu->Trp (E)</option> + <option value="Glu->Tyr (E)">Glu->Tyr (E)</option> + <option value="Glu->Val (E)">Glu->Val (E)</option> + <option value="Glu->Xle (E)">Glu->Xle (E)</option> + <option value="Glu->pyro-Glu (N-term E)">Glu->pyro-Glu (N-term E)</option> + <option value="GluGlu (E)">GluGlu (E)</option> + <option value="GluGluGlu (E)">GluGluGlu (E)</option> + <option value="GluGluGluGlu (E)">GluGluGluGlu (E)</option> + <option value="Gluconoylation (K)">Gluconoylation (K)</option> + <option value="Gluconoylation (N-term)">Gluconoylation (N-term)</option> + <option value="Glucosylgalactosyl (K)">Glucosylgalactosyl (K)</option> + <option value="Glucuronyl (S)">Glucuronyl (S)</option> + <option value="Glutathione (C)">Glutathione (C)</option> + <option value="Gly (K)">Gly (K)</option> + <option value="Gly (S)">Gly (S)</option> + <option value="Gly (T)">Gly (T)</option> + <option value="Gly->Ala (G)">Gly->Ala (G)</option> + <option value="Gly->Arg (G)">Gly->Arg (G)</option> + <option value="Gly->Asn (G)">Gly->Asn (G)</option> + <option value="Gly->Asp (G)">Gly->Asp (G)</option> + <option value="Gly->Cys (G)">Gly->Cys (G)</option> + <option value="Gly->Gln (G)">Gly->Gln (G)</option> + <option value="Gly->Glu (G)">Gly->Glu (G)</option> + <option value="Gly->His (G)">Gly->His (G)</option> + <option value="Gly->Lys (G)">Gly->Lys (G)</option> + <option value="Gly->Met (G)">Gly->Met (G)</option> + <option value="Gly->Phe (G)">Gly->Phe (G)</option> + <option value="Gly->Pro (G)">Gly->Pro (G)</option> + <option value="Gly->Ser (G)">Gly->Ser (G)</option> + <option value="Gly->Thr (G)">Gly->Thr (G)</option> + <option value="Gly->Trp (G)">Gly->Trp (G)</option> + <option value="Gly->Tyr (G)">Gly->Tyr (G)</option> + <option value="Gly->Val (G)">Gly->Val (G)</option> + <option value="Gly->Xle (G)">Gly->Xle (G)</option> + <option value="Gly-loss+Amide (C-term G)">Gly-loss+Amide (C-term G)</option> + <option value="Glycerophospho (S)">Glycerophospho (S)</option> + <option value="GlycerylPE (E)">GlycerylPE (E)</option> + <option value="Glycosyl (P)">Glycosyl (P)</option> + <option value="Guanidinyl (K)">Guanidinyl (K)</option> + <option value="Guanidinyl (N-term)">Guanidinyl (N-term)</option> + <option value="HCysThiolactone (K)">HCysThiolactone (K)</option> + <option value="HCysteinyl (C)">HCysteinyl (C)</option> + <option value="HMVK (C)">HMVK (C)</option> + <option value="HN2_mustard (C)">HN2_mustard (C)</option> + <option value="HN2_mustard (H)">HN2_mustard (H)</option> + <option value="HN2_mustard (K)">HN2_mustard (K)</option> + <option value="HN3_mustard (C)">HN3_mustard (C)</option> + <option value="HN3_mustard (H)">HN3_mustard (H)</option> + <option value="HN3_mustard (K)">HN3_mustard (K)</option> + <option value="HNE (A)">HNE (A)</option> + <option value="HNE (C)">HNE (C)</option> + <option value="HNE (H)">HNE (H)</option> + <option value="HNE (K)">HNE (K)</option> + <option value="HNE (L)">HNE (L)</option> + <option value="HNE+Delta:H(2) (C)">HNE+Delta:H(2) (C)</option> + <option value="HNE+Delta:H(2) (H)">HNE+Delta:H(2) (H)</option> + <option value="HNE+Delta:H(2) (K)">HNE+Delta:H(2) (K)</option> + <option value="HNE-BAHAH (C)">HNE-BAHAH (C)</option> + <option value="HNE-BAHAH (H)">HNE-BAHAH (H)</option> + <option value="HNE-BAHAH (K)">HNE-BAHAH (K)</option> + <option value="HNE-Delta:H(2)O (C)">HNE-Delta:H(2)O (C)</option> + <option value="HNE-Delta:H(2)O (H)">HNE-Delta:H(2)O (H)</option> + <option value="HNE-Delta:H(2)O (K)">HNE-Delta:H(2)O (K)</option> + <option value="HPG (R)">HPG (R)</option> + <option value="Heme (C)">Heme (C)</option> + <option value="Heme (H)">Heme (H)</option> + <option value="Hep (K)">Hep (K)</option> + <option value="Hep (N)">Hep (N)</option> + <option value="Hep (Q)">Hep (Q)</option> + <option value="Hep (R)">Hep (R)</option> + <option value="Hep (S)">Hep (S)</option> + <option value="Hep (T)">Hep (T)</option> + <option value="Hex (C)">Hex (C)</option> + <option value="Hex (K)">Hex (K)</option> + <option value="Hex (N)">Hex (N)</option> + <option value="Hex (N-term)">Hex (N-term)</option> + <option value="Hex (R)">Hex (R)</option> + <option value="Hex (S)">Hex (S)</option> + <option value="Hex (T)">Hex (T)</option> + <option value="Hex (W)">Hex (W)</option> + <option value="Hex (Y)">Hex (Y)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1) (N)">Hex(1)HexNAc(1)NeuAc(1) (N)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1) (S)">Hex(1)HexNAc(1)NeuAc(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1) (T)">Hex(1)HexNAc(1)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2) (N)">Hex(1)HexNAc(1)NeuAc(2) (N)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2) (S)">Hex(1)HexNAc(1)NeuAc(2) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2) (T)">Hex(1)HexNAc(1)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(1)dHex(1) (N)">Hex(1)HexNAc(1)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(2) (N)">Hex(1)HexNAc(2) (N)</option> + <option value="Hex(1)HexNAc(2)Pent(1) (N)">Hex(1)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(1) (N)">Hex(1)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(1)Pent(1) (N)">Hex(1)HexNAc(2)dHex(1)Pent(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(2) (N)">Hex(1)HexNAc(2)dHex(2) (N)</option> + <option value="Hex(2) (K)">Hex(2) (K)</option> + <option value="Hex(2) (R)">Hex(2) (R)</option> + <option value="Hex(2)HexNAc(2) (N)">Hex(2)HexNAc(2) (N)</option> + <option value="Hex(2)HexNAc(2)Pent(1) (N)">Hex(2)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(2)HexNAc(2)dHex(1) (N)">Hex(2)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(3) (N)">Hex(3) (N)</option> + <option value="Hex(3)HexNAc(1)Pent(1) (N)">Hex(3)HexNAc(1)Pent(1) (N)</option> + <option value="Hex(3)HexNAc(2) (N)">Hex(3)HexNAc(2) (N)</option> + <option value="Hex(3)HexNAc(2)P(1) (N)">Hex(3)HexNAc(2)P(1) (N)</option> + <option value="Hex(3)HexNAc(4) (N)">Hex(3)HexNAc(4) (N)</option> + <option value="Hex(4)HexNAc(4) (N)">Hex(4)HexNAc(4) (N)</option> + <option value="Hex(5)HexNAc(2) (N)">Hex(5)HexNAc(2) (N)</option> + <option value="Hex(5)HexNAc(4) (N)">Hex(5)HexNAc(4) (N)</option> + <option value="Hex(5)HexNAc(4)NeuAc(1) (N)">Hex(5)HexNAc(4)NeuAc(1) (N)</option> + <option value="Hex(5)HexNAc(4)NeuAc(2) (N)">Hex(5)HexNAc(4)NeuAc(2) (N)</option> + <option value="Hex1HexNAc1 (N)">Hex1HexNAc1 (N)</option> + <option value="Hex1HexNAc1 (S)">Hex1HexNAc1 (S)</option> + <option value="Hex1HexNAc1 (T)">Hex1HexNAc1 (T)</option> + <option value="HexN (K)">HexN (K)</option> + <option value="HexN (N)">HexN (N)</option> + <option value="HexN (T)">HexN (T)</option> + <option value="HexN (W)">HexN (W)</option> + <option value="HexNAc (N)">HexNAc (N)</option> + <option value="HexNAc (S)">HexNAc (S)</option> + <option value="HexNAc (T)">HexNAc (T)</option> + <option value="HexNAc(1)dHex(1) (N)">HexNAc(1)dHex(1) (N)</option> + <option value="HexNAc(1)dHex(2) (N)">HexNAc(1)dHex(2) (N)</option> + <option value="HexNAc(2) (N)">HexNAc(2) (N)</option> + <option value="HexNAc(2)dHex(1) (N)">HexNAc(2)dHex(1) (N)</option> + <option value="HexNAc(2)dHex(2) (N)">HexNAc(2)dHex(2) (N)</option> + <option value="His->Ala (H)">His->Ala (H)</option> + <option value="His->Arg (H)">His->Arg (H)</option> + <option value="His->Asn (H)">His->Asn (H)</option> + <option value="His->Asp (H)">His->Asp (H)</option> + <option value="His->Cys (H)">His->Cys (H)</option> + <option value="His->Gln (H)">His->Gln (H)</option> + <option value="His->Glu (H)">His->Glu (H)</option> + <option value="His->Gly (H)">His->Gly (H)</option> + <option value="His->Lys (H)">His->Lys (H)</option> + <option value="His->Met (H)">His->Met (H)</option> + <option value="His->Phe (H)">His->Phe (H)</option> + <option value="His->Pro (H)">His->Pro (H)</option> + <option value="His->Ser (H)">His->Ser (H)</option> + <option value="His->Thr (H)">His->Thr (H)</option> + <option value="His->Trp (H)">His->Trp (H)</option> + <option value="His->Tyr (H)">His->Tyr (H)</option> + <option value="His->Val (H)">His->Val (H)</option> + <option value="His->Xle (H)">His->Xle (H)</option> + <option value="Homocysteic_acid (M)">Homocysteic_acid (M)</option> + <option value="Hydroxamic_acid (D)">Hydroxamic_acid (D)</option> + <option value="Hydroxamic_acid (E)">Hydroxamic_acid (E)</option> + <option value="Hydroxycinnamyl (C)">Hydroxycinnamyl (C)</option> + <option value="Hydroxyfarnesyl (C)">Hydroxyfarnesyl (C)</option> + <option value="Hydroxyheme (E)">Hydroxyheme (E)</option> + <option value="Hydroxymethyl (N)">Hydroxymethyl (N)</option> + <option value="HydroxymethylOP (K)">HydroxymethylOP (K)</option> + <option value="Hydroxytrimethyl (K)">Hydroxytrimethyl (K)</option> + <option value="Hypusine (K)">Hypusine (K)</option> + <option value="IBTP (C)">IBTP (C)</option> + <option value="ICAT-C (C)">ICAT-C (C)</option> + <option value="ICAT-C:13C(9) (C)">ICAT-C:13C(9) (C)</option> + <option value="ICAT-D (C)">ICAT-D (C)</option> + <option value="ICAT-D:2H(8) (C)">ICAT-D:2H(8) (C)</option> + <option value="ICAT-G (C)">ICAT-G (C)</option> + <option value="ICAT-G:2H(8) (C)">ICAT-G:2H(8) (C)</option> + <option value="ICAT-H (C)">ICAT-H (C)</option> + <option value="ICAT-H:13C(6) (C)">ICAT-H:13C(6) (C)</option> + <option value="ICDID (C)">ICDID (C)</option> + <option value="ICDID:2H(6) (C)">ICDID:2H(6) (C)</option> + <option value="ICPL (K)">ICPL (K)</option> + <option value="ICPL (N-term)">ICPL (N-term)</option> + <option value="ICPL:13C(6) (K)">ICPL:13C(6) (K)</option> + <option value="ICPL:13C(6) (N-term)">ICPL:13C(6) (N-term)</option> + <option value="ICPL:13C(6)2H(4) (K)">ICPL:13C(6)2H(4) (K)</option> + <option value="ICPL:13C(6)2H(4) (N-term)">ICPL:13C(6)2H(4) (N-term)</option> + <option value="ICPL:2H(4) (K)">ICPL:2H(4) (K)</option> + <option value="ICPL:2H(4) (N-term)">ICPL:2H(4) (N-term)</option> + <option value="IDEnT (C)">IDEnT (C)</option> + <option value="IED-Biotin (C)">IED-Biotin (C)</option> + <option value="IGBP (C)">IGBP (C)</option> + <option value="IGBP:13C(2) (C)">IGBP:13C(2) (C)</option> + <option value="IMEHex(2)NeuAc(1) (K)">IMEHex(2)NeuAc(1) (K)</option> + <option value="IMID (K)">IMID (K)</option> + <option value="IMID:2H(4) (K)">IMID:2H(4) (K)</option> + <option value="ISD_z+2_ion (N-term)">ISD_z+2_ion (N-term)</option> + <option value="Iminobiotin (K)">Iminobiotin (K)</option> + <option value="Iminobiotin (N-term)">Iminobiotin (N-term)</option> + <option value="Iodo (H)">Iodo (H)</option> + <option value="Iodo (Y)">Iodo (Y)</option> + <option value="IodoU-AMP (F)">IodoU-AMP (F)</option> + <option value="IodoU-AMP (W)">IodoU-AMP (W)</option> + <option value="IodoU-AMP (Y)">IodoU-AMP (Y)</option> + <option value="Iodoacetanilide (C)">Iodoacetanilide (C)</option> + <option value="Iodoacetanilide (K)">Iodoacetanilide (K)</option> + <option value="Iodoacetanilide (N-term)">Iodoacetanilide (N-term)</option> + <option value="Iodoacetanilide:13C(6) (C)">Iodoacetanilide:13C(6) (C)</option> + <option value="Iodoacetanilide:13C(6) (K)">Iodoacetanilide:13C(6) (K)</option> + <option value="Iodoacetanilide:13C(6) (N-term)">Iodoacetanilide:13C(6) (N-term)</option> + <option value="Isopropylphospho (S)">Isopropylphospho (S)</option> + <option value="Isopropylphospho (T)">Isopropylphospho (T)</option> + <option value="Isopropylphospho (Y)">Isopropylphospho (Y)</option> + <option value="LG-Hlactam-K (K)">LG-Hlactam-K (K)</option> + <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> + <option value="LG-anhydrolactam (K)">LG-anhydrolactam (K)</option> + <option value="LG-anhydrolactam (N-term)">LG-anhydrolactam (N-term)</option> + <option value="LG-anhyropyrrole (K)">LG-anhyropyrrole (K)</option> + <option value="LG-anhyropyrrole (N-term)">LG-anhyropyrrole (N-term)</option> + <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> + <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> + <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> + <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> + <option value="LRGG (K)">LRGG (K)</option> + <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> + <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> + <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> + <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> + <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> + <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> + <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> + <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> + <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> + <option value="Label:13C(5)15N(1) (E)">Label:13C(5)15N(1) (E)</option> + <option value="Label:13C(5)15N(1) (M)">Label:13C(5)15N(1) (M)</option> + <option value="Label:13C(5)15N(1) (P)">Label:13C(5)15N(1) (P)</option> + <option value="Label:13C(5)15N(1) (V)">Label:13C(5)15N(1) (V)</option> + <option value="Label:13C(6) (I)">Label:13C(6) (I)</option> + <option value="Label:13C(6) (K)">Label:13C(6) (K)</option> + <option value="Label:13C(6) (L)">Label:13C(6) (L)</option> + <option value="Label:13C(6) (R)">Label:13C(6) (R)</option> + <option value="Label:13C(6)+Acetyl (K)">Label:13C(6)+Acetyl (K)</option> + <option value="Label:13C(6)+Dimethyl (K)">Label:13C(6)+Dimethyl (K)</option> + <option value="Label:13C(6)+GG (K)">Label:13C(6)+GG (K)</option> + <option value="Label:13C(6)15N(1) (I)">Label:13C(6)15N(1) (I)</option> + <option value="Label:13C(6)15N(1) (L)">Label:13C(6)15N(1) (L)</option> + <option value="Label:13C(6)15N(2) (K)">Label:13C(6)15N(2) (K)</option> + <option value="Label:13C(6)15N(2)+Acetyl (K)">Label:13C(6)15N(2)+Acetyl (K)</option> + <option value="Label:13C(6)15N(2)+Dimethyl (K)">Label:13C(6)15N(2)+Dimethyl (K)</option> + <option value="Label:13C(6)15N(2)+GG (K)">Label:13C(6)15N(2)+GG (K)</option> + <option value="Label:13C(6)15N(4) (R)">Label:13C(6)15N(4) (R)</option> + <option value="Label:13C(6)15N(4)+Dimethyl (R)">Label:13C(6)15N(4)+Dimethyl (R)</option> + <option value="Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)">Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)</option> + <option value="Label:13C(6)15N(4)+Methyl (R)">Label:13C(6)15N(4)+Methyl (R)</option> + <option value="Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)">Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)</option> + <option value="Label:13C(8)15N(2) (R)">Label:13C(8)15N(2) (R)</option> + <option value="Label:13C(9) (F)">Label:13C(9) (F)</option> + <option value="Label:13C(9) (Y)">Label:13C(9) (Y)</option> + <option value="Label:13C(9)+Phospho (Y)">Label:13C(9)+Phospho (Y)</option> + <option value="Label:13C(9)15N(1) (F)">Label:13C(9)15N(1) (F)</option> + <option value="Label:15N(1) (A)">Label:15N(1) (A)</option> + <option value="Label:15N(1) (C)">Label:15N(1) (C)</option> + <option value="Label:15N(1) (D)">Label:15N(1) (D)</option> + <option value="Label:15N(1) (E)">Label:15N(1) (E)</option> + <option value="Label:15N(1) (F)">Label:15N(1) (F)</option> + <option value="Label:15N(1) (G)">Label:15N(1) (G)</option> + <option value="Label:15N(1) (I)">Label:15N(1) (I)</option> + <option value="Label:15N(1) (L)">Label:15N(1) (L)</option> + <option value="Label:15N(1) (M)">Label:15N(1) (M)</option> + <option value="Label:15N(1) (P)">Label:15N(1) (P)</option> + <option value="Label:15N(1) (S)">Label:15N(1) (S)</option> + <option value="Label:15N(1) (T)">Label:15N(1) (T)</option> + <option value="Label:15N(1) (V)">Label:15N(1) (V)</option> + <option value="Label:15N(1) (Y)">Label:15N(1) (Y)</option> + <option value="Label:15N(2) (K)">Label:15N(2) (K)</option> + <option value="Label:15N(2) (N)">Label:15N(2) (N)</option> + <option value="Label:15N(2) (Q)">Label:15N(2) (Q)</option> + <option value="Label:15N(2) (W)">Label:15N(2) (W)</option> + <option value="Label:15N(2)2H(9) (K)">Label:15N(2)2H(9) (K)</option> + <option value="Label:15N(3) (H)">Label:15N(3) (H)</option> + <option value="Label:15N(4) (R)">Label:15N(4) (R)</option> + <option value="Label:18O(1) (C-term)">Label:18O(1) (C-term)</option> + <option value="Label:18O(1) (S)">Label:18O(1) (S)</option> + <option value="Label:18O(1) (T)">Label:18O(1) (T)</option> + <option value="Label:18O(1) (Y)">Label:18O(1) (Y)</option> + <option value="Label:18O(2) (C-term)">Label:18O(2) (C-term)</option> + <option value="Label:2H(10) (L)">Label:2H(10) (L)</option> + <option value="Label:2H(3) (L)">Label:2H(3) (L)</option> + <option value="Label:2H(3) (M)">Label:2H(3) (M)</option> + <option value="Label:2H(3)+Oxidation (M)">Label:2H(3)+Oxidation (M)</option> + <option value="Label:2H(4) (F)">Label:2H(4) (F)</option> + <option value="Label:2H(4) (K)">Label:2H(4) (K)</option> + <option value="Label:2H(4) (Y)">Label:2H(4) (Y)</option> + <option value="Label:2H(4)+Acetyl (K)">Label:2H(4)+Acetyl (K)</option> + <option value="Label:2H(4)+GG (K)">Label:2H(4)+GG (K)</option> + <option value="Label:2H(4)13C(1) (R)">Label:2H(4)13C(1) (R)</option> + <option value="Label:2H(6)15N(1) (P)">Label:2H(6)15N(1) (P)</option> + <option value="Label:2H(7)15N(4) (R)">Label:2H(7)15N(4) (R)</option> + <option value="Label:2H(9)13C(6)15N(2) (K)">Label:2H(9)13C(6)15N(2) (K)</option> + <option value="Leu->MetOx (L)">Leu->MetOx (L)</option> + <option value="Lipoyl (K)">Lipoyl (K)</option> + <option value="Lys (N-term)">Lys (N-term)</option> + <option value="Lys->Ala (K)">Lys->Ala (K)</option> + <option value="Lys->Allysine (K)">Lys->Allysine (K)</option> + <option value="Lys->AminoadipicAcid (K)">Lys->AminoadipicAcid (K)</option> + <option value="Lys->Arg (K)">Lys->Arg (K)</option> + <option value="Lys->Asn (K)">Lys->Asn (K)</option> + <option value="Lys->Asp (K)">Lys->Asp (K)</option> + <option value="Lys->CamCys (K)">Lys->CamCys (K)</option> + <option value="Lys->Cys (K)">Lys->Cys (K)</option> + <option value="Lys->Gln (K)">Lys->Gln (K)</option> + <option value="Lys->Glu (K)">Lys->Glu (K)</option> + <option value="Lys->Gly (K)">Lys->Gly (K)</option> + <option value="Lys->His (K)">Lys->His (K)</option> + <option value="Lys->Met (K)">Lys->Met (K)</option> + <option value="Lys->MetOx (K)">Lys->MetOx (K)</option> + <option value="Lys->Phe (K)">Lys->Phe (K)</option> + <option value="Lys->Pro (K)">Lys->Pro (K)</option> + <option value="Lys->Ser (K)">Lys->Ser (K)</option> + <option value="Lys->Thr (K)">Lys->Thr (K)</option> + <option value="Lys->Trp (K)">Lys->Trp (K)</option> + <option value="Lys->Tyr (K)">Lys->Tyr (K)</option> + <option value="Lys->Val (K)">Lys->Val (K)</option> + <option value="Lys->Xle (K)">Lys->Xle (K)</option> + <option value="Lysbiotinhydrazide (K)">Lysbiotinhydrazide (K)</option> + <option value="MDCC (C)">MDCC (C)</option> + <option value="MG-H1 (R)">MG-H1 (R)</option> + <option value="MM-diphenylpentanone (C)">MM-diphenylpentanone (C)</option> + <option value="MTSL (C)">MTSL (C)</option> + <option value="Maleimide-PEO2-Biotin (C)">Maleimide-PEO2-Biotin (C)</option> + <option value="Malonyl (C)">Malonyl (C)</option> + <option value="Malonyl (S)">Malonyl (S)</option> + <option value="Menadione (C)">Menadione (C)</option> + <option value="Menadione (K)">Menadione (K)</option> + <option value="Menadione-HQ (C)">Menadione-HQ (C)</option> + <option value="Menadione-HQ (K)">Menadione-HQ (K)</option> + <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option> + <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option> + <option value="Met->Aha (M)">Met->Aha (M)</option> + <option value="Met->Ala (M)">Met->Ala (M)</option> + <option value="Met->Arg (M)">Met->Arg (M)</option> + <option value="Met->Asn (M)">Met->Asn (M)</option> + <option value="Met->Asp (M)">Met->Asp (M)</option> + <option value="Met->Cys (M)">Met->Cys (M)</option> + <option value="Met->Gln (M)">Met->Gln (M)</option> + <option value="Met->Glu (M)">Met->Glu (M)</option> + <option value="Met->Gly (M)">Met->Gly (M)</option> + <option value="Met->His (M)">Met->His (M)</option> + <option value="Met->Hpg (M)">Met->Hpg (M)</option> + <option value="Met->Hse (C-term M)">Met->Hse (C-term M)</option> + <option value="Met->Hsl (C-term M)">Met->Hsl (C-term M)</option> + <option value="Met->Lys (M)">Met->Lys (M)</option> + <option value="Met->Phe (M)">Met->Phe (M)</option> + <option value="Met->Pro (M)">Met->Pro (M)</option> + <option value="Met->Ser (M)">Met->Ser (M)</option> + <option value="Met->Thr (M)">Met->Thr (M)</option> + <option value="Met->Trp (M)">Met->Trp (M)</option> + <option value="Met->Tyr (M)">Met->Tyr (M)</option> + <option value="Met->Val (M)">Met->Val (M)</option> + <option value="Met->Xle (M)">Met->Xle (M)</option> + <option value="Methyl (C)">Methyl (C)</option> + <option value="Methyl (C-term)">Methyl (C-term)</option> + <option value="Methyl (D)">Methyl (D)</option> + <option value="Methyl (E)">Methyl (E)</option> + <option value="Methyl (H)">Methyl (H)</option> + <option value="Methyl (I)">Methyl (I)</option> + <option value="Methyl (K)">Methyl (K)</option> + <option value="Methyl (L)">Methyl (L)</option> + <option value="Methyl (N)">Methyl (N)</option> + <option value="Methyl (N-term)">Methyl (N-term)</option> + <option value="Methyl (Q)">Methyl (Q)</option> + <option value="Methyl (R)">Methyl (R)</option> + <option value="Methyl (S)">Methyl (S)</option> + <option value="Methyl (T)">Methyl (T)</option> + <option value="Methyl+Acetyl:2H(3) (K)">Methyl+Acetyl:2H(3) (K)</option> + <option value="Methyl+Deamidated (N)">Methyl+Deamidated (N)</option> + <option value="Methyl+Deamidated (Q)">Methyl+Deamidated (Q)</option> + <option value="Methyl-PEO12-Maleimide (C)">Methyl-PEO12-Maleimide (C)</option> + <option value="Methyl:2H(2) (K)">Methyl:2H(2) (K)</option> + <option value="Methyl:2H(3) (C-term)">Methyl:2H(3) (C-term)</option> + <option value="Methyl:2H(3) (D)">Methyl:2H(3) (D)</option> + <option value="Methyl:2H(3) (E)">Methyl:2H(3) (E)</option> + <option value="Methyl:2H(3) (K)">Methyl:2H(3) (K)</option> + <option value="Methyl:2H(3) (R)">Methyl:2H(3) (R)</option> + <option value="Methyl:2H(3)+Acetyl:2H(3) (K)">Methyl:2H(3)+Acetyl:2H(3) (K)</option> + <option value="Methyl:2H(3)13C(1) (K)">Methyl:2H(3)13C(1) (K)</option> + <option value="Methyl:2H(3)13C(1) (R)">Methyl:2H(3)13C(1) (R)</option> + <option value="Methylamine (S)">Methylamine (S)</option> + <option value="Methylamine (T)">Methylamine (T)</option> + <option value="Methylmalonylation (S)">Methylmalonylation (S)</option> + <option value="Methylphosphonate (S)">Methylphosphonate (S)</option> + <option value="Methylphosphonate (T)">Methylphosphonate (T)</option> + <option value="Methylphosphonate (Y)">Methylphosphonate (Y)</option> + <option value="Methylpyrroline (K)">Methylpyrroline (K)</option> + <option value="Methylthio (C)">Methylthio (C)</option> + <option value="Methylthio (D)">Methylthio (D)</option> + <option value="Methylthio (K)">Methylthio (K)</option> + <option value="Methylthio (N)">Methylthio (N)</option> + <option value="Methylthio (N-term)">Methylthio (N-term)</option> + <option value="Molybdopterin (C)">Molybdopterin (C)</option> + <option value="MolybdopterinGD (C)">MolybdopterinGD (C)</option> + <option value="MolybdopterinGD (D)">MolybdopterinGD (D)</option> + <option value="MolybdopterinGD+Delta:S(-1)Se(1) (C)">MolybdopterinGD+Delta:S(-1)Se(1) (C)</option> + <option value="MurNAc (A)">MurNAc (A)</option> + <option value="Myristoyl (C)">Myristoyl (C)</option> + <option value="Myristoyl (K)">Myristoyl (K)</option> + <option value="Myristoyl (N-term G)">Myristoyl (N-term G)</option> + <option value="N-dimethylphosphate (S)">N-dimethylphosphate (S)</option> + <option value="NA-LNO2 (C)">NA-LNO2 (C)</option> + <option value="NA-LNO2 (H)">NA-LNO2 (H)</option> + <option value="NA-OA-NO2 (C)">NA-OA-NO2 (C)</option> + <option value="NA-OA-NO2 (H)">NA-OA-NO2 (H)</option> + <option value="NBS (W)">NBS (W)</option> + <option value="NBS:13C(6) (W)">NBS:13C(6) (W)</option> + <option value="NDA (K)">NDA (K)</option> + <option value="NDA (N-term)">NDA (N-term)</option> + <option value="NEIAA (C)">NEIAA (C)</option> + <option value="NEIAA (Y)">NEIAA (Y)</option> + <option value="NEIAA:2H(5) (C)">NEIAA:2H(5) (C)</option> + <option value="NEIAA:2H(5) (Y)">NEIAA:2H(5) (Y)</option> + <option value="NEM:2H(5) (C)">NEM:2H(5) (C)</option> + <option value="NEM:2H(5)+H2O (C)">NEM:2H(5)+H2O (C)</option> + <option value="NEMsulfur (C)">NEMsulfur (C)</option> + <option value="NEMsulfurWater (C)">NEMsulfurWater (C)</option> + <option value="NHS-LC-Biotin (K)">NHS-LC-Biotin (K)</option> + <option value="NHS-LC-Biotin (N-term)">NHS-LC-Biotin (N-term)</option> + <option value="NHS-fluorescein (K)">NHS-fluorescein (K)</option> + <option value="NIC (K)">NIC (K)</option> + <option value="NIC (N-term)">NIC (N-term)</option> + <option value="NIPCAM (C)">NIPCAM (C)</option> + <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> + <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> + <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option> + <option value="Nethylmaleimide (C)">Nethylmaleimide (C)</option> + <option value="Nethylmaleimide+water (C)">Nethylmaleimide+water (C)</option> + <option value="Nethylmaleimide+water (K)">Nethylmaleimide+water (K)</option> + <option value="NeuAc (N)">NeuAc (N)</option> + <option value="NeuAc (S)">NeuAc (S)</option> + <option value="NeuAc (T)">NeuAc (T)</option> + <option value="NeuGc (N)">NeuGc (N)</option> + <option value="NeuGc (S)">NeuGc (S)</option> + <option value="NeuGc (T)">NeuGc (T)</option> + <option value="Nitro (W)">Nitro (W)</option> + <option value="Nitro (Y)">Nitro (Y)</option> + <option value="Nitrosyl (C)">Nitrosyl (C)</option> + <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option> + <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option> + <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option> + <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option> + <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option> + <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option> + <option value="O-Et-N-diMePhospho (S)">O-Et-N-diMePhospho (S)</option> + <option value="O-Isopropylmethylphosphonate (S)">O-Isopropylmethylphosphonate (S)</option> + <option value="O-Isopropylmethylphosphonate (T)">O-Isopropylmethylphosphonate (T)</option> + <option value="O-Isopropylmethylphosphonate (Y)">O-Isopropylmethylphosphonate (Y)</option> + <option value="O-Methylphosphate (S)">O-Methylphosphate (S)</option> + <option value="O-Methylphosphate (T)">O-Methylphosphate (T)</option> + <option value="O-Methylphosphate (Y)">O-Methylphosphate (Y)</option> + <option value="O-pinacolylmethylphosphonate (H)">O-pinacolylmethylphosphonate (H)</option> + <option value="O-pinacolylmethylphosphonate (K)">O-pinacolylmethylphosphonate (K)</option> + <option value="O-pinacolylmethylphosphonate (S)">O-pinacolylmethylphosphonate (S)</option> + <option value="O-pinacolylmethylphosphonate (T)">O-pinacolylmethylphosphonate (T)</option> + <option value="O-pinacolylmethylphosphonate (Y)">O-pinacolylmethylphosphonate (Y)</option> + <option value="Octanoyl (C)">Octanoyl (C)</option> + <option value="Octanoyl (S)">Octanoyl (S)</option> + <option value="Octanoyl (T)">Octanoyl (T)</option> + <option value="OxArgBiotin (R)">OxArgBiotin (R)</option> + <option value="OxArgBiotinRed (R)">OxArgBiotinRed (R)</option> + <option value="OxLysBiotin (K)">OxLysBiotin (K)</option> + <option value="OxLysBiotinRed (K)">OxLysBiotinRed (K)</option> + <option value="OxProBiotin (P)">OxProBiotin (P)</option> + <option value="OxProBiotinRed (P)">OxProBiotinRed (P)</option> + <option value="Oxidation (C)">Oxidation (C)</option> + <option value="Oxidation (C-term G)">Oxidation (C-term G)</option> + <option value="Oxidation (D)">Oxidation (D)</option> + <option value="Oxidation (F)">Oxidation (F)</option> + <option value="Oxidation (H)">Oxidation (H)</option> + <option value="Oxidation (K)">Oxidation (K)</option> + <option value="Oxidation (M)">Oxidation (M)</option> + <option value="Oxidation (N)">Oxidation (N)</option> + <option value="Oxidation (P)">Oxidation (P)</option> + <option value="Oxidation (R)">Oxidation (R)</option> + <option value="Oxidation (W)">Oxidation (W)</option> + <option value="Oxidation (Y)">Oxidation (Y)</option> + <option value="Oxidation+NEM (C)">Oxidation+NEM (C)</option> + <option value="PEITC (C)">PEITC (C)</option> + <option value="PEITC (K)">PEITC (K)</option> + <option value="PEITC (N-term)">PEITC (N-term)</option> + <option value="PEO-Iodoacetyl-LC-Biotin (C)">PEO-Iodoacetyl-LC-Biotin (C)</option> + <option value="PET (S)">PET (S)</option> + <option value="PET (T)">PET (T)</option> + <option value="PS_Hapten (C)">PS_Hapten (C)</option> + <option value="PS_Hapten (H)">PS_Hapten (H)</option> + <option value="PS_Hapten (K)">PS_Hapten (K)</option> + <option value="Palmitoleyl (C)">Palmitoleyl (C)</option> + <option value="Palmitoleyl (S)">Palmitoleyl (S)</option> + <option value="Palmitoleyl (T)">Palmitoleyl (T)</option> + <option value="Palmitoyl (C)">Palmitoyl (C)</option> + <option value="Palmitoyl (K)">Palmitoyl (K)</option> + <option value="Palmitoyl (S)">Palmitoyl (S)</option> + <option value="Palmitoyl (T)">Palmitoyl (T)</option> + <option value="Pentylamine (Q)">Pentylamine (Q)</option> + <option value="Phe->Ala (F)">Phe->Ala (F)</option> + <option value="Phe->Arg (F)">Phe->Arg (F)</option> + <option value="Phe->Asn (F)">Phe->Asn (F)</option> + <option value="Phe->Asp (F)">Phe->Asp (F)</option> + <option value="Phe->CamCys (F)">Phe->CamCys (F)</option> + <option value="Phe->Cys (F)">Phe->Cys (F)</option> + <option value="Phe->Gln (F)">Phe->Gln (F)</option> + <option value="Phe->Glu (F)">Phe->Glu (F)</option> + <option value="Phe->Gly (F)">Phe->Gly (F)</option> + <option value="Phe->His (F)">Phe->His (F)</option> + <option value="Phe->Lys (F)">Phe->Lys (F)</option> + <option value="Phe->Met (F)">Phe->Met (F)</option> + <option value="Phe->Pro (F)">Phe->Pro (F)</option> + <option value="Phe->Ser (F)">Phe->Ser (F)</option> + <option value="Phe->Thr (F)">Phe->Thr (F)</option> + <option value="Phe->Trp (F)">Phe->Trp (F)</option> + <option value="Phe->Tyr (F)">Phe->Tyr (F)</option> + <option value="Phe->Val (F)">Phe->Val (F)</option> + <option value="Phe->Xle (F)">Phe->Xle (F)</option> + <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> + <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> + <option value="Phospho (C)">Phospho (C)</option> + <option value="Phospho (D)">Phospho (D)</option> + <option value="Phospho (H)">Phospho (H)</option> + <option value="Phospho (K)">Phospho (K)</option> + <option value="Phospho (R)">Phospho (R)</option> + <option value="Phospho (S)">Phospho (S)</option> + <option value="Phospho (T)">Phospho (T)</option> + <option value="Phospho (Y)">Phospho (Y)</option> + <option value="PhosphoHex (S)">PhosphoHex (S)</option> + <option value="PhosphoHexNAc (S)">PhosphoHexNAc (S)</option> + <option value="PhosphoHexNAc (T)">PhosphoHexNAc (T)</option> + <option value="PhosphoUridine (H)">PhosphoUridine (H)</option> + <option value="PhosphoUridine (Y)">PhosphoUridine (Y)</option> + <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option> + <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option> + <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option> + <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option> + <option value="Phosphogluconoylation (K)">Phosphogluconoylation (K)</option> + <option value="Phosphogluconoylation (N-term)">Phosphogluconoylation (N-term)</option> + <option value="Phosphoguanosine (H)">Phosphoguanosine (H)</option> + <option value="Phosphoguanosine (K)">Phosphoguanosine (K)</option> + <option value="Phosphopantetheine (S)">Phosphopantetheine (S)</option> + <option value="Phosphopropargyl (S)">Phosphopropargyl (S)</option> + <option value="Phosphopropargyl (T)">Phosphopropargyl (T)</option> + <option value="Phosphopropargyl (Y)">Phosphopropargyl (Y)</option> + <option value="PhosphoribosyldephosphoCoA (S)">PhosphoribosyldephosphoCoA (S)</option> + <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option> + <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option> + <option value="Phytochromobilin (C)">Phytochromobilin (C)</option> + <option value="Piperidine (K)">Piperidine (K)</option> + <option value="Piperidine (N-term)">Piperidine (N-term)</option> + <option value="Pro->Ala (P)">Pro->Ala (P)</option> + <option value="Pro->Arg (P)">Pro->Arg (P)</option> + <option value="Pro->Asn (P)">Pro->Asn (P)</option> + <option value="Pro->Asp (P)">Pro->Asp (P)</option> + <option value="Pro->Cys (P)">Pro->Cys (P)</option> + <option value="Pro->Gln (P)">Pro->Gln (P)</option> + <option value="Pro->Glu (P)">Pro->Glu (P)</option> + <option value="Pro->Gly (P)">Pro->Gly (P)</option> + <option value="Pro->His (P)">Pro->His (P)</option> + <option value="Pro->Lys (P)">Pro->Lys (P)</option> + <option value="Pro->Met (P)">Pro->Met (P)</option> + <option value="Pro->Phe (P)">Pro->Phe (P)</option> + <option value="Pro->Pyrrolidinone (P)">Pro->Pyrrolidinone (P)</option> + <option value="Pro->Pyrrolidone (P)">Pro->Pyrrolidone (P)</option> + <option value="Pro->Ser (P)">Pro->Ser (P)</option> + <option value="Pro->Thr (P)">Pro->Thr (P)</option> + <option value="Pro->Trp (P)">Pro->Trp (P)</option> + <option value="Pro->Tyr (P)">Pro->Tyr (P)</option> + <option value="Pro->Val (P)">Pro->Val (P)</option> + <option value="Pro->Xle (P)">Pro->Xle (P)</option> + <option value="Pro->pyro-Glu (P)">Pro->pyro-Glu (P)</option> + <option value="Propargylamine (C-term)">Propargylamine (C-term)</option> + <option value="Propargylamine (D)">Propargylamine (D)</option> + <option value="Propargylamine (E)">Propargylamine (E)</option> + <option value="Propionamide (C)">Propionamide (C)</option> + <option value="Propionamide (K)">Propionamide (K)</option> + <option value="Propionamide (N-term)">Propionamide (N-term)</option> + <option value="Propionamide:2H(3) (C)">Propionamide:2H(3) (C)</option> + <option value="Propionyl (K)">Propionyl (K)</option> + <option value="Propionyl (N-term)">Propionyl (N-term)</option> + <option value="Propionyl (S)">Propionyl (S)</option> + <option value="Propionyl (T)">Propionyl (T)</option> + <option value="Propionyl:13C(3) (K)">Propionyl:13C(3) (K)</option> + <option value="Propionyl:13C(3) (N-term)">Propionyl:13C(3) (N-term)</option> + <option value="Propiophenone (C)">Propiophenone (C)</option> + <option value="Propiophenone (H)">Propiophenone (H)</option> + <option value="Propiophenone (K)">Propiophenone (K)</option> + <option value="Propiophenone (R)">Propiophenone (R)</option> + <option value="Propiophenone (S)">Propiophenone (S)</option> + <option value="Propiophenone (T)">Propiophenone (T)</option> + <option value="Propiophenone (W)">Propiophenone (W)</option> + <option value="Propyl (K)">Propyl (K)</option> + <option value="Propyl (N-term)">Propyl (N-term)</option> + <option value="Propyl:2H(6) (K)">Propyl:2H(6) (K)</option> + <option value="Propyl:2H(6) (N-term)">Propyl:2H(6) (N-term)</option> + <option value="PropylNAGthiazoline (C)">PropylNAGthiazoline (C)</option> + <option value="Puromycin (C-term)">Puromycin (C-term)</option> + <option value="PyMIC (N-term)">PyMIC (N-term)</option> + <option value="PyridoxalPhosphate (K)">PyridoxalPhosphate (K)</option> + <option value="PyridoxalPhosphateH2 (K)">PyridoxalPhosphateH2 (K)</option> + <option value="Pyridylacetyl (K)">Pyridylacetyl (K)</option> + <option value="Pyridylacetyl (N-term)">Pyridylacetyl (N-term)</option> + <option value="Pyridylethyl (C)">Pyridylethyl (C)</option> + <option value="Pyro-carbamidomethyl (N-term C)">Pyro-carbamidomethyl (N-term C)</option> + <option value="PyruvicAcidIminyl (K)">PyruvicAcidIminyl (K)</option> + <option value="QAT (C)">QAT (C)</option> + <option value="QAT:2H(3) (C)">QAT:2H(3) (C)</option> + <option value="QEQTGG (K)">QEQTGG (K)</option> + <option value="QQQTGG (K)">QQQTGG (K)</option> + <option value="QTGG (K)">QTGG (K)</option> + <option value="Quinone (W)">Quinone (W)</option> + <option value="Quinone (Y)">Quinone (Y)</option> + <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> + <option value="RNPXlink2 (F)">RNPXlink2 (F)</option> + <option value="RNPXlink2 (K)">RNPXlink2 (K)</option> + <option value="RNPXlink2 (L)">RNPXlink2 (L)</option> + <option value="RNPXlink3 (C)">RNPXlink3 (C)</option> + <option value="RNPXlink3 (F)">RNPXlink3 (F)</option> + <option value="RNPXlink4 (C)">RNPXlink4 (C)</option> + <option value="RNPXlink5 (F)">RNPXlink5 (F)</option> + <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option> + <option value="Retinylidene (K)">Retinylidene (K)</option> + <option value="SMA (K)">SMA (K)</option> + <option value="SMA (N-term)">SMA (N-term)</option> + <option value="SMCC-maleimide (C)">SMCC-maleimide (C)</option> + <option value="SPITC (K)">SPITC (K)</option> + <option value="SPITC (N-term)">SPITC (N-term)</option> + <option value="SPITC:13C(6) (K)">SPITC:13C(6) (K)</option> + <option value="SPITC:13C(6) (N-term)">SPITC:13C(6) (N-term)</option> + <option value="SUMO2135 (K)">SUMO2135 (K)</option> + <option value="SUMO3549 (K)">SUMO3549 (K)</option> + <option value="Saligenin (H)">Saligenin (H)</option> + <option value="Saligenin (K)">Saligenin (K)</option> + <option value="SecCarbamidomethyl (C)">SecCarbamidomethyl (C)</option> + <option value="SecNEM (C)">SecNEM (C)</option> + <option value="SecNEM:2H(5) (C)">SecNEM:2H(5) (C)</option> + <option value="Ser->Ala (S)">Ser->Ala (S)</option> + <option value="Ser->Arg (S)">Ser->Arg (S)</option> + <option value="Ser->Asn (S)">Ser->Asn (S)</option> + <option value="Ser->Asp (S)">Ser->Asp (S)</option> + <option value="Ser->Cys (S)">Ser->Cys (S)</option> + <option value="Ser->Gln (S)">Ser->Gln (S)</option> + <option value="Ser->Glu (S)">Ser->Glu (S)</option> + <option value="Ser->Gly (S)">Ser->Gly (S)</option> + <option value="Ser->His (S)">Ser->His (S)</option> + <option value="Ser->Lys (S)">Ser->Lys (S)</option> + <option value="Ser->Met (S)">Ser->Met (S)</option> + <option value="Ser->Phe (S)">Ser->Phe (S)</option> + <option value="Ser->Pro (S)">Ser->Pro (S)</option> + <option value="Ser->Thr (S)">Ser->Thr (S)</option> + <option value="Ser->Trp (S)">Ser->Trp (S)</option> + <option value="Ser->Tyr (S)">Ser->Tyr (S)</option> + <option value="Ser->Val (S)">Ser->Val (S)</option> + <option value="Ser->Xle (S)">Ser->Xle (S)</option> + <option value="Succinyl (K)">Succinyl (K)</option> + <option value="Succinyl (N-term)">Succinyl (N-term)</option> + <option value="Succinyl:13C(4) (K)">Succinyl:13C(4) (K)</option> + <option value="Succinyl:13C(4) (N-term)">Succinyl:13C(4) (N-term)</option> + <option value="Succinyl:2H(4) (K)">Succinyl:2H(4) (K)</option> + <option value="Succinyl:2H(4) (N-term)">Succinyl:2H(4) (N-term)</option> + <option value="SulfanilicAcid (C-term)">SulfanilicAcid (C-term)</option> + <option value="SulfanilicAcid (D)">SulfanilicAcid (D)</option> + <option value="SulfanilicAcid (E)">SulfanilicAcid (E)</option> + <option value="SulfanilicAcid:13C(6) (C-term)">SulfanilicAcid:13C(6) (C-term)</option> + <option value="SulfanilicAcid:13C(6) (D)">SulfanilicAcid:13C(6) (D)</option> + <option value="SulfanilicAcid:13C(6) (E)">SulfanilicAcid:13C(6) (E)</option> + <option value="Sulfide (C)">Sulfide (C)</option> + <option value="Sulfide (D)">Sulfide (D)</option> + <option value="Sulfide (W)">Sulfide (W)</option> + <option value="Sulfo (C)">Sulfo (C)</option> + <option value="Sulfo (S)">Sulfo (S)</option> + <option value="Sulfo (T)">Sulfo (T)</option> + <option value="Sulfo (Y)">Sulfo (Y)</option> + <option value="Sulfo-NHS-LC-LC-Biotin (K)">Sulfo-NHS-LC-LC-Biotin (K)</option> + <option value="Sulfo-NHS-LC-LC-Biotin (N-term)">Sulfo-NHS-LC-LC-Biotin (N-term)</option> + <option value="SulfoGMBS (C)">SulfoGMBS (C)</option> + <option value="SulfurDioxide (C)">SulfurDioxide (C)</option> + <option value="TAMRA-FP (S)">TAMRA-FP (S)</option> + <option value="TAMRA-FP (Y)">TAMRA-FP (Y)</option> + <option value="TMAB (K)">TMAB (K)</option> + <option value="TMAB (N-term)">TMAB (N-term)</option> + <option value="TMAB:2H(9) (K)">TMAB:2H(9) (K)</option> + <option value="TMAB:2H(9) (N-term)">TMAB:2H(9) (N-term)</option> + <option value="TMPP-Ac (N-term)">TMPP-Ac (N-term)</option> + <option value="TMT (H)">TMT (H)</option> + <option value="TMT (K)">TMT (K)</option> + <option value="TMT (N-term)">TMT (N-term)</option> + <option value="TMT (S)">TMT (S)</option> + <option value="TMT (T)">TMT (T)</option> + <option value="TMT2plex (H)">TMT2plex (H)</option> + <option value="TMT2plex (K)">TMT2plex (K)</option> + <option value="TMT2plex (N-term)">TMT2plex (N-term)</option> + <option value="TMT2plex (S)">TMT2plex (S)</option> + <option value="TMT2plex (T)">TMT2plex (T)</option> + <option value="TMT6plex (H)">TMT6plex (H)</option> + <option value="TMT6plex (K)">TMT6plex (K)</option> + <option value="TMT6plex (N-term)">TMT6plex (N-term)</option> + <option value="TMT6plex (S)">TMT6plex (S)</option> + <option value="TMT6plex (T)">TMT6plex (T)</option> + <option value="TNBS (K)">TNBS (K)</option> + <option value="TNBS (N-term)">TNBS (N-term)</option> + <option value="Thiadiazole (C)">Thiadiazole (C)</option> + <option value="Thiazolidine (N-term C)">Thiazolidine (N-term C)</option> + <option value="Thioacyl (K)">Thioacyl (K)</option> + <option value="Thioacyl (N-term)">Thioacyl (N-term)</option> + <option value="Thiophos-S-S-biotin (S)">Thiophos-S-S-biotin (S)</option> + <option value="Thiophos-S-S-biotin (T)">Thiophos-S-S-biotin (T)</option> + <option value="Thiophos-S-S-biotin (Y)">Thiophos-S-S-biotin (Y)</option> + <option value="Thiophospho (S)">Thiophospho (S)</option> + <option value="Thiophospho (T)">Thiophospho (T)</option> + <option value="Thiophospho (Y)">Thiophospho (Y)</option> + <option value="Thr->Ala (T)">Thr->Ala (T)</option> + <option value="Thr->Arg (T)">Thr->Arg (T)</option> + <option value="Thr->Asn (T)">Thr->Asn (T)</option> + <option value="Thr->Asp (T)">Thr->Asp (T)</option> + <option value="Thr->Cys (T)">Thr->Cys (T)</option> + <option value="Thr->Gln (T)">Thr->Gln (T)</option> + <option value="Thr->Glu (T)">Thr->Glu (T)</option> + <option value="Thr->Gly (T)">Thr->Gly (T)</option> + <option value="Thr->His (T)">Thr->His (T)</option> + <option value="Thr->Lys (T)">Thr->Lys (T)</option> + <option value="Thr->Met (T)">Thr->Met (T)</option> + <option value="Thr->Phe (T)">Thr->Phe (T)</option> + <option value="Thr->Pro (T)">Thr->Pro (T)</option> + <option value="Thr->Ser (T)">Thr->Ser (T)</option> + <option value="Thr->Trp (T)">Thr->Trp (T)</option> + <option value="Thr->Tyr (T)">Thr->Tyr (T)</option> + <option value="Thr->Val (T)">Thr->Val (T)</option> + <option value="Thr->Xle (T)">Thr->Xle (T)</option> + <option value="Thrbiotinhydrazide (T)">Thrbiotinhydrazide (T)</option> + <option value="Thyroxine (Y)">Thyroxine (Y)</option> + <option value="Triiodo (Y)">Triiodo (Y)</option> + <option value="Triiodothyronine (Y)">Triiodothyronine (Y)</option> + <option value="Trimethyl (K)">Trimethyl (K)</option> + <option value="Trimethyl (R)">Trimethyl (R)</option> + <option value="Trimethyl:13C(3)2H(9) (K)">Trimethyl:13C(3)2H(9) (K)</option> + <option value="Trimethyl:13C(3)2H(9) (R)">Trimethyl:13C(3)2H(9) (R)</option> + <option value="Trimethyl:2H(9) (K)">Trimethyl:2H(9) (K)</option> + <option value="Trimethyl:2H(9) (R)">Trimethyl:2H(9) (R)</option> + <option value="Trioxidation (C)">Trioxidation (C)</option> + <option value="Trioxidation (W)">Trioxidation (W)</option> + <option value="Trioxidation (Y)">Trioxidation (Y)</option> + <option value="Trp->Ala (W)">Trp->Ala (W)</option> + <option value="Trp->Arg (W)">Trp->Arg (W)</option> + <option value="Trp->Asn (W)">Trp->Asn (W)</option> + <option value="Trp->Asp (W)">Trp->Asp (W)</option> + <option value="Trp->Cys (W)">Trp->Cys (W)</option> + <option value="Trp->Gln (W)">Trp->Gln (W)</option> + <option value="Trp->Glu (W)">Trp->Glu (W)</option> + <option value="Trp->Gly (W)">Trp->Gly (W)</option> + <option value="Trp->His (W)">Trp->His (W)</option> + <option value="Trp->Hydroxykynurenin (W)">Trp->Hydroxykynurenin (W)</option> + <option value="Trp->Kynurenin (W)">Trp->Kynurenin (W)</option> + <option value="Trp->Lys (W)">Trp->Lys (W)</option> + <option value="Trp->Met (W)">Trp->Met (W)</option> + <option value="Trp->Oxolactone (W)">Trp->Oxolactone (W)</option> + <option value="Trp->Phe (W)">Trp->Phe (W)</option> + <option value="Trp->Pro (W)">Trp->Pro (W)</option> + <option value="Trp->Ser (W)">Trp->Ser (W)</option> + <option value="Trp->Thr (W)">Trp->Thr (W)</option> + <option value="Trp->Tyr (W)">Trp->Tyr (W)</option> + <option value="Trp->Val (W)">Trp->Val (W)</option> + <option value="Trp->Xle (W)">Trp->Xle (W)</option> + <option value="Tyr->Ala (Y)">Tyr->Ala (Y)</option> + <option value="Tyr->Arg (Y)">Tyr->Arg (Y)</option> + <option value="Tyr->Asn (Y)">Tyr->Asn (Y)</option> + <option value="Tyr->Asp (Y)">Tyr->Asp (Y)</option> + <option value="Tyr->Cys (Y)">Tyr->Cys (Y)</option> + <option value="Tyr->Dha (Y)">Tyr->Dha (Y)</option> + <option value="Tyr->Gln (Y)">Tyr->Gln (Y)</option> + <option value="Tyr->Glu (Y)">Tyr->Glu (Y)</option> + <option value="Tyr->Gly (Y)">Tyr->Gly (Y)</option> + <option value="Tyr->His (Y)">Tyr->His (Y)</option> + <option value="Tyr->Lys (Y)">Tyr->Lys (Y)</option> + <option value="Tyr->Met (Y)">Tyr->Met (Y)</option> + <option value="Tyr->Phe (Y)">Tyr->Phe (Y)</option> + <option value="Tyr->Pro (Y)">Tyr->Pro (Y)</option> + <option value="Tyr->Ser (Y)">Tyr->Ser (Y)</option> + <option value="Tyr->Thr (Y)">Tyr->Thr (Y)</option> + <option value="Tyr->Trp (Y)">Tyr->Trp (Y)</option> + <option value="Tyr->Val (Y)">Tyr->Val (Y)</option> + <option value="Tyr->Xle (Y)">Tyr->Xle (Y)</option> + <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> + <option value="Ub-VME (C)">Ub-VME (C)</option> + <option value="Ub-amide (C)">Ub-amide (C)</option> + <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> + <option value="UgiJoullie (D)">UgiJoullie (D)</option> + <option value="UgiJoullie (E)">UgiJoullie (E)</option> + <option value="UgiJoullieProGly (D)">UgiJoullieProGly (D)</option> + <option value="UgiJoullieProGly (E)">UgiJoullieProGly (E)</option> + <option value="UgiJoullieProGlyProGly (D)">UgiJoullieProGlyProGly (D)</option> + <option value="UgiJoullieProGlyProGly (E)">UgiJoullieProGlyProGly (E)</option> + <option value="VFQQQTGG (K)">VFQQQTGG (K)</option> + <option value="VIEVYQEQTGG (K)">VIEVYQEQTGG (K)</option> + <option value="Val->Ala (V)">Val->Ala (V)</option> + <option value="Val->Arg (V)">Val->Arg (V)</option> + <option value="Val->Asn (V)">Val->Asn (V)</option> + <option value="Val->Asp (V)">Val->Asp (V)</option> + <option value="Val->Cys (V)">Val->Cys (V)</option> + <option value="Val->Gln (V)">Val->Gln (V)</option> + <option value="Val->Glu (V)">Val->Glu (V)</option> + <option value="Val->Gly (V)">Val->Gly (V)</option> + <option value="Val->His (V)">Val->His (V)</option> + <option value="Val->Lys (V)">Val->Lys (V)</option> + <option value="Val->Met (V)">Val->Met (V)</option> + <option value="Val->Phe (V)">Val->Phe (V)</option> + <option value="Val->Pro (V)">Val->Pro (V)</option> + <option value="Val->Ser (V)">Val->Ser (V)</option> + <option value="Val->Thr (V)">Val->Thr (V)</option> + <option value="Val->Trp (V)">Val->Trp (V)</option> + <option value="Val->Tyr (V)">Val->Tyr (V)</option> + <option value="Val->Xle (V)">Val->Xle (V)</option> + <option value="Withaferin (C)">Withaferin (C)</option> + <option value="Xle->Ala (I)">Xle->Ala (I)</option> + <option value="Xle->Ala (L)">Xle->Ala (L)</option> + <option value="Xle->Arg (I)">Xle->Arg (I)</option> + <option value="Xle->Arg (L)">Xle->Arg (L)</option> + <option value="Xle->Asn (I)">Xle->Asn (I)</option> + <option value="Xle->Asn (L)">Xle->Asn (L)</option> + <option value="Xle->Asp (I)">Xle->Asp (I)</option> + <option value="Xle->Asp (L)">Xle->Asp (L)</option> + <option value="Xle->Cys (I)">Xle->Cys (I)</option> + <option value="Xle->Cys (L)">Xle->Cys (L)</option> + <option value="Xle->Gln (I)">Xle->Gln (I)</option> + <option value="Xle->Gln (L)">Xle->Gln (L)</option> + <option value="Xle->Glu (I)">Xle->Glu (I)</option> + <option value="Xle->Glu (L)">Xle->Glu (L)</option> + <option value="Xle->Gly (I)">Xle->Gly (I)</option> + <option value="Xle->Gly (L)">Xle->Gly (L)</option> + <option value="Xle->His (I)">Xle->His (I)</option> + <option value="Xle->His (L)">Xle->His (L)</option> + <option value="Xle->Lys (I)">Xle->Lys (I)</option> + <option value="Xle->Lys (L)">Xle->Lys (L)</option> + <option value="Xle->Met (I)">Xle->Met (I)</option> + <option value="Xle->Met (L)">Xle->Met (L)</option> + <option value="Xle->Phe (I)">Xle->Phe (I)</option> + <option value="Xle->Phe (L)">Xle->Phe (L)</option> + <option value="Xle->Pro (I)">Xle->Pro (I)</option> + <option value="Xle->Pro (L)">Xle->Pro (L)</option> + <option value="Xle->Ser (I)">Xle->Ser (I)</option> + <option value="Xle->Ser (L)">Xle->Ser (L)</option> + <option value="Xle->Thr (I)">Xle->Thr (I)</option> + <option value="Xle->Thr (L)">Xle->Thr (L)</option> + <option value="Xle->Trp (I)">Xle->Trp (I)</option> + <option value="Xle->Trp (L)">Xle->Trp (L)</option> + <option value="Xle->Tyr (I)">Xle->Tyr (I)</option> + <option value="Xle->Tyr (L)">Xle->Tyr (L)</option> + <option value="Xle->Val (I)">Xle->Val (I)</option> + <option value="Xle->Val (L)">Xle->Val (L)</option> + <option value="Xlink:B10621 (C)">Xlink:B10621 (C)</option> + <option value="Xlink:DMP (K)">Xlink:DMP (K)</option> + <option value="Xlink:DMP-de (K)">Xlink:DMP-de (K)</option> + <option value="Xlink:DMP-s (K)">Xlink:DMP-s (K)</option> + <option value="Xlink:DSS (K)">Xlink:DSS (K)</option> + <option value="Xlink:DST (K)">Xlink:DST (K)</option> + <option value="Xlink:DTSSP (K)">Xlink:DTSSP (K)</option> + <option value="Xlink:EGS (K)">Xlink:EGS (K)</option> + <option value="Xlink:EGScleaved (K)">Xlink:EGScleaved (K)</option> + <option value="Xlink:SMCC (C)">Xlink:SMCC (C)</option> + <option value="Xlink:SSD (K)">Xlink:SSD (K)</option> + <option value="ZGB (K)">ZGB (K)</option> + <option value="ZGB (N-term)">ZGB (N-term)</option> + <option value="a-type-ion (C-term)">a-type-ion (C-term)</option> + <option value="azole (C)">azole (C)</option> + <option value="azole (S)">azole (S)</option> + <option value="benzylguanidine (K)">benzylguanidine (K)</option> + <option value="biotinAcrolein298 (C)">biotinAcrolein298 (C)</option> + <option value="biotinAcrolein298 (H)">biotinAcrolein298 (H)</option> + <option value="biotinAcrolein298 (K)">biotinAcrolein298 (K)</option> + <option value="bisANS-sulfonates (K)">bisANS-sulfonates (K)</option> + <option value="bisANS-sulfonates (S)">bisANS-sulfonates (S)</option> + <option value="bisANS-sulfonates (T)">bisANS-sulfonates (T)</option> + <option value="cGMP (C)">cGMP (C)</option> + <option value="cGMP (S)">cGMP (S)</option> + <option value="cGMP+RMP-loss (C)">cGMP+RMP-loss (C)</option> + <option value="cGMP+RMP-loss (S)">cGMP+RMP-loss (S)</option> + <option value="cysTMT (C)">cysTMT (C)</option> + <option value="cysTMT6plex (C)">cysTMT6plex (C)</option> + <option value="dHex (N)">dHex (N)</option> + <option value="dHex (S)">dHex (S)</option> + <option value="dHex (T)">dHex (T)</option> + <option value="dHex(1)Hex(1) (S)">dHex(1)Hex(1) (S)</option> + <option value="dHex(1)Hex(1) (T)">dHex(1)Hex(1) (T)</option> + <option value="dHex(1)Hex(2) (S)">dHex(1)Hex(2) (S)</option> + <option value="dHex(1)Hex(2) (T)">dHex(1)Hex(2) (T)</option> + <option value="dHex(1)Hex(3) (S)">dHex(1)Hex(3) (S)</option> + <option value="dHex(1)Hex(3) (T)">dHex(1)Hex(3) (T)</option> + <option value="dHex(1)Hex(3)HexNAc(4) (N)">dHex(1)Hex(3)HexNAc(4) (N)</option> + <option value="dHex(1)Hex(4) (S)">dHex(1)Hex(4) (S)</option> + <option value="dHex(1)Hex(4) (T)">dHex(1)Hex(4) (T)</option> + <option value="dHex(1)Hex(4)HexNAc(4) (N)">dHex(1)Hex(4)HexNAc(4) (N)</option> + <option value="dHex(1)Hex(5) (S)">dHex(1)Hex(5) (S)</option> + <option value="dHex(1)Hex(5) (T)">dHex(1)Hex(5) (T)</option> + <option value="dHex(1)Hex(5)HexNAc(4) (N)">dHex(1)Hex(5)HexNAc(4) (N)</option> + <option value="dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N)">dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N)</option> + <option value="dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N)">dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N)</option> + <option value="dHex(1)Hex(6) (S)">dHex(1)Hex(6) (S)</option> + <option value="dHex(1)Hex(6) (T)">dHex(1)Hex(6) (T)</option> + <option value="dNIC (K)">dNIC (K)</option> + <option value="dNIC (N-term)">dNIC (N-term)</option> + <option value="dichlorination (C)">dichlorination (C)</option> + <option value="dichlorination (Y)">dichlorination (Y)</option> + <option value="ethylamino (S)">ethylamino (S)</option> + <option value="ethylamino (T)">ethylamino (T)</option> + <option value="ethylsulfonylethyl (C)">ethylsulfonylethyl (C)</option> + <option value="ethylsulfonylethyl (H)">ethylsulfonylethyl (H)</option> + <option value="ethylsulfonylethyl (K)">ethylsulfonylethyl (K)</option> + <option value="glucosone (R)">glucosone (R)</option> + <option value="glycidamide (K)">glycidamide (K)</option> + <option value="glycidamide (N-term)">glycidamide (N-term)</option> + <option value="iTRAQ4plex (H)">iTRAQ4plex (H)</option> + <option value="iTRAQ4plex (K)">iTRAQ4plex (K)</option> + <option value="iTRAQ4plex (N-term)">iTRAQ4plex (N-term)</option> + <option value="iTRAQ4plex (S)">iTRAQ4plex (S)</option> + <option value="iTRAQ4plex (T)">iTRAQ4plex (T)</option> + <option value="iTRAQ4plex (Y)">iTRAQ4plex (Y)</option> + <option value="iTRAQ4plex114 (K)">iTRAQ4plex114 (K)</option> + <option value="iTRAQ4plex114 (N-term)">iTRAQ4plex114 (N-term)</option> + <option value="iTRAQ4plex114 (Y)">iTRAQ4plex114 (Y)</option> + <option value="iTRAQ4plex115 (K)">iTRAQ4plex115 (K)</option> + <option value="iTRAQ4plex115 (N-term)">iTRAQ4plex115 (N-term)</option> + <option value="iTRAQ4plex115 (Y)">iTRAQ4plex115 (Y)</option> + <option value="iTRAQ8plex (H)">iTRAQ8plex (H)</option> + <option value="iTRAQ8plex (K)">iTRAQ8plex (K)</option> + <option value="iTRAQ8plex (N-term)">iTRAQ8plex (N-term)</option> + <option value="iTRAQ8plex (S)">iTRAQ8plex (S)</option> + <option value="iTRAQ8plex (T)">iTRAQ8plex (T)</option> + <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> + <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> + <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> + <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> + <option value="iodoTMT (C)">iodoTMT (C)</option> + <option value="iodoTMT (D)">iodoTMT (D)</option> + <option value="iodoTMT (E)">iodoTMT (E)</option> + <option value="iodoTMT (H)">iodoTMT (H)</option> + <option value="iodoTMT (K)">iodoTMT (K)</option> + <option value="iodoTMT6plex (C)">iodoTMT6plex (C)</option> + <option value="iodoTMT6plex (D)">iodoTMT6plex (D)</option> + <option value="iodoTMT6plex (E)">iodoTMT6plex (E)</option> + <option value="iodoTMT6plex (H)">iodoTMT6plex (H)</option> + <option value="iodoTMT6plex (K)">iodoTMT6plex (K)</option> + <option value="lapachenole (C)">lapachenole (C)</option> + <option value="mTRAQ (H)">mTRAQ (H)</option> + <option value="mTRAQ (K)">mTRAQ (K)</option> + <option value="mTRAQ (N-term)">mTRAQ (N-term)</option> + <option value="mTRAQ (S)">mTRAQ (S)</option> + <option value="mTRAQ (T)">mTRAQ (T)</option> + <option value="mTRAQ (Y)">mTRAQ (Y)</option> + <option value="mTRAQ:13C(3)15N(1) (H)">mTRAQ:13C(3)15N(1) (H)</option> + <option value="mTRAQ:13C(3)15N(1) (K)">mTRAQ:13C(3)15N(1) (K)</option> + <option value="mTRAQ:13C(3)15N(1) (N-term)">mTRAQ:13C(3)15N(1) (N-term)</option> + <option value="mTRAQ:13C(3)15N(1) (S)">mTRAQ:13C(3)15N(1) (S)</option> + <option value="mTRAQ:13C(3)15N(1) (T)">mTRAQ:13C(3)15N(1) (T)</option> + <option value="mTRAQ:13C(3)15N(1) (Y)">mTRAQ:13C(3)15N(1) (Y)</option> + <option value="mTRAQ:13C(6)15N(2) (H)">mTRAQ:13C(6)15N(2) (H)</option> + <option value="mTRAQ:13C(6)15N(2) (K)">mTRAQ:13C(6)15N(2) (K)</option> + <option value="mTRAQ:13C(6)15N(2) (N-term)">mTRAQ:13C(6)15N(2) (N-term)</option> + <option value="mTRAQ:13C(6)15N(2) (S)">mTRAQ:13C(6)15N(2) (S)</option> + <option value="mTRAQ:13C(6)15N(2) (T)">mTRAQ:13C(6)15N(2) (T)</option> + <option value="mTRAQ:13C(6)15N(2) (Y)">mTRAQ:13C(6)15N(2) (Y)</option> + <option value="maleimide (C)">maleimide (C)</option> + <option value="maleimide (K)">maleimide (K)</option> + <option value="maleimide3 (C)">maleimide3 (C)</option> + <option value="maleimide3 (K)">maleimide3 (K)</option> + <option value="maleimide5 (C)">maleimide5 (C)</option> + <option value="maleimide5 (K)">maleimide5 (K)</option> + <option value="methylsulfonylethyl (C)">methylsulfonylethyl (C)</option> + <option value="methylsulfonylethyl (H)">methylsulfonylethyl (H)</option> + <option value="methylsulfonylethyl (K)">methylsulfonylethyl (K)</option> + <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> + <option value="phosphoRibosyl (D)">phosphoRibosyl (D)</option> + <option value="phosphoRibosyl (E)">phosphoRibosyl (E)</option> + <option value="phosphoRibosyl (R)">phosphoRibosyl (R)</option> + <option value="probiotinhydrazide (P)">probiotinhydrazide (P)</option> + <option value="pupylation (K)">pupylation (K)</option> + <option value="pyrophospho (S)">pyrophospho (S)</option> + <option value="pyrophospho (T)">pyrophospho (T)</option> + <option value="sulfo+amino (Y)">sulfo+amino (Y)</option> + <option value="thioacylPA (K)">thioacylPA (K)</option> + <option value="trifluoro (L)">trifluoro (L)</option> + </param> + </repeat> + <repeat name="rep_param_variable_modifications" min="0" max="1" title="param_variable_modifications"> + <param name="param_variable_modifications" type="select" optional="True" label="Variable modifications, specified using UniMod (www.unimod.org) terms," help="(-variable_modifications) e.g. 'Oxidation (M)'"> + <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> + <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> + <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> + <option value="2-succinyl (C)">2-succinyl (C)</option> + <option value="2HPG (R)">2HPG (R)</option> + <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> + <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> + <option value="3sulfo (N-term)">3sulfo (N-term)</option> + <option value="4-ONE (C)">4-ONE (C)</option> + <option value="4-ONE (H)">4-ONE (H)</option> + <option value="4-ONE (K)">4-ONE (K)</option> + <option value="4-ONE+Delta:H(-2)O(-1) (C)">4-ONE+Delta:H(-2)O(-1) (C)</option> + <option value="4-ONE+Delta:H(-2)O(-1) (H)">4-ONE+Delta:H(-2)O(-1) (H)</option> + <option value="4-ONE+Delta:H(-2)O(-1) (K)">4-ONE+Delta:H(-2)O(-1) (K)</option> + <option value="4AcAllylGal (C)">4AcAllylGal (C)</option> + <option value="ADP-Ribosyl (C)">ADP-Ribosyl (C)</option> + <option value="ADP-Ribosyl (D)">ADP-Ribosyl (D)</option> + <option value="ADP-Ribosyl (E)">ADP-Ribosyl (E)</option> + <option value="ADP-Ribosyl (K)">ADP-Ribosyl (K)</option> + <option value="ADP-Ribosyl (N)">ADP-Ribosyl (N)</option> + <option value="ADP-Ribosyl (R)">ADP-Ribosyl (R)</option> + <option value="ADP-Ribosyl (S)">ADP-Ribosyl (S)</option> + <option value="AEBS (H)">AEBS (H)</option> + <option value="AEBS (K)">AEBS (K)</option> + <option value="AEBS (S)">AEBS (S)</option> + <option value="AEBS (Y)">AEBS (Y)</option> + <option value="AEC-MAEC (S)">AEC-MAEC (S)</option> + <option value="AEC-MAEC (T)">AEC-MAEC (T)</option> + <option value="AEC-MAEC:2H(4) (S)">AEC-MAEC:2H(4) (S)</option> + <option value="AEC-MAEC:2H(4) (T)">AEC-MAEC:2H(4) (T)</option> + <option value="AHA-Alkyne (M)">AHA-Alkyne (M)</option> + <option value="AHA-Alkyne-KDDDD (M)">AHA-Alkyne-KDDDD (M)</option> + <option value="AHA-SS (M)">AHA-SS (M)</option> + <option value="AHA-SS_CAM (M)">AHA-SS_CAM (M)</option> + <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> + <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> + <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> + <option value="AROD (C)">AROD (C)</option> + <option value="AccQTag (K)">AccQTag (K)</option> + <option value="AccQTag (N-term)">AccQTag (N-term)</option> + <option value="Acetyl (C)">Acetyl (C)</option> + <option value="Acetyl (H)">Acetyl (H)</option> + <option value="Acetyl (K)">Acetyl (K)</option> + <option value="Acetyl (N-term)">Acetyl (N-term)</option> + <option value="Acetyl (S)">Acetyl (S)</option> + <option value="Acetyl (T)">Acetyl (T)</option> + <option value="Acetyl (Y)">Acetyl (Y)</option> + <option value="Acetyl:13C(2) (K)">Acetyl:13C(2) (K)</option> + <option value="Acetyl:2H(3) (H)">Acetyl:2H(3) (H)</option> + <option value="Acetyl:2H(3) (K)">Acetyl:2H(3) (K)</option> + <option value="Acetyl:2H(3) (N-term)">Acetyl:2H(3) (N-term)</option> + <option value="Acetyl:2H(3) (S)">Acetyl:2H(3) (S)</option> + <option value="Acetyl:2H(3) (T)">Acetyl:2H(3) (T)</option> + <option value="Acetyl:2H(3) (Y)">Acetyl:2H(3) (Y)</option> + <option value="Acetyldeoxyhypusine (K)">Acetyldeoxyhypusine (K)</option> + <option value="Acetylhypusine (K)">Acetylhypusine (K)</option> + <option value="Ahx2+Hsl (C-term)">Ahx2+Hsl (C-term)</option> + <option value="Ala->Arg (A)">Ala->Arg (A)</option> + <option value="Ala->Asn (A)">Ala->Asn (A)</option> + <option value="Ala->Asp (A)">Ala->Asp (A)</option> + <option value="Ala->Cys (A)">Ala->Cys (A)</option> + <option value="Ala->Gln (A)">Ala->Gln (A)</option> + <option value="Ala->Glu (A)">Ala->Glu (A)</option> + <option value="Ala->Gly (A)">Ala->Gly (A)</option> + <option value="Ala->His (A)">Ala->His (A)</option> + <option value="Ala->Lys (A)">Ala->Lys (A)</option> + <option value="Ala->Met (A)">Ala->Met (A)</option> + <option value="Ala->Phe (A)">Ala->Phe (A)</option> + <option value="Ala->Pro (A)">Ala->Pro (A)</option> + <option value="Ala->Ser (A)">Ala->Ser (A)</option> + <option value="Ala->Thr (A)">Ala->Thr (A)</option> + <option value="Ala->Trp (A)">Ala->Trp (A)</option> + <option value="Ala->Tyr (A)">Ala->Tyr (A)</option> + <option value="Ala->Val (A)">Ala->Val (A)</option> + <option value="Ala->Xle (A)">Ala->Xle (A)</option> + <option value="Amidated (C-term)">Amidated (C-term)</option> + <option value="Amidine (K)">Amidine (K)</option> + <option value="Amidine (N-term)">Amidine (N-term)</option> + <option value="Amidino (C)">Amidino (C)</option> + <option value="Amino (Y)">Amino (Y)</option> + <option value="Ammonia-loss (N)">Ammonia-loss (N)</option> + <option value="Ammonia-loss (N-term C)">Ammonia-loss (N-term C)</option> + <option value="Ammonium (C-term)">Ammonium (C-term)</option> + <option value="Ammonium (D)">Ammonium (D)</option> + <option value="Ammonium (E)">Ammonium (E)</option> + <option value="Archaeol (C)">Archaeol (C)</option> + <option value="Arg (N-term)">Arg (N-term)</option> + <option value="Arg->Ala (R)">Arg->Ala (R)</option> + <option value="Arg->Asn (R)">Arg->Asn (R)</option> + <option value="Arg->Asp (R)">Arg->Asp (R)</option> + <option value="Arg->Cys (R)">Arg->Cys (R)</option> + <option value="Arg->Gln (R)">Arg->Gln (R)</option> + <option value="Arg->Glu (R)">Arg->Glu (R)</option> + <option value="Arg->GluSA (R)">Arg->GluSA (R)</option> + <option value="Arg->Gly (R)">Arg->Gly (R)</option> + <option value="Arg->His (R)">Arg->His (R)</option> + <option value="Arg->Lys (R)">Arg->Lys (R)</option> + <option value="Arg->Met (R)">Arg->Met (R)</option> + <option value="Arg->Npo (R)">Arg->Npo (R)</option> + <option value="Arg->Orn (R)">Arg->Orn (R)</option> + <option value="Arg->Phe (R)">Arg->Phe (R)</option> + <option value="Arg->Pro (R)">Arg->Pro (R)</option> + <option value="Arg->Ser (R)">Arg->Ser (R)</option> + <option value="Arg->Thr (R)">Arg->Thr (R)</option> + <option value="Arg->Trp (R)">Arg->Trp (R)</option> + <option value="Arg->Tyr (R)">Arg->Tyr (R)</option> + <option value="Arg->Val (R)">Arg->Val (R)</option> + <option value="Arg->Xle (R)">Arg->Xle (R)</option> + <option value="Arg-loss (C-term R)">Arg-loss (C-term R)</option> + <option value="Arg2PG (R)">Arg2PG (R)</option> + <option value="Argbiotinhydrazide (R)">Argbiotinhydrazide (R)</option> + <option value="Asn->Ala (N)">Asn->Ala (N)</option> + <option value="Asn->Arg (N)">Asn->Arg (N)</option> + <option value="Asn->Asp (N)">Asn->Asp (N)</option> + <option value="Asn->Cys (N)">Asn->Cys (N)</option> + <option value="Asn->Gln (N)">Asn->Gln (N)</option> + <option value="Asn->Glu (N)">Asn->Glu (N)</option> + <option value="Asn->Gly (N)">Asn->Gly (N)</option> + <option value="Asn->His (N)">Asn->His (N)</option> + <option value="Asn->Lys (N)">Asn->Lys (N)</option> + <option value="Asn->Met (N)">Asn->Met (N)</option> + <option value="Asn->Phe (N)">Asn->Phe (N)</option> + <option value="Asn->Pro (N)">Asn->Pro (N)</option> + <option value="Asn->Ser (N)">Asn->Ser (N)</option> + <option value="Asn->Thr (N)">Asn->Thr (N)</option> + <option value="Asn->Trp (N)">Asn->Trp (N)</option> + <option value="Asn->Tyr (N)">Asn->Tyr (N)</option> + <option value="Asn->Val (N)">Asn->Val (N)</option> + <option value="Asn->Xle (N)">Asn->Xle (N)</option> + <option value="Asp->Ala (D)">Asp->Ala (D)</option> + <option value="Asp->Arg (D)">Asp->Arg (D)</option> + <option value="Asp->Asn (D)">Asp->Asn (D)</option> + <option value="Asp->Cys (D)">Asp->Cys (D)</option> + <option value="Asp->Gln (D)">Asp->Gln (D)</option> + <option value="Asp->Glu (D)">Asp->Glu (D)</option> + <option value="Asp->Gly (D)">Asp->Gly (D)</option> + <option value="Asp->His (D)">Asp->His (D)</option> + <option value="Asp->Lys (D)">Asp->Lys (D)</option> + <option value="Asp->Met (D)">Asp->Met (D)</option> + <option value="Asp->Phe (D)">Asp->Phe (D)</option> + <option value="Asp->Pro (D)">Asp->Pro (D)</option> + <option value="Asp->Ser (D)">Asp->Ser (D)</option> + <option value="Asp->Thr (D)">Asp->Thr (D)</option> + <option value="Asp->Trp (D)">Asp->Trp (D)</option> + <option value="Asp->Tyr (D)">Asp->Tyr (D)</option> + <option value="Asp->Val (D)">Asp->Val (D)</option> + <option value="Asp->Xle (D)">Asp->Xle (D)</option> + <option value="Atto495Maleimide (C)">Atto495Maleimide (C)</option> + <option value="BADGE (C)">BADGE (C)</option> + <option value="BDMAPP (H)">BDMAPP (H)</option> + <option value="BDMAPP (K)">BDMAPP (K)</option> + <option value="BDMAPP (W)">BDMAPP (W)</option> + <option value="BDMAPP (Y)">BDMAPP (Y)</option> + <option value="BHAc (K)">BHAc (K)</option> + <option value="BHT (C)">BHT (C)</option> + <option value="BHT (H)">BHT (H)</option> + <option value="BHT (K)">BHT (K)</option> + <option value="BHTOH (C)">BHTOH (C)</option> + <option value="BHTOH (H)">BHTOH (H)</option> + <option value="BHTOH (K)">BHTOH (K)</option> + <option value="BITC (C)">BITC (C)</option> + <option value="BITC (K)">BITC (K)</option> + <option value="BITC (N-term)">BITC (N-term)</option> + <option value="BMOE (C)">BMOE (C)</option> + <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> + <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> + <option value="Bacillosamine (N)">Bacillosamine (N)</option> + <option value="Benzoyl (K)">Benzoyl (K)</option> + <option value="Benzoyl (N-term)">Benzoyl (N-term)</option> + <option value="Biotin (K)">Biotin (K)</option> + <option value="Biotin (N-term)">Biotin (N-term)</option> + <option value="Biotin-HPDP (C)">Biotin-HPDP (C)</option> + <option value="Biotin-PEG-PRA (M)">Biotin-PEG-PRA (M)</option> + <option value="Biotin-PEO-Amine (D)">Biotin-PEO-Amine (D)</option> + <option value="Biotin-PEO-Amine (E)">Biotin-PEO-Amine (E)</option> + <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> + <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> + <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> + <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> + <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> + <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> + <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> + <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> + <option value="Biotin:Thermo-21345 (Q)">Biotin:Thermo-21345 (Q)</option> + <option value="Biotin:Thermo-21360 (C-term)">Biotin:Thermo-21360 (C-term)</option> + <option value="Biotin:Thermo-21901+2H2O (C)">Biotin:Thermo-21901+2H2O (C)</option> + <option value="Biotin:Thermo-21901+H2O (C)">Biotin:Thermo-21901+H2O (C)</option> + <option value="Biotin:Thermo-21911 (C)">Biotin:Thermo-21911 (C)</option> + <option value="Biotin:Thermo-33033 (N-term)">Biotin:Thermo-33033 (N-term)</option> + <option value="Biotin:Thermo-33033-H (N-term)">Biotin:Thermo-33033-H (N-term)</option> + <option value="Biotin:Thermo-88310 (K)">Biotin:Thermo-88310 (K)</option> + <option value="Biotin:Thermo-88317 (S)">Biotin:Thermo-88317 (S)</option> + <option value="Biotin:Thermo-88317 (Y)">Biotin:Thermo-88317 (Y)</option> + <option value="BisANS (K)">BisANS (K)</option> + <option value="Bodipy (C)">Bodipy (C)</option> + <option value="Bromo (F)">Bromo (F)</option> + <option value="Bromo (H)">Bromo (H)</option> + <option value="Bromo (W)">Bromo (W)</option> + <option value="Bromo (Y)">Bromo (Y)</option> + <option value="Bromobimane (C)">Bromobimane (C)</option> + <option value="Butyryl (K)">Butyryl (K)</option> + <option value="C8-QAT (K)">C8-QAT (K)</option> + <option value="C8-QAT (N-term)">C8-QAT (N-term)</option> + <option value="CAF (N-term)">CAF (N-term)</option> + <option value="CAMthiopropanoyl (K)">CAMthiopropanoyl (K)</option> + <option value="CHDH (D)">CHDH (D)</option> + <option value="CLIP_TRAQ_2 (K)">CLIP_TRAQ_2 (K)</option> + <option value="CLIP_TRAQ_2 (N-term)">CLIP_TRAQ_2 (N-term)</option> + <option value="CLIP_TRAQ_2 (Y)">CLIP_TRAQ_2 (Y)</option> + <option value="CLIP_TRAQ_3 (K)">CLIP_TRAQ_3 (K)</option> + <option value="CLIP_TRAQ_3 (N-term)">CLIP_TRAQ_3 (N-term)</option> + <option value="CLIP_TRAQ_3 (Y)">CLIP_TRAQ_3 (Y)</option> + <option value="CLIP_TRAQ_4 (K)">CLIP_TRAQ_4 (K)</option> + <option value="CLIP_TRAQ_4 (N-term)">CLIP_TRAQ_4 (N-term)</option> + <option value="CLIP_TRAQ_4 (Y)">CLIP_TRAQ_4 (Y)</option> + <option value="Can-FP-biotin (S)">Can-FP-biotin (S)</option> + <option value="Can-FP-biotin (T)">Can-FP-biotin (T)</option> + <option value="Can-FP-biotin (Y)">Can-FP-biotin (Y)</option> + <option value="Carbamidomethyl (C)">Carbamidomethyl (C)</option> + <option value="Carbamidomethyl (D)">Carbamidomethyl (D)</option> + <option value="Carbamidomethyl (E)">Carbamidomethyl (E)</option> + <option value="Carbamidomethyl (H)">Carbamidomethyl (H)</option> + <option value="Carbamidomethyl (K)">Carbamidomethyl (K)</option> + <option value="Carbamidomethyl (N-term)">Carbamidomethyl (N-term)</option> + <option value="Carbamidomethyl (S)">Carbamidomethyl (S)</option> + <option value="Carbamidomethyl (T)">Carbamidomethyl (T)</option> + <option value="Carbamidomethyl (Y)">Carbamidomethyl (Y)</option> + <option value="CarbamidomethylDTT (C)">CarbamidomethylDTT (C)</option> + <option value="Carbamyl (C)">Carbamyl (C)</option> + <option value="Carbamyl (K)">Carbamyl (K)</option> + <option value="Carbamyl (M)">Carbamyl (M)</option> + <option value="Carbamyl (N-term)">Carbamyl (N-term)</option> + <option value="Carbamyl (R)">Carbamyl (R)</option> + <option value="Carbamyl (S)">Carbamyl (S)</option> + <option value="Carbamyl (T)">Carbamyl (T)</option> + <option value="Carbamyl (Y)">Carbamyl (Y)</option> + <option value="Carbofuran (S)">Carbofuran (S)</option> + <option value="Carboxy (D)">Carboxy (D)</option> + <option value="Carboxy (E)">Carboxy (E)</option> + <option value="Carboxy (K)">Carboxy (K)</option> + <option value="Carboxy (W)">Carboxy (W)</option> + <option value="Carboxyethyl (H)">Carboxyethyl (H)</option> + <option value="Carboxyethyl (K)">Carboxyethyl (K)</option> + <option value="Carboxymethyl (C)">Carboxymethyl (C)</option> + <option value="Carboxymethyl (K)">Carboxymethyl (K)</option> + <option value="Carboxymethyl (N-term)">Carboxymethyl (N-term)</option> + <option value="Carboxymethyl (W)">Carboxymethyl (W)</option> + <option value="Carboxymethyl:13C(2) (C)">Carboxymethyl:13C(2) (C)</option> + <option value="CarboxymethylDMAP (N-term)">CarboxymethylDMAP (N-term)</option> + <option value="CarboxymethylDTT (C)">CarboxymethylDTT (C)</option> + <option value="Cation:Ag (C-term)">Cation:Ag (C-term)</option> + <option value="Cation:Ag (D)">Cation:Ag (D)</option> + <option value="Cation:Ag (E)">Cation:Ag (E)</option> + <option value="Cation:Ca[II] (C-term)">Cation:Ca[II] (C-term)</option> + <option value="Cation:Ca[II] (D)">Cation:Ca[II] (D)</option> + <option value="Cation:Ca[II] (E)">Cation:Ca[II] (E)</option> + <option value="Cation:Cu[I] (C-term)">Cation:Cu[I] (C-term)</option> + <option value="Cation:Cu[I] (D)">Cation:Cu[I] (D)</option> + <option value="Cation:Cu[I] (E)">Cation:Cu[I] (E)</option> + <option value="Cation:Fe[II] (C-term)">Cation:Fe[II] (C-term)</option> + <option value="Cation:Fe[II] (D)">Cation:Fe[II] (D)</option> + <option value="Cation:Fe[II] (E)">Cation:Fe[II] (E)</option> + <option value="Cation:K (C-term)">Cation:K (C-term)</option> + <option value="Cation:K (D)">Cation:K (D)</option> + <option value="Cation:K (E)">Cation:K (E)</option> + <option value="Cation:Li (C-term)">Cation:Li (C-term)</option> + <option value="Cation:Li (D)">Cation:Li (D)</option> + <option value="Cation:Li (E)">Cation:Li (E)</option> + <option value="Cation:Mg[II] (C-term)">Cation:Mg[II] (C-term)</option> + <option value="Cation:Mg[II] (D)">Cation:Mg[II] (D)</option> + <option value="Cation:Mg[II] (E)">Cation:Mg[II] (E)</option> + <option value="Cation:Na (C-term)">Cation:Na (C-term)</option> + <option value="Cation:Na (D)">Cation:Na (D)</option> + <option value="Cation:Na (E)">Cation:Na (E)</option> + <option value="Cation:Ni[II] (C-term)">Cation:Ni[II] (C-term)</option> + <option value="Cation:Ni[II] (D)">Cation:Ni[II] (D)</option> + <option value="Cation:Ni[II] (E)">Cation:Ni[II] (E)</option> + <option value="Cation:Zn[II] (C-term)">Cation:Zn[II] (C-term)</option> + <option value="Cation:Zn[II] (D)">Cation:Zn[II] (D)</option> + <option value="Cation:Zn[II] (E)">Cation:Zn[II] (E)</option> + <option value="Chlorination (Y)">Chlorination (Y)</option> + <option value="Chlorpyrifos (S)">Chlorpyrifos (S)</option> + <option value="Chlorpyrifos (T)">Chlorpyrifos (T)</option> + <option value="Chlorpyrifos (Y)">Chlorpyrifos (Y)</option> + <option value="CoenzymeA (C)">CoenzymeA (C)</option> + <option value="CresylSaligeninPhosphate (H)">CresylSaligeninPhosphate (H)</option> + <option value="CresylSaligeninPhosphate (K)">CresylSaligeninPhosphate (K)</option> + <option value="CresylSaligeninPhosphate (R)">CresylSaligeninPhosphate (R)</option> + <option value="CresylSaligeninPhosphate (S)">CresylSaligeninPhosphate (S)</option> + <option value="CresylSaligeninPhosphate (T)">CresylSaligeninPhosphate (T)</option> + <option value="CresylSaligeninPhosphate (Y)">CresylSaligeninPhosphate (Y)</option> + <option value="Cresylphosphate (H)">Cresylphosphate (H)</option> + <option value="Cresylphosphate (K)">Cresylphosphate (K)</option> + <option value="Cresylphosphate (R)">Cresylphosphate (R)</option> + <option value="Cresylphosphate (S)">Cresylphosphate (S)</option> + <option value="Cresylphosphate (T)">Cresylphosphate (T)</option> + <option value="Cresylphosphate (Y)">Cresylphosphate (Y)</option> + <option value="Crotonaldehyde (C)">Crotonaldehyde (C)</option> + <option value="Crotonaldehyde (H)">Crotonaldehyde (H)</option> + <option value="Crotonaldehyde (K)">Crotonaldehyde (K)</option> + <option value="Crotonyl (K)">Crotonyl (K)</option> + <option value="CuSMo (C)">CuSMo (C)</option> + <option value="Cy3-maleimide (C)">Cy3-maleimide (C)</option> + <option value="Cy3b-maleimide (C)">Cy3b-maleimide (C)</option> + <option value="CyDye-Cy3 (C)">CyDye-Cy3 (C)</option> + <option value="CyDye-Cy5 (C)">CyDye-Cy5 (C)</option> + <option value="Cyano (C)">Cyano (C)</option> + <option value="Cys->Ala (C)">Cys->Ala (C)</option> + <option value="Cys->Arg (C)">Cys->Arg (C)</option> + <option value="Cys->Asn (C)">Cys->Asn (C)</option> + <option value="Cys->Asp (C)">Cys->Asp (C)</option> + <option value="Cys->Dha (C)">Cys->Dha (C)</option> + <option value="Cys->Gln (C)">Cys->Gln (C)</option> + <option value="Cys->Glu (C)">Cys->Glu (C)</option> + <option value="Cys->Gly (C)">Cys->Gly (C)</option> + <option value="Cys->His (C)">Cys->His (C)</option> + <option value="Cys->Lys (C)">Cys->Lys (C)</option> + <option value="Cys->Met (C)">Cys->Met (C)</option> + <option value="Cys->Oxoalanine (C)">Cys->Oxoalanine (C)</option> + <option value="Cys->Phe (C)">Cys->Phe (C)</option> + <option value="Cys->Pro (C)">Cys->Pro (C)</option> + <option value="Cys->Ser (C)">Cys->Ser (C)</option> + <option value="Cys->Thr (C)">Cys->Thr (C)</option> + <option value="Cys->Trp (C)">Cys->Trp (C)</option> + <option value="Cys->Tyr (C)">Cys->Tyr (C)</option> + <option value="Cys->Val (C)">Cys->Val (C)</option> + <option value="Cys->Xle (C)">Cys->Xle (C)</option> + <option value="Cys->ethylaminoAla (C)">Cys->ethylaminoAla (C)</option> + <option value="Cys->methylaminoAla (C)">Cys->methylaminoAla (C)</option> + <option value="Cysteinyl (C)">Cysteinyl (C)</option> + <option value="Cytopiloyne (C)">Cytopiloyne (C)</option> + <option value="Cytopiloyne (K)">Cytopiloyne (K)</option> + <option value="Cytopiloyne (N-term)">Cytopiloyne (N-term)</option> + <option value="Cytopiloyne (P)">Cytopiloyne (P)</option> + <option value="Cytopiloyne (R)">Cytopiloyne (R)</option> + <option value="Cytopiloyne (S)">Cytopiloyne (S)</option> + <option value="Cytopiloyne (Y)">Cytopiloyne (Y)</option> + <option value="Cytopiloyne+water (C)">Cytopiloyne+water (C)</option> + <option value="Cytopiloyne+water (K)">Cytopiloyne+water (K)</option> + <option value="Cytopiloyne+water (N-term)">Cytopiloyne+water (N-term)</option> + <option value="Cytopiloyne+water (R)">Cytopiloyne+water (R)</option> + <option value="Cytopiloyne+water (S)">Cytopiloyne+water (S)</option> + <option value="Cytopiloyne+water (T)">Cytopiloyne+water (T)</option> + <option value="Cytopiloyne+water (Y)">Cytopiloyne+water (Y)</option> + <option value="DAET (S)">DAET (S)</option> + <option value="DAET (T)">DAET (T)</option> + <option value="DEDGFLYMVYASQETFG (K)">DEDGFLYMVYASQETFG (K)</option> + <option value="DFDNB (K)">DFDNB (K)</option> + <option value="DFDNB (N)">DFDNB (N)</option> + <option value="DFDNB (Q)">DFDNB (Q)</option> + <option value="DFDNB (R)">DFDNB (R)</option> + <option value="DHP (C)">DHP (C)</option> + <option value="DMPO (C)">DMPO (C)</option> + <option value="DMPO (H)">DMPO (H)</option> + <option value="DMPO (Y)">DMPO (Y)</option> + <option value="DNCB_hapten (C)">DNCB_hapten (C)</option> + <option value="DNCB_hapten (H)">DNCB_hapten (H)</option> + <option value="DNCB_hapten (K)">DNCB_hapten (K)</option> + <option value="DNCB_hapten (Y)">DNCB_hapten (Y)</option> + <option value="DNPS (C)">DNPS (C)</option> + <option value="DNPS (W)">DNPS (W)</option> + <option value="DTBP (K)">DTBP (K)</option> + <option value="DTBP (N)">DTBP (N)</option> + <option value="DTBP (Q)">DTBP (Q)</option> + <option value="DTBP (R)">DTBP (R)</option> + <option value="DTT_C (C)">DTT_C (C)</option> + <option value="DTT_C:2H(6) (C)">DTT_C:2H(6) (C)</option> + <option value="DTT_ST (S)">DTT_ST (S)</option> + <option value="DTT_ST (T)">DTT_ST (T)</option> + <option value="DTT_ST:2H(6) (S)">DTT_ST:2H(6) (S)</option> + <option value="DTT_ST:2H(6) (T)">DTT_ST:2H(6) (T)</option> + <option value="Dansyl (K)">Dansyl (K)</option> + <option value="Dansyl (N-term)">Dansyl (N-term)</option> + <option value="Dap-DSP (A)">Dap-DSP (A)</option> + <option value="Dap-DSP (E)">Dap-DSP (E)</option> + <option value="Dap-DSP (K)">Dap-DSP (K)</option> + <option value="DeStreak (C)">DeStreak (C)</option> + <option value="Deamidated (N)">Deamidated (N)</option> + <option value="Deamidated (Q)">Deamidated (Q)</option> + <option value="Deamidated (R)">Deamidated (R)</option> + <option value="Deamidated:18O(1) (N)">Deamidated:18O(1) (N)</option> + <option value="Deamidated:18O(1) (Q)">Deamidated:18O(1) (Q)</option> + <option value="Decanoyl (S)">Decanoyl (S)</option> + <option value="Decanoyl (T)">Decanoyl (T)</option> + <option value="Dehydrated (D)">Dehydrated (D)</option> + <option value="Dehydrated (N-term C)">Dehydrated (N-term C)</option> + <option value="Dehydrated (S)">Dehydrated (S)</option> + <option value="Dehydrated (T)">Dehydrated (T)</option> + <option value="Dehydrated (Y)">Dehydrated (Y)</option> + <option value="Dehydro (C)">Dehydro (C)</option> + <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option> + <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> + <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> + <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> + <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> + <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> + <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> + <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> + <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> + <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> + <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> + <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> + <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> + <option value="Delta:H(4)C(3) (K)">Delta:H(4)C(3) (K)</option> + <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> + <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> + <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> + <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> + <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> + <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> + <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> + <option value="Delta:H(6)C(3)O(1) (K)">Delta:H(6)C(3)O(1) (K)</option> + <option value="Delta:H(6)C(6)O(1) (K)">Delta:H(6)C(6)O(1) (K)</option> + <option value="Delta:H(8)C(6)O(1) (L)">Delta:H(8)C(6)O(1) (L)</option> + <option value="Delta:H(8)C(6)O(2) (K)">Delta:H(8)C(6)O(2) (K)</option> + <option value="Delta:Hg(1) (C)">Delta:Hg(1) (C)</option> + <option value="Delta:S(-1)Se(1) (C)">Delta:S(-1)Se(1) (C)</option> + <option value="Delta:S(-1)Se(1) (M)">Delta:S(-1)Se(1) (M)</option> + <option value="Delta:Se(1) (C)">Delta:Se(1) (C)</option> + <option value="Deoxy (D)">Deoxy (D)</option> + <option value="Deoxy (S)">Deoxy (S)</option> + <option value="Deoxy (T)">Deoxy (T)</option> + <option value="Deoxyhypusine (K)">Deoxyhypusine (K)</option> + <option value="Dethiomethyl (M)">Dethiomethyl (M)</option> + <option value="DiART6plex (K)">DiART6plex (K)</option> + <option value="DiART6plex (N-term)">DiART6plex (N-term)</option> + <option value="DiART6plex (Y)">DiART6plex (Y)</option> + <option value="DiART6plex115 (K)">DiART6plex115 (K)</option> + <option value="DiART6plex115 (N-term)">DiART6plex115 (N-term)</option> + <option value="DiART6plex115 (Y)">DiART6plex115 (Y)</option> + <option value="DiART6plex116/119 (K)">DiART6plex116/119 (K)</option> + <option value="DiART6plex116/119 (N-term)">DiART6plex116/119 (N-term)</option> + <option value="DiART6plex116/119 (Y)">DiART6plex116/119 (Y)</option> + <option value="DiART6plex117 (K)">DiART6plex117 (K)</option> + <option value="DiART6plex117 (N-term)">DiART6plex117 (N-term)</option> + <option value="DiART6plex117 (Y)">DiART6plex117 (Y)</option> + <option value="DiART6plex118 (K)">DiART6plex118 (K)</option> + <option value="DiART6plex118 (N-term)">DiART6plex118 (N-term)</option> + <option value="DiART6plex118 (Y)">DiART6plex118 (Y)</option> + <option value="DiLeu4plex (K)">DiLeu4plex (K)</option> + <option value="DiLeu4plex (N-term)">DiLeu4plex (N-term)</option> + <option value="DiLeu4plex (Y)">DiLeu4plex (Y)</option> + <option value="DiLeu4plex115 (K)">DiLeu4plex115 (K)</option> + <option value="DiLeu4plex115 (N-term)">DiLeu4plex115 (N-term)</option> + <option value="DiLeu4plex115 (Y)">DiLeu4plex115 (Y)</option> + <option value="DiLeu4plex117 (K)">DiLeu4plex117 (K)</option> + <option value="DiLeu4plex117 (N-term)">DiLeu4plex117 (N-term)</option> + <option value="DiLeu4plex117 (Y)">DiLeu4plex117 (Y)</option> + <option value="DiLeu4plex118 (K)">DiLeu4plex118 (K)</option> + <option value="DiLeu4plex118 (N-term)">DiLeu4plex118 (N-term)</option> + <option value="DiLeu4plex118 (Y)">DiLeu4plex118 (Y)</option> + <option value="Diacylglycerol (C)">Diacylglycerol (C)</option> + <option value="Dibromo (Y)">Dibromo (Y)</option> + <option value="Dicarbamidomethyl (C)">Dicarbamidomethyl (C)</option> + <option value="Dicarbamidomethyl (H)">Dicarbamidomethyl (H)</option> + <option value="Dicarbamidomethyl (K)">Dicarbamidomethyl (K)</option> + <option value="Dicarbamidomethyl (N-term)">Dicarbamidomethyl (N-term)</option> + <option value="Dicarbamidomethyl (R)">Dicarbamidomethyl (R)</option> + <option value="Didehydro (C-term K)">Didehydro (C-term K)</option> + <option value="Didehydro (S)">Didehydro (S)</option> + <option value="Didehydro (T)">Didehydro (T)</option> + <option value="Didehydro (Y)">Didehydro (Y)</option> + <option value="Didehydroretinylidene (K)">Didehydroretinylidene (K)</option> + <option value="Diethyl (K)">Diethyl (K)</option> + <option value="Diethyl (N-term)">Diethyl (N-term)</option> + <option value="Diethylphosphate (C)">Diethylphosphate (C)</option> + <option value="Diethylphosphate (H)">Diethylphosphate (H)</option> + <option value="Diethylphosphate (K)">Diethylphosphate (K)</option> + <option value="Diethylphosphate (N-term)">Diethylphosphate (N-term)</option> + <option value="Diethylphosphate (S)">Diethylphosphate (S)</option> + <option value="Diethylphosphate (T)">Diethylphosphate (T)</option> + <option value="Diethylphosphate (Y)">Diethylphosphate (Y)</option> + <option value="Difuran (Y)">Difuran (Y)</option> + <option value="Dihydroxyimidazolidine (R)">Dihydroxyimidazolidine (R)</option> + <option value="Diiodo (H)">Diiodo (H)</option> + <option value="Diiodo (Y)">Diiodo (Y)</option> + <option value="Diironsubcluster (C)">Diironsubcluster (C)</option> + <option value="Diisopropylphosphate (K)">Diisopropylphosphate (K)</option> + <option value="Diisopropylphosphate (N-term)">Diisopropylphosphate (N-term)</option> + <option value="Diisopropylphosphate (S)">Diisopropylphosphate (S)</option> + <option value="Diisopropylphosphate (T)">Diisopropylphosphate (T)</option> + <option value="Diisopropylphosphate (Y)">Diisopropylphosphate (Y)</option> + <option value="Dimethyl (K)">Dimethyl (K)</option> + <option value="Dimethyl (N)">Dimethyl (N)</option> + <option value="Dimethyl (N-term)">Dimethyl (N-term)</option> + <option value="Dimethyl (R)">Dimethyl (R)</option> + <option value="Dimethyl:2H(4) (K)">Dimethyl:2H(4) (K)</option> + <option value="Dimethyl:2H(4) (N-term)">Dimethyl:2H(4) (N-term)</option> + <option value="Dimethyl:2H(4)13C(2) (K)">Dimethyl:2H(4)13C(2) (K)</option> + <option value="Dimethyl:2H(4)13C(2) (N-term)">Dimethyl:2H(4)13C(2) (N-term)</option> + <option value="Dimethyl:2H(6) (K)">Dimethyl:2H(6) (K)</option> + <option value="Dimethyl:2H(6) (N-term)">Dimethyl:2H(6) (N-term)</option> + <option value="Dimethyl:2H(6) (R)">Dimethyl:2H(6) (R)</option> + <option value="Dimethyl:2H(6)13C(2) (K)">Dimethyl:2H(6)13C(2) (K)</option> + <option value="Dimethyl:2H(6)13C(2) (N-term)">Dimethyl:2H(6)13C(2) (N-term)</option> + <option value="Dimethyl:2H(6)13C(2) (R)">Dimethyl:2H(6)13C(2) (R)</option> + <option value="DimethylArsino (C)">DimethylArsino (C)</option> + <option value="DimethylamineGMBS (C)">DimethylamineGMBS (C)</option> + <option value="DimethylpyrroleAdduct (K)">DimethylpyrroleAdduct (K)</option> + <option value="Dioxidation (C)">Dioxidation (C)</option> + <option value="Dioxidation (F)">Dioxidation (F)</option> + <option value="Dioxidation (K)">Dioxidation (K)</option> + <option value="Dioxidation (M)">Dioxidation (M)</option> + <option value="Dioxidation (P)">Dioxidation (P)</option> + <option value="Dioxidation (R)">Dioxidation (R)</option> + <option value="Dioxidation (W)">Dioxidation (W)</option> + <option value="Dioxidation (Y)">Dioxidation (Y)</option> + <option value="Diphthamide (H)">Diphthamide (H)</option> + <option value="Dipyridyl (C)">Dipyridyl (C)</option> + <option value="Dipyrrolylmethanemethyl (C)">Dipyrrolylmethanemethyl (C)</option> + <option value="DyLight-maleimide (C)">DyLight-maleimide (C)</option> + <option value="EDEDTIDVFQQQTGG (K)">EDEDTIDVFQQQTGG (K)</option> + <option value="EDT-iodoacetyl-PEO-biotin (S)">EDT-iodoacetyl-PEO-biotin (S)</option> + <option value="EDT-iodoacetyl-PEO-biotin (T)">EDT-iodoacetyl-PEO-biotin (T)</option> + <option value="EDT-maleimide-PEO-biotin (S)">EDT-maleimide-PEO-biotin (S)</option> + <option value="EDT-maleimide-PEO-biotin (T)">EDT-maleimide-PEO-biotin (T)</option> + <option value="EEEDVIEVYQEQTGG (K)">EEEDVIEVYQEQTGG (K)</option> + <option value="EGCG1 (C)">EGCG1 (C)</option> + <option value="EGCG2 (C)">EGCG2 (C)</option> + <option value="EHD-diphenylpentanone (C)">EHD-diphenylpentanone (C)</option> + <option value="EHD-diphenylpentanone (M)">EHD-diphenylpentanone (M)</option> + <option value="EQAT (C)">EQAT (C)</option> + <option value="EQAT:2H(5) (C)">EQAT:2H(5) (C)</option> + <option value="EQIGG (K)">EQIGG (K)</option> + <option value="ESP (K)">ESP (K)</option> + <option value="ESP (N-term)">ESP (N-term)</option> + <option value="ESP:2H(10) (K)">ESP:2H(10) (K)</option> + <option value="ESP:2H(10) (N-term)">ESP:2H(10) (N-term)</option> + <option value="Ethanedithiol (S)">Ethanedithiol (S)</option> + <option value="Ethanedithiol (T)">Ethanedithiol (T)</option> + <option value="Ethanolamine (C)">Ethanolamine (C)</option> + <option value="Ethanolamine (C-term)">Ethanolamine (C-term)</option> + <option value="Ethanolamine (D)">Ethanolamine (D)</option> + <option value="Ethanolamine (E)">Ethanolamine (E)</option> + <option value="Ethanolyl (C)">Ethanolyl (C)</option> + <option value="Ethanolyl (K)">Ethanolyl (K)</option> + <option value="Ethanolyl (R)">Ethanolyl (R)</option> + <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option> + <option value="Ethyl (C-term)">Ethyl (C-term)</option> + <option value="Ethyl (D)">Ethyl (D)</option> + <option value="Ethyl (E)">Ethyl (E)</option> + <option value="Ethyl (K)">Ethyl (K)</option> + <option value="Ethyl (N-term)">Ethyl (N-term)</option> + <option value="Ethyl+Deamidated (N)">Ethyl+Deamidated (N)</option> + <option value="Ethyl+Deamidated (Q)">Ethyl+Deamidated (Q)</option> + <option value="Ethylphosphate (K)">Ethylphosphate (K)</option> + <option value="Ethylphosphate (N-term)">Ethylphosphate (N-term)</option> + <option value="Ethylphosphate (S)">Ethylphosphate (S)</option> + <option value="Ethylphosphate (T)">Ethylphosphate (T)</option> + <option value="Ethylphosphate (Y)">Ethylphosphate (Y)</option> + <option value="ExacTagAmine (K)">ExacTagAmine (K)</option> + <option value="ExacTagThiol (C)">ExacTagThiol (C)</option> + <option value="FAD (C)">FAD (C)</option> + <option value="FAD (H)">FAD (H)</option> + <option value="FAD (Y)">FAD (Y)</option> + <option value="FMN (S)">FMN (S)</option> + <option value="FMN (T)">FMN (T)</option> + <option value="FMNC (C)">FMNC (C)</option> + <option value="FMNH (C)">FMNH (C)</option> + <option value="FMNH (H)">FMNH (H)</option> + <option value="FNEM (C)">FNEM (C)</option> + <option value="FP-Biotin (K)">FP-Biotin (K)</option> + <option value="FP-Biotin (S)">FP-Biotin (S)</option> + <option value="FP-Biotin (T)">FP-Biotin (T)</option> + <option value="FP-Biotin (Y)">FP-Biotin (Y)</option> + <option value="FTC (C)">FTC (C)</option> + <option value="FTC (K)">FTC (K)</option> + <option value="FTC (P)">FTC (P)</option> + <option value="FTC (R)">FTC (R)</option> + <option value="FTC (S)">FTC (S)</option> + <option value="Farnesyl (C)">Farnesyl (C)</option> + <option value="Fluorescein (C)">Fluorescein (C)</option> + <option value="Fluoro (A)">Fluoro (A)</option> + <option value="Fluoro (F)">Fluoro (F)</option> + <option value="Fluoro (W)">Fluoro (W)</option> + <option value="Fluoro (Y)">Fluoro (Y)</option> + <option value="Formyl (K)">Formyl (K)</option> + <option value="Formyl (N-term)">Formyl (N-term)</option> + <option value="Formyl (S)">Formyl (S)</option> + <option value="Formyl (T)">Formyl (T)</option> + <option value="Furan (Y)">Furan (Y)</option> + <option value="G-H1 (R)">G-H1 (R)</option> + <option value="GG (C)">GG (C)</option> + <option value="GG (K)">GG (K)</option> + <option value="GG (S)">GG (S)</option> + <option value="GG (T)">GG (T)</option> + <option value="GGQ (K)">GGQ (K)</option> + <option value="GIST-Quat (K)">GIST-Quat (K)</option> + <option value="GIST-Quat (N-term)">GIST-Quat (N-term)</option> + <option value="GIST-Quat:2H(3) (K)">GIST-Quat:2H(3) (K)</option> + <option value="GIST-Quat:2H(3) (N-term)">GIST-Quat:2H(3) (N-term)</option> + <option value="GIST-Quat:2H(6) (K)">GIST-Quat:2H(6) (K)</option> + <option value="GIST-Quat:2H(6) (N-term)">GIST-Quat:2H(6) (N-term)</option> + <option value="GIST-Quat:2H(9) (K)">GIST-Quat:2H(9) (K)</option> + <option value="GIST-Quat:2H(9) (N-term)">GIST-Quat:2H(9) (N-term)</option> + <option value="Galactosyl (K)">Galactosyl (K)</option> + <option value="GeranylGeranyl (C)">GeranylGeranyl (C)</option> + <option value="Gln->Ala (Q)">Gln->Ala (Q)</option> + <option value="Gln->Arg (Q)">Gln->Arg (Q)</option> + <option value="Gln->Asn (Q)">Gln->Asn (Q)</option> + <option value="Gln->Asp (Q)">Gln->Asp (Q)</option> + <option value="Gln->Cys (Q)">Gln->Cys (Q)</option> + <option value="Gln->Glu (Q)">Gln->Glu (Q)</option> + <option value="Gln->Gly (Q)">Gln->Gly (Q)</option> + <option value="Gln->His (Q)">Gln->His (Q)</option> + <option value="Gln->Lys (Q)">Gln->Lys (Q)</option> + <option value="Gln->Met (Q)">Gln->Met (Q)</option> + <option value="Gln->Phe (Q)">Gln->Phe (Q)</option> + <option value="Gln->Pro (Q)">Gln->Pro (Q)</option> + <option value="Gln->Ser (Q)">Gln->Ser (Q)</option> + <option value="Gln->Thr (Q)">Gln->Thr (Q)</option> + <option value="Gln->Trp (Q)">Gln->Trp (Q)</option> + <option value="Gln->Tyr (Q)">Gln->Tyr (Q)</option> + <option value="Gln->Val (Q)">Gln->Val (Q)</option> + <option value="Gln->Xle (Q)">Gln->Xle (Q)</option> + <option value="Gln->pyro-Glu (N-term Q)">Gln->pyro-Glu (N-term Q)</option> + <option value="Glu (E)">Glu (E)</option> + <option value="Glu->Ala (E)">Glu->Ala (E)</option> + <option value="Glu->Arg (E)">Glu->Arg (E)</option> + <option value="Glu->Asn (E)">Glu->Asn (E)</option> + <option value="Glu->Asp (E)">Glu->Asp (E)</option> + <option value="Glu->Cys (E)">Glu->Cys (E)</option> + <option value="Glu->Gln (E)">Glu->Gln (E)</option> + <option value="Glu->Gly (E)">Glu->Gly (E)</option> + <option value="Glu->His (E)">Glu->His (E)</option> + <option value="Glu->Lys (E)">Glu->Lys (E)</option> + <option value="Glu->Met (E)">Glu->Met (E)</option> + <option value="Glu->Phe (E)">Glu->Phe (E)</option> + <option value="Glu->Pro (E)">Glu->Pro (E)</option> + <option value="Glu->Ser (E)">Glu->Ser (E)</option> + <option value="Glu->Thr (E)">Glu->Thr (E)</option> + <option value="Glu->Trp (E)">Glu->Trp (E)</option> + <option value="Glu->Tyr (E)">Glu->Tyr (E)</option> + <option value="Glu->Val (E)">Glu->Val (E)</option> + <option value="Glu->Xle (E)">Glu->Xle (E)</option> + <option value="Glu->pyro-Glu (N-term E)">Glu->pyro-Glu (N-term E)</option> + <option value="GluGlu (E)">GluGlu (E)</option> + <option value="GluGluGlu (E)">GluGluGlu (E)</option> + <option value="GluGluGluGlu (E)">GluGluGluGlu (E)</option> + <option value="Gluconoylation (K)">Gluconoylation (K)</option> + <option value="Gluconoylation (N-term)">Gluconoylation (N-term)</option> + <option value="Glucosylgalactosyl (K)">Glucosylgalactosyl (K)</option> + <option value="Glucuronyl (S)">Glucuronyl (S)</option> + <option value="Glutathione (C)">Glutathione (C)</option> + <option value="Gly (K)">Gly (K)</option> + <option value="Gly (S)">Gly (S)</option> + <option value="Gly (T)">Gly (T)</option> + <option value="Gly->Ala (G)">Gly->Ala (G)</option> + <option value="Gly->Arg (G)">Gly->Arg (G)</option> + <option value="Gly->Asn (G)">Gly->Asn (G)</option> + <option value="Gly->Asp (G)">Gly->Asp (G)</option> + <option value="Gly->Cys (G)">Gly->Cys (G)</option> + <option value="Gly->Gln (G)">Gly->Gln (G)</option> + <option value="Gly->Glu (G)">Gly->Glu (G)</option> + <option value="Gly->His (G)">Gly->His (G)</option> + <option value="Gly->Lys (G)">Gly->Lys (G)</option> + <option value="Gly->Met (G)">Gly->Met (G)</option> + <option value="Gly->Phe (G)">Gly->Phe (G)</option> + <option value="Gly->Pro (G)">Gly->Pro (G)</option> + <option value="Gly->Ser (G)">Gly->Ser (G)</option> + <option value="Gly->Thr (G)">Gly->Thr (G)</option> + <option value="Gly->Trp (G)">Gly->Trp (G)</option> + <option value="Gly->Tyr (G)">Gly->Tyr (G)</option> + <option value="Gly->Val (G)">Gly->Val (G)</option> + <option value="Gly->Xle (G)">Gly->Xle (G)</option> + <option value="Gly-loss+Amide (C-term G)">Gly-loss+Amide (C-term G)</option> + <option value="Glycerophospho (S)">Glycerophospho (S)</option> + <option value="GlycerylPE (E)">GlycerylPE (E)</option> + <option value="Glycosyl (P)">Glycosyl (P)</option> + <option value="Guanidinyl (K)">Guanidinyl (K)</option> + <option value="Guanidinyl (N-term)">Guanidinyl (N-term)</option> + <option value="HCysThiolactone (K)">HCysThiolactone (K)</option> + <option value="HCysteinyl (C)">HCysteinyl (C)</option> + <option value="HMVK (C)">HMVK (C)</option> + <option value="HN2_mustard (C)">HN2_mustard (C)</option> + <option value="HN2_mustard (H)">HN2_mustard (H)</option> + <option value="HN2_mustard (K)">HN2_mustard (K)</option> + <option value="HN3_mustard (C)">HN3_mustard (C)</option> + <option value="HN3_mustard (H)">HN3_mustard (H)</option> + <option value="HN3_mustard (K)">HN3_mustard (K)</option> + <option value="HNE (A)">HNE (A)</option> + <option value="HNE (C)">HNE (C)</option> + <option value="HNE (H)">HNE (H)</option> + <option value="HNE (K)">HNE (K)</option> + <option value="HNE (L)">HNE (L)</option> + <option value="HNE+Delta:H(2) (C)">HNE+Delta:H(2) (C)</option> + <option value="HNE+Delta:H(2) (H)">HNE+Delta:H(2) (H)</option> + <option value="HNE+Delta:H(2) (K)">HNE+Delta:H(2) (K)</option> + <option value="HNE-BAHAH (C)">HNE-BAHAH (C)</option> + <option value="HNE-BAHAH (H)">HNE-BAHAH (H)</option> + <option value="HNE-BAHAH (K)">HNE-BAHAH (K)</option> + <option value="HNE-Delta:H(2)O (C)">HNE-Delta:H(2)O (C)</option> + <option value="HNE-Delta:H(2)O (H)">HNE-Delta:H(2)O (H)</option> + <option value="HNE-Delta:H(2)O (K)">HNE-Delta:H(2)O (K)</option> + <option value="HPG (R)">HPG (R)</option> + <option value="Heme (C)">Heme (C)</option> + <option value="Heme (H)">Heme (H)</option> + <option value="Hep (K)">Hep (K)</option> + <option value="Hep (N)">Hep (N)</option> + <option value="Hep (Q)">Hep (Q)</option> + <option value="Hep (R)">Hep (R)</option> + <option value="Hep (S)">Hep (S)</option> + <option value="Hep (T)">Hep (T)</option> + <option value="Hex (C)">Hex (C)</option> + <option value="Hex (K)">Hex (K)</option> + <option value="Hex (N)">Hex (N)</option> + <option value="Hex (N-term)">Hex (N-term)</option> + <option value="Hex (R)">Hex (R)</option> + <option value="Hex (S)">Hex (S)</option> + <option value="Hex (T)">Hex (T)</option> + <option value="Hex (W)">Hex (W)</option> + <option value="Hex (Y)">Hex (Y)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1) (N)">Hex(1)HexNAc(1)NeuAc(1) (N)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1) (S)">Hex(1)HexNAc(1)NeuAc(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1) (T)">Hex(1)HexNAc(1)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2) (N)">Hex(1)HexNAc(1)NeuAc(2) (N)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2) (S)">Hex(1)HexNAc(1)NeuAc(2) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2) (T)">Hex(1)HexNAc(1)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(1)dHex(1) (N)">Hex(1)HexNAc(1)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(2) (N)">Hex(1)HexNAc(2) (N)</option> + <option value="Hex(1)HexNAc(2)Pent(1) (N)">Hex(1)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(1) (N)">Hex(1)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(1)Pent(1) (N)">Hex(1)HexNAc(2)dHex(1)Pent(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(2) (N)">Hex(1)HexNAc(2)dHex(2) (N)</option> + <option value="Hex(2) (K)">Hex(2) (K)</option> + <option value="Hex(2) (R)">Hex(2) (R)</option> + <option value="Hex(2)HexNAc(2) (N)">Hex(2)HexNAc(2) (N)</option> + <option value="Hex(2)HexNAc(2)Pent(1) (N)">Hex(2)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(2)HexNAc(2)dHex(1) (N)">Hex(2)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(3) (N)">Hex(3) (N)</option> + <option value="Hex(3)HexNAc(1)Pent(1) (N)">Hex(3)HexNAc(1)Pent(1) (N)</option> + <option value="Hex(3)HexNAc(2) (N)">Hex(3)HexNAc(2) (N)</option> + <option value="Hex(3)HexNAc(2)P(1) (N)">Hex(3)HexNAc(2)P(1) (N)</option> + <option value="Hex(3)HexNAc(4) (N)">Hex(3)HexNAc(4) (N)</option> + <option value="Hex(4)HexNAc(4) (N)">Hex(4)HexNAc(4) (N)</option> + <option value="Hex(5)HexNAc(2) (N)">Hex(5)HexNAc(2) (N)</option> + <option value="Hex(5)HexNAc(4) (N)">Hex(5)HexNAc(4) (N)</option> + <option value="Hex(5)HexNAc(4)NeuAc(1) (N)">Hex(5)HexNAc(4)NeuAc(1) (N)</option> + <option value="Hex(5)HexNAc(4)NeuAc(2) (N)">Hex(5)HexNAc(4)NeuAc(2) (N)</option> + <option value="Hex1HexNAc1 (N)">Hex1HexNAc1 (N)</option> + <option value="Hex1HexNAc1 (S)">Hex1HexNAc1 (S)</option> + <option value="Hex1HexNAc1 (T)">Hex1HexNAc1 (T)</option> + <option value="HexN (K)">HexN (K)</option> + <option value="HexN (N)">HexN (N)</option> + <option value="HexN (T)">HexN (T)</option> + <option value="HexN (W)">HexN (W)</option> + <option value="HexNAc (N)">HexNAc (N)</option> + <option value="HexNAc (S)">HexNAc (S)</option> + <option value="HexNAc (T)">HexNAc (T)</option> + <option value="HexNAc(1)dHex(1) (N)">HexNAc(1)dHex(1) (N)</option> + <option value="HexNAc(1)dHex(2) (N)">HexNAc(1)dHex(2) (N)</option> + <option value="HexNAc(2) (N)">HexNAc(2) (N)</option> + <option value="HexNAc(2)dHex(1) (N)">HexNAc(2)dHex(1) (N)</option> + <option value="HexNAc(2)dHex(2) (N)">HexNAc(2)dHex(2) (N)</option> + <option value="His->Ala (H)">His->Ala (H)</option> + <option value="His->Arg (H)">His->Arg (H)</option> + <option value="His->Asn (H)">His->Asn (H)</option> + <option value="His->Asp (H)">His->Asp (H)</option> + <option value="His->Cys (H)">His->Cys (H)</option> + <option value="His->Gln (H)">His->Gln (H)</option> + <option value="His->Glu (H)">His->Glu (H)</option> + <option value="His->Gly (H)">His->Gly (H)</option> + <option value="His->Lys (H)">His->Lys (H)</option> + <option value="His->Met (H)">His->Met (H)</option> + <option value="His->Phe (H)">His->Phe (H)</option> + <option value="His->Pro (H)">His->Pro (H)</option> + <option value="His->Ser (H)">His->Ser (H)</option> + <option value="His->Thr (H)">His->Thr (H)</option> + <option value="His->Trp (H)">His->Trp (H)</option> + <option value="His->Tyr (H)">His->Tyr (H)</option> + <option value="His->Val (H)">His->Val (H)</option> + <option value="His->Xle (H)">His->Xle (H)</option> + <option value="Homocysteic_acid (M)">Homocysteic_acid (M)</option> + <option value="Hydroxamic_acid (D)">Hydroxamic_acid (D)</option> + <option value="Hydroxamic_acid (E)">Hydroxamic_acid (E)</option> + <option value="Hydroxycinnamyl (C)">Hydroxycinnamyl (C)</option> + <option value="Hydroxyfarnesyl (C)">Hydroxyfarnesyl (C)</option> + <option value="Hydroxyheme (E)">Hydroxyheme (E)</option> + <option value="Hydroxymethyl (N)">Hydroxymethyl (N)</option> + <option value="HydroxymethylOP (K)">HydroxymethylOP (K)</option> + <option value="Hydroxytrimethyl (K)">Hydroxytrimethyl (K)</option> + <option value="Hypusine (K)">Hypusine (K)</option> + <option value="IBTP (C)">IBTP (C)</option> + <option value="ICAT-C (C)">ICAT-C (C)</option> + <option value="ICAT-C:13C(9) (C)">ICAT-C:13C(9) (C)</option> + <option value="ICAT-D (C)">ICAT-D (C)</option> + <option value="ICAT-D:2H(8) (C)">ICAT-D:2H(8) (C)</option> + <option value="ICAT-G (C)">ICAT-G (C)</option> + <option value="ICAT-G:2H(8) (C)">ICAT-G:2H(8) (C)</option> + <option value="ICAT-H (C)">ICAT-H (C)</option> + <option value="ICAT-H:13C(6) (C)">ICAT-H:13C(6) (C)</option> + <option value="ICDID (C)">ICDID (C)</option> + <option value="ICDID:2H(6) (C)">ICDID:2H(6) (C)</option> + <option value="ICPL (K)">ICPL (K)</option> + <option value="ICPL (N-term)">ICPL (N-term)</option> + <option value="ICPL:13C(6) (K)">ICPL:13C(6) (K)</option> + <option value="ICPL:13C(6) (N-term)">ICPL:13C(6) (N-term)</option> + <option value="ICPL:13C(6)2H(4) (K)">ICPL:13C(6)2H(4) (K)</option> + <option value="ICPL:13C(6)2H(4) (N-term)">ICPL:13C(6)2H(4) (N-term)</option> + <option value="ICPL:2H(4) (K)">ICPL:2H(4) (K)</option> + <option value="ICPL:2H(4) (N-term)">ICPL:2H(4) (N-term)</option> + <option value="IDEnT (C)">IDEnT (C)</option> + <option value="IED-Biotin (C)">IED-Biotin (C)</option> + <option value="IGBP (C)">IGBP (C)</option> + <option value="IGBP:13C(2) (C)">IGBP:13C(2) (C)</option> + <option value="IMEHex(2)NeuAc(1) (K)">IMEHex(2)NeuAc(1) (K)</option> + <option value="IMID (K)">IMID (K)</option> + <option value="IMID:2H(4) (K)">IMID:2H(4) (K)</option> + <option value="ISD_z+2_ion (N-term)">ISD_z+2_ion (N-term)</option> + <option value="Iminobiotin (K)">Iminobiotin (K)</option> + <option value="Iminobiotin (N-term)">Iminobiotin (N-term)</option> + <option value="Iodo (H)">Iodo (H)</option> + <option value="Iodo (Y)">Iodo (Y)</option> + <option value="IodoU-AMP (F)">IodoU-AMP (F)</option> + <option value="IodoU-AMP (W)">IodoU-AMP (W)</option> + <option value="IodoU-AMP (Y)">IodoU-AMP (Y)</option> + <option value="Iodoacetanilide (C)">Iodoacetanilide (C)</option> + <option value="Iodoacetanilide (K)">Iodoacetanilide (K)</option> + <option value="Iodoacetanilide (N-term)">Iodoacetanilide (N-term)</option> + <option value="Iodoacetanilide:13C(6) (C)">Iodoacetanilide:13C(6) (C)</option> + <option value="Iodoacetanilide:13C(6) (K)">Iodoacetanilide:13C(6) (K)</option> + <option value="Iodoacetanilide:13C(6) (N-term)">Iodoacetanilide:13C(6) (N-term)</option> + <option value="Isopropylphospho (S)">Isopropylphospho (S)</option> + <option value="Isopropylphospho (T)">Isopropylphospho (T)</option> + <option value="Isopropylphospho (Y)">Isopropylphospho (Y)</option> + <option value="LG-Hlactam-K (K)">LG-Hlactam-K (K)</option> + <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> + <option value="LG-anhydrolactam (K)">LG-anhydrolactam (K)</option> + <option value="LG-anhydrolactam (N-term)">LG-anhydrolactam (N-term)</option> + <option value="LG-anhyropyrrole (K)">LG-anhyropyrrole (K)</option> + <option value="LG-anhyropyrrole (N-term)">LG-anhyropyrrole (N-term)</option> + <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> + <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> + <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> + <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> + <option value="LRGG (K)">LRGG (K)</option> + <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> + <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> + <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> + <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> + <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> + <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> + <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> + <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> + <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> + <option value="Label:13C(5)15N(1) (E)">Label:13C(5)15N(1) (E)</option> + <option value="Label:13C(5)15N(1) (M)">Label:13C(5)15N(1) (M)</option> + <option value="Label:13C(5)15N(1) (P)">Label:13C(5)15N(1) (P)</option> + <option value="Label:13C(5)15N(1) (V)">Label:13C(5)15N(1) (V)</option> + <option value="Label:13C(6) (I)">Label:13C(6) (I)</option> + <option value="Label:13C(6) (K)">Label:13C(6) (K)</option> + <option value="Label:13C(6) (L)">Label:13C(6) (L)</option> + <option value="Label:13C(6) (R)">Label:13C(6) (R)</option> + <option value="Label:13C(6)+Acetyl (K)">Label:13C(6)+Acetyl (K)</option> + <option value="Label:13C(6)+Dimethyl (K)">Label:13C(6)+Dimethyl (K)</option> + <option value="Label:13C(6)+GG (K)">Label:13C(6)+GG (K)</option> + <option value="Label:13C(6)15N(1) (I)">Label:13C(6)15N(1) (I)</option> + <option value="Label:13C(6)15N(1) (L)">Label:13C(6)15N(1) (L)</option> + <option value="Label:13C(6)15N(2) (K)">Label:13C(6)15N(2) (K)</option> + <option value="Label:13C(6)15N(2)+Acetyl (K)">Label:13C(6)15N(2)+Acetyl (K)</option> + <option value="Label:13C(6)15N(2)+Dimethyl (K)">Label:13C(6)15N(2)+Dimethyl (K)</option> + <option value="Label:13C(6)15N(2)+GG (K)">Label:13C(6)15N(2)+GG (K)</option> + <option value="Label:13C(6)15N(4) (R)">Label:13C(6)15N(4) (R)</option> + <option value="Label:13C(6)15N(4)+Dimethyl (R)">Label:13C(6)15N(4)+Dimethyl (R)</option> + <option value="Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)">Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)</option> + <option value="Label:13C(6)15N(4)+Methyl (R)">Label:13C(6)15N(4)+Methyl (R)</option> + <option value="Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)">Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)</option> + <option value="Label:13C(8)15N(2) (R)">Label:13C(8)15N(2) (R)</option> + <option value="Label:13C(9) (F)">Label:13C(9) (F)</option> + <option value="Label:13C(9) (Y)">Label:13C(9) (Y)</option> + <option value="Label:13C(9)+Phospho (Y)">Label:13C(9)+Phospho (Y)</option> + <option value="Label:13C(9)15N(1) (F)">Label:13C(9)15N(1) (F)</option> + <option value="Label:15N(1) (A)">Label:15N(1) (A)</option> + <option value="Label:15N(1) (C)">Label:15N(1) (C)</option> + <option value="Label:15N(1) (D)">Label:15N(1) (D)</option> + <option value="Label:15N(1) (E)">Label:15N(1) (E)</option> + <option value="Label:15N(1) (F)">Label:15N(1) (F)</option> + <option value="Label:15N(1) (G)">Label:15N(1) (G)</option> + <option value="Label:15N(1) (I)">Label:15N(1) (I)</option> + <option value="Label:15N(1) (L)">Label:15N(1) (L)</option> + <option value="Label:15N(1) (M)">Label:15N(1) (M)</option> + <option value="Label:15N(1) (P)">Label:15N(1) (P)</option> + <option value="Label:15N(1) (S)">Label:15N(1) (S)</option> + <option value="Label:15N(1) (T)">Label:15N(1) (T)</option> + <option value="Label:15N(1) (V)">Label:15N(1) (V)</option> + <option value="Label:15N(1) (Y)">Label:15N(1) (Y)</option> + <option value="Label:15N(2) (K)">Label:15N(2) (K)</option> + <option value="Label:15N(2) (N)">Label:15N(2) (N)</option> + <option value="Label:15N(2) (Q)">Label:15N(2) (Q)</option> + <option value="Label:15N(2) (W)">Label:15N(2) (W)</option> + <option value="Label:15N(2)2H(9) (K)">Label:15N(2)2H(9) (K)</option> + <option value="Label:15N(3) (H)">Label:15N(3) (H)</option> + <option value="Label:15N(4) (R)">Label:15N(4) (R)</option> + <option value="Label:18O(1) (C-term)">Label:18O(1) (C-term)</option> + <option value="Label:18O(1) (S)">Label:18O(1) (S)</option> + <option value="Label:18O(1) (T)">Label:18O(1) (T)</option> + <option value="Label:18O(1) (Y)">Label:18O(1) (Y)</option> + <option value="Label:18O(2) (C-term)">Label:18O(2) (C-term)</option> + <option value="Label:2H(10) (L)">Label:2H(10) (L)</option> + <option value="Label:2H(3) (L)">Label:2H(3) (L)</option> + <option value="Label:2H(3) (M)">Label:2H(3) (M)</option> + <option value="Label:2H(3)+Oxidation (M)">Label:2H(3)+Oxidation (M)</option> + <option value="Label:2H(4) (F)">Label:2H(4) (F)</option> + <option value="Label:2H(4) (K)">Label:2H(4) (K)</option> + <option value="Label:2H(4) (Y)">Label:2H(4) (Y)</option> + <option value="Label:2H(4)+Acetyl (K)">Label:2H(4)+Acetyl (K)</option> + <option value="Label:2H(4)+GG (K)">Label:2H(4)+GG (K)</option> + <option value="Label:2H(4)13C(1) (R)">Label:2H(4)13C(1) (R)</option> + <option value="Label:2H(6)15N(1) (P)">Label:2H(6)15N(1) (P)</option> + <option value="Label:2H(7)15N(4) (R)">Label:2H(7)15N(4) (R)</option> + <option value="Label:2H(9)13C(6)15N(2) (K)">Label:2H(9)13C(6)15N(2) (K)</option> + <option value="Leu->MetOx (L)">Leu->MetOx (L)</option> + <option value="Lipoyl (K)">Lipoyl (K)</option> + <option value="Lys (N-term)">Lys (N-term)</option> + <option value="Lys->Ala (K)">Lys->Ala (K)</option> + <option value="Lys->Allysine (K)">Lys->Allysine (K)</option> + <option value="Lys->AminoadipicAcid (K)">Lys->AminoadipicAcid (K)</option> + <option value="Lys->Arg (K)">Lys->Arg (K)</option> + <option value="Lys->Asn (K)">Lys->Asn (K)</option> + <option value="Lys->Asp (K)">Lys->Asp (K)</option> + <option value="Lys->CamCys (K)">Lys->CamCys (K)</option> + <option value="Lys->Cys (K)">Lys->Cys (K)</option> + <option value="Lys->Gln (K)">Lys->Gln (K)</option> + <option value="Lys->Glu (K)">Lys->Glu (K)</option> + <option value="Lys->Gly (K)">Lys->Gly (K)</option> + <option value="Lys->His (K)">Lys->His (K)</option> + <option value="Lys->Met (K)">Lys->Met (K)</option> + <option value="Lys->MetOx (K)">Lys->MetOx (K)</option> + <option value="Lys->Phe (K)">Lys->Phe (K)</option> + <option value="Lys->Pro (K)">Lys->Pro (K)</option> + <option value="Lys->Ser (K)">Lys->Ser (K)</option> + <option value="Lys->Thr (K)">Lys->Thr (K)</option> + <option value="Lys->Trp (K)">Lys->Trp (K)</option> + <option value="Lys->Tyr (K)">Lys->Tyr (K)</option> + <option value="Lys->Val (K)">Lys->Val (K)</option> + <option value="Lys->Xle (K)">Lys->Xle (K)</option> + <option value="Lysbiotinhydrazide (K)">Lysbiotinhydrazide (K)</option> + <option value="MDCC (C)">MDCC (C)</option> + <option value="MG-H1 (R)">MG-H1 (R)</option> + <option value="MM-diphenylpentanone (C)">MM-diphenylpentanone (C)</option> + <option value="MTSL (C)">MTSL (C)</option> + <option value="Maleimide-PEO2-Biotin (C)">Maleimide-PEO2-Biotin (C)</option> + <option value="Malonyl (C)">Malonyl (C)</option> + <option value="Malonyl (S)">Malonyl (S)</option> + <option value="Menadione (C)">Menadione (C)</option> + <option 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(C-term M)</option> + <option value="Met->Lys (M)">Met->Lys (M)</option> + <option value="Met->Phe (M)">Met->Phe (M)</option> + <option value="Met->Pro (M)">Met->Pro (M)</option> + <option value="Met->Ser (M)">Met->Ser (M)</option> + <option value="Met->Thr (M)">Met->Thr (M)</option> + <option value="Met->Trp (M)">Met->Trp (M)</option> + <option value="Met->Tyr (M)">Met->Tyr (M)</option> + <option value="Met->Val (M)">Met->Val (M)</option> + <option value="Met->Xle (M)">Met->Xle (M)</option> + <option value="Methyl (C)">Methyl (C)</option> + <option value="Methyl (C-term)">Methyl (C-term)</option> + <option value="Methyl (D)">Methyl (D)</option> + <option value="Methyl (E)">Methyl (E)</option> + <option value="Methyl (H)">Methyl (H)</option> + <option value="Methyl (I)">Methyl (I)</option> + <option value="Methyl (K)">Methyl (K)</option> + <option value="Methyl (L)">Methyl (L)</option> + <option value="Methyl (N)">Methyl (N)</option> + <option value="Methyl (N-term)">Methyl 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(Y)</option> + <option value="NEIAA:2H(5) (C)">NEIAA:2H(5) (C)</option> + <option value="NEIAA:2H(5) (Y)">NEIAA:2H(5) (Y)</option> + <option value="NEM:2H(5) (C)">NEM:2H(5) (C)</option> + <option value="NEM:2H(5)+H2O (C)">NEM:2H(5)+H2O (C)</option> + <option value="NEMsulfur (C)">NEMsulfur (C)</option> + <option value="NEMsulfurWater (C)">NEMsulfurWater (C)</option> + <option value="NHS-LC-Biotin (K)">NHS-LC-Biotin (K)</option> + <option value="NHS-LC-Biotin (N-term)">NHS-LC-Biotin (N-term)</option> + <option value="NHS-fluorescein (K)">NHS-fluorescein (K)</option> + <option value="NIC (K)">NIC (K)</option> + <option value="NIC (N-term)">NIC (N-term)</option> + <option value="NIPCAM (C)">NIPCAM (C)</option> + <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> + <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> + <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option> + <option value="Nethylmaleimide (C)">Nethylmaleimide (C)</option> + <option value="Nethylmaleimide+water 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(Y)">O-pinacolylmethylphosphonate (Y)</option> + <option value="Octanoyl (C)">Octanoyl (C)</option> + <option value="Octanoyl (S)">Octanoyl (S)</option> + <option value="Octanoyl (T)">Octanoyl (T)</option> + <option value="OxArgBiotin (R)">OxArgBiotin (R)</option> + <option value="OxArgBiotinRed (R)">OxArgBiotinRed (R)</option> + <option value="OxLysBiotin (K)">OxLysBiotin (K)</option> + <option value="OxLysBiotinRed (K)">OxLysBiotinRed (K)</option> + <option value="OxProBiotin (P)">OxProBiotin (P)</option> + <option value="OxProBiotinRed (P)">OxProBiotinRed (P)</option> + <option value="Oxidation (C)">Oxidation (C)</option> + <option value="Oxidation (C-term G)">Oxidation (C-term G)</option> + <option value="Oxidation (D)">Oxidation (D)</option> + <option value="Oxidation (F)">Oxidation (F)</option> + <option value="Oxidation (H)">Oxidation (H)</option> + <option value="Oxidation (K)">Oxidation (K)</option> + <option value="Oxidation (M)">Oxidation (M)</option> + <option 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(F)">Phe->Ser (F)</option> + <option value="Phe->Thr (F)">Phe->Thr (F)</option> + <option value="Phe->Trp (F)">Phe->Trp (F)</option> + <option value="Phe->Tyr (F)">Phe->Tyr (F)</option> + <option value="Phe->Val (F)">Phe->Val (F)</option> + <option value="Phe->Xle (F)">Phe->Xle (F)</option> + <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> + <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> + <option value="Phospho (C)">Phospho (C)</option> + <option value="Phospho (D)">Phospho (D)</option> + <option value="Phospho (H)">Phospho (H)</option> + <option value="Phospho (K)">Phospho (K)</option> + <option value="Phospho (R)">Phospho (R)</option> + <option value="Phospho (S)">Phospho (S)</option> + <option value="Phospho (T)">Phospho (T)</option> + <option value="Phospho (Y)">Phospho (Y)</option> + <option value="PhosphoHex (S)">PhosphoHex (S)</option> + <option value="PhosphoHexNAc (S)">PhosphoHexNAc (S)</option> + <option 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(P)</option> + <option value="Pro->Met (P)">Pro->Met (P)</option> + <option value="Pro->Phe (P)">Pro->Phe (P)</option> + <option value="Pro->Pyrrolidinone (P)">Pro->Pyrrolidinone (P)</option> + <option value="Pro->Pyrrolidone (P)">Pro->Pyrrolidone (P)</option> + <option value="Pro->Ser (P)">Pro->Ser (P)</option> + <option value="Pro->Thr (P)">Pro->Thr (P)</option> + <option value="Pro->Trp (P)">Pro->Trp (P)</option> + <option value="Pro->Tyr (P)">Pro->Tyr (P)</option> + <option value="Pro->Val (P)">Pro->Val (P)</option> + <option value="Pro->Xle (P)">Pro->Xle (P)</option> + <option value="Pro->pyro-Glu (P)">Pro->pyro-Glu (P)</option> + <option value="Propargylamine (C-term)">Propargylamine (C-term)</option> + <option value="Propargylamine (D)">Propargylamine (D)</option> + <option value="Propargylamine (E)">Propargylamine (E)</option> + <option value="Propionamide (C)">Propionamide (C)</option> + <option value="Propionamide (K)">Propionamide (K)</option> + <option value="Propionamide (N-term)">Propionamide (N-term)</option> + <option value="Propionamide:2H(3) (C)">Propionamide:2H(3) (C)</option> + <option value="Propionyl (K)">Propionyl (K)</option> + <option value="Propionyl (N-term)">Propionyl (N-term)</option> + <option value="Propionyl (S)">Propionyl (S)</option> + <option value="Propionyl (T)">Propionyl (T)</option> + <option value="Propionyl:13C(3) (K)">Propionyl:13C(3) (K)</option> + <option value="Propionyl:13C(3) (N-term)">Propionyl:13C(3) (N-term)</option> + <option value="Propiophenone (C)">Propiophenone (C)</option> + <option value="Propiophenone (H)">Propiophenone (H)</option> + <option value="Propiophenone (K)">Propiophenone (K)</option> + <option value="Propiophenone (R)">Propiophenone (R)</option> + <option value="Propiophenone (S)">Propiophenone (S)</option> + <option value="Propiophenone (T)">Propiophenone (T)</option> + <option value="Propiophenone (W)">Propiophenone (W)</option> + <option value="Propyl (K)">Propyl (K)</option> + <option 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value="QEQTGG (K)">QEQTGG (K)</option> + <option value="QQQTGG (K)">QQQTGG (K)</option> + <option value="QTGG (K)">QTGG (K)</option> + <option value="Quinone (W)">Quinone (W)</option> + <option value="Quinone (Y)">Quinone (Y)</option> + <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> + <option value="RNPXlink2 (F)">RNPXlink2 (F)</option> + <option value="RNPXlink2 (K)">RNPXlink2 (K)</option> + <option value="RNPXlink2 (L)">RNPXlink2 (L)</option> + <option value="RNPXlink3 (C)">RNPXlink3 (C)</option> + <option value="RNPXlink3 (F)">RNPXlink3 (F)</option> + <option value="RNPXlink4 (C)">RNPXlink4 (C)</option> + <option value="RNPXlink5 (F)">RNPXlink5 (F)</option> + <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option> + <option value="Retinylidene (K)">Retinylidene (K)</option> + <option value="SMA (K)">SMA (K)</option> + <option value="SMA (N-term)">SMA (N-term)</option> + <option value="SMCC-maleimide (C)">SMCC-maleimide (C)</option> + <option value="SPITC (K)">SPITC (K)</option> + <option value="SPITC (N-term)">SPITC (N-term)</option> + <option value="SPITC:13C(6) (K)">SPITC:13C(6) (K)</option> + <option value="SPITC:13C(6) (N-term)">SPITC:13C(6) (N-term)</option> + <option value="SUMO2135 (K)">SUMO2135 (K)</option> + <option value="SUMO3549 (K)">SUMO3549 (K)</option> + <option value="Saligenin (H)">Saligenin (H)</option> + <option value="Saligenin (K)">Saligenin (K)</option> + <option value="SecCarbamidomethyl (C)">SecCarbamidomethyl (C)</option> + <option value="SecNEM (C)">SecNEM (C)</option> + <option value="SecNEM:2H(5) (C)">SecNEM:2H(5) (C)</option> + <option value="Ser->Ala (S)">Ser->Ala (S)</option> + <option value="Ser->Arg (S)">Ser->Arg (S)</option> + <option value="Ser->Asn (S)">Ser->Asn (S)</option> + <option value="Ser->Asp (S)">Ser->Asp (S)</option> + <option value="Ser->Cys (S)">Ser->Cys (S)</option> + <option value="Ser->Gln (S)">Ser->Gln (S)</option> + <option value="Ser->Glu (S)">Ser->Glu (S)</option> + <option value="Ser->Gly (S)">Ser->Gly (S)</option> + <option value="Ser->His (S)">Ser->His (S)</option> + <option value="Ser->Lys (S)">Ser->Lys (S)</option> + <option value="Ser->Met (S)">Ser->Met (S)</option> + <option value="Ser->Phe (S)">Ser->Phe (S)</option> + <option value="Ser->Pro (S)">Ser->Pro (S)</option> + <option value="Ser->Thr (S)">Ser->Thr (S)</option> + <option value="Ser->Trp (S)">Ser->Trp (S)</option> + <option value="Ser->Tyr (S)">Ser->Tyr (S)</option> + <option value="Ser->Val (S)">Ser->Val (S)</option> + <option value="Ser->Xle (S)">Ser->Xle (S)</option> + <option value="Succinyl (K)">Succinyl (K)</option> + <option value="Succinyl (N-term)">Succinyl (N-term)</option> + <option value="Succinyl:13C(4) (K)">Succinyl:13C(4) (K)</option> + <option value="Succinyl:13C(4) (N-term)">Succinyl:13C(4) (N-term)</option> + <option value="Succinyl:2H(4) (K)">Succinyl:2H(4) (K)</option> + <option value="Succinyl:2H(4) (N-term)">Succinyl:2H(4) (N-term)</option> + <option value="SulfanilicAcid (C-term)">SulfanilicAcid (C-term)</option> + <option value="SulfanilicAcid (D)">SulfanilicAcid (D)</option> + <option value="SulfanilicAcid (E)">SulfanilicAcid (E)</option> + <option value="SulfanilicAcid:13C(6) (C-term)">SulfanilicAcid:13C(6) (C-term)</option> + <option value="SulfanilicAcid:13C(6) (D)">SulfanilicAcid:13C(6) (D)</option> + <option value="SulfanilicAcid:13C(6) (E)">SulfanilicAcid:13C(6) (E)</option> + <option value="Sulfide (C)">Sulfide (C)</option> + <option value="Sulfide (D)">Sulfide (D)</option> + <option value="Sulfide (W)">Sulfide (W)</option> + <option value="Sulfo (C)">Sulfo (C)</option> + <option value="Sulfo (S)">Sulfo (S)</option> + <option value="Sulfo (T)">Sulfo (T)</option> + <option value="Sulfo (Y)">Sulfo (Y)</option> + <option value="Sulfo-NHS-LC-LC-Biotin (K)">Sulfo-NHS-LC-LC-Biotin (K)</option> + <option value="Sulfo-NHS-LC-LC-Biotin (N-term)">Sulfo-NHS-LC-LC-Biotin (N-term)</option> + <option value="SulfoGMBS (C)">SulfoGMBS (C)</option> + <option value="SulfurDioxide (C)">SulfurDioxide (C)</option> + <option value="TAMRA-FP (S)">TAMRA-FP (S)</option> + <option value="TAMRA-FP (Y)">TAMRA-FP (Y)</option> + <option value="TMAB (K)">TMAB (K)</option> + <option value="TMAB (N-term)">TMAB (N-term)</option> + <option value="TMAB:2H(9) (K)">TMAB:2H(9) (K)</option> + <option value="TMAB:2H(9) (N-term)">TMAB:2H(9) (N-term)</option> + <option value="TMPP-Ac (N-term)">TMPP-Ac (N-term)</option> + <option value="TMT (H)">TMT (H)</option> + <option value="TMT (K)">TMT (K)</option> + <option value="TMT (N-term)">TMT (N-term)</option> + <option value="TMT (S)">TMT (S)</option> + <option value="TMT (T)">TMT (T)</option> + <option value="TMT2plex (H)">TMT2plex (H)</option> + <option value="TMT2plex (K)">TMT2plex (K)</option> + <option value="TMT2plex (N-term)">TMT2plex (N-term)</option> + <option value="TMT2plex (S)">TMT2plex (S)</option> + <option value="TMT2plex (T)">TMT2plex (T)</option> + <option value="TMT6plex (H)">TMT6plex (H)</option> + <option value="TMT6plex (K)">TMT6plex (K)</option> + <option value="TMT6plex (N-term)">TMT6plex (N-term)</option> + <option value="TMT6plex (S)">TMT6plex (S)</option> + <option value="TMT6plex (T)">TMT6plex (T)</option> + <option value="TNBS (K)">TNBS (K)</option> + <option value="TNBS (N-term)">TNBS (N-term)</option> + <option value="Thiadiazole (C)">Thiadiazole (C)</option> + <option value="Thiazolidine (N-term C)">Thiazolidine (N-term C)</option> + <option value="Thioacyl (K)">Thioacyl (K)</option> + <option value="Thioacyl (N-term)">Thioacyl (N-term)</option> + <option value="Thiophos-S-S-biotin (S)">Thiophos-S-S-biotin (S)</option> + <option value="Thiophos-S-S-biotin (T)">Thiophos-S-S-biotin (T)</option> + <option value="Thiophos-S-S-biotin (Y)">Thiophos-S-S-biotin (Y)</option> + <option value="Thiophospho (S)">Thiophospho (S)</option> + <option value="Thiophospho (T)">Thiophospho (T)</option> + <option value="Thiophospho (Y)">Thiophospho (Y)</option> + <option value="Thr->Ala (T)">Thr->Ala (T)</option> + <option value="Thr->Arg (T)">Thr->Arg (T)</option> + <option value="Thr->Asn (T)">Thr->Asn (T)</option> + <option value="Thr->Asp (T)">Thr->Asp (T)</option> + <option value="Thr->Cys (T)">Thr->Cys (T)</option> + <option value="Thr->Gln (T)">Thr->Gln (T)</option> + <option value="Thr->Glu (T)">Thr->Glu (T)</option> + <option value="Thr->Gly (T)">Thr->Gly (T)</option> + <option value="Thr->His (T)">Thr->His (T)</option> + <option value="Thr->Lys (T)">Thr->Lys (T)</option> + <option value="Thr->Met (T)">Thr->Met (T)</option> + <option value="Thr->Phe (T)">Thr->Phe (T)</option> + <option value="Thr->Pro (T)">Thr->Pro (T)</option> + <option value="Thr->Ser (T)">Thr->Ser (T)</option> + <option value="Thr->Trp (T)">Thr->Trp (T)</option> + <option value="Thr->Tyr (T)">Thr->Tyr (T)</option> + <option value="Thr->Val (T)">Thr->Val (T)</option> + <option value="Thr->Xle (T)">Thr->Xle (T)</option> + <option value="Thrbiotinhydrazide (T)">Thrbiotinhydrazide (T)</option> + <option value="Thyroxine (Y)">Thyroxine (Y)</option> + <option value="Triiodo (Y)">Triiodo (Y)</option> + <option value="Triiodothyronine (Y)">Triiodothyronine (Y)</option> + <option value="Trimethyl (K)">Trimethyl (K)</option> + <option value="Trimethyl (R)">Trimethyl (R)</option> + <option value="Trimethyl:13C(3)2H(9) (K)">Trimethyl:13C(3)2H(9) (K)</option> + <option value="Trimethyl:13C(3)2H(9) (R)">Trimethyl:13C(3)2H(9) (R)</option> + <option value="Trimethyl:2H(9) (K)">Trimethyl:2H(9) (K)</option> + <option value="Trimethyl:2H(9) (R)">Trimethyl:2H(9) (R)</option> + <option value="Trioxidation (C)">Trioxidation (C)</option> + <option value="Trioxidation (W)">Trioxidation (W)</option> + <option value="Trioxidation (Y)">Trioxidation (Y)</option> + <option value="Trp->Ala (W)">Trp->Ala (W)</option> + <option value="Trp->Arg (W)">Trp->Arg (W)</option> + <option value="Trp->Asn (W)">Trp->Asn (W)</option> + <option value="Trp->Asp (W)">Trp->Asp (W)</option> + <option value="Trp->Cys (W)">Trp->Cys (W)</option> + <option value="Trp->Gln (W)">Trp->Gln (W)</option> + <option value="Trp->Glu (W)">Trp->Glu (W)</option> + <option value="Trp->Gly (W)">Trp->Gly (W)</option> + <option value="Trp->His (W)">Trp->His (W)</option> + <option value="Trp->Hydroxykynurenin (W)">Trp->Hydroxykynurenin (W)</option> + <option value="Trp->Kynurenin (W)">Trp->Kynurenin (W)</option> + <option value="Trp->Lys (W)">Trp->Lys (W)</option> + <option value="Trp->Met (W)">Trp->Met (W)</option> + <option value="Trp->Oxolactone (W)">Trp->Oxolactone (W)</option> + <option value="Trp->Phe (W)">Trp->Phe (W)</option> + <option value="Trp->Pro (W)">Trp->Pro (W)</option> + <option value="Trp->Ser (W)">Trp->Ser (W)</option> + <option value="Trp->Thr (W)">Trp->Thr (W)</option> + <option value="Trp->Tyr (W)">Trp->Tyr (W)</option> + <option value="Trp->Val (W)">Trp->Val (W)</option> + <option value="Trp->Xle (W)">Trp->Xle (W)</option> + <option value="Tyr->Ala (Y)">Tyr->Ala (Y)</option> + <option value="Tyr->Arg (Y)">Tyr->Arg (Y)</option> + <option value="Tyr->Asn (Y)">Tyr->Asn (Y)</option> + <option value="Tyr->Asp (Y)">Tyr->Asp (Y)</option> + <option value="Tyr->Cys (Y)">Tyr->Cys (Y)</option> + <option value="Tyr->Dha (Y)">Tyr->Dha (Y)</option> + <option value="Tyr->Gln (Y)">Tyr->Gln (Y)</option> + <option value="Tyr->Glu (Y)">Tyr->Glu (Y)</option> + <option value="Tyr->Gly (Y)">Tyr->Gly (Y)</option> + <option value="Tyr->His (Y)">Tyr->His (Y)</option> + <option value="Tyr->Lys (Y)">Tyr->Lys (Y)</option> + <option value="Tyr->Met (Y)">Tyr->Met (Y)</option> + <option value="Tyr->Phe (Y)">Tyr->Phe (Y)</option> + <option value="Tyr->Pro (Y)">Tyr->Pro (Y)</option> + <option value="Tyr->Ser (Y)">Tyr->Ser (Y)</option> + <option value="Tyr->Thr (Y)">Tyr->Thr (Y)</option> + <option value="Tyr->Trp (Y)">Tyr->Trp (Y)</option> + <option value="Tyr->Val (Y)">Tyr->Val (Y)</option> + <option value="Tyr->Xle (Y)">Tyr->Xle (Y)</option> + <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> + <option value="Ub-VME (C)">Ub-VME (C)</option> + <option value="Ub-amide (C)">Ub-amide (C)</option> + <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> + <option value="UgiJoullie (D)">UgiJoullie (D)</option> + <option value="UgiJoullie (E)">UgiJoullie (E)</option> + <option value="UgiJoullieProGly (D)">UgiJoullieProGly (D)</option> + <option value="UgiJoullieProGly (E)">UgiJoullieProGly (E)</option> + <option value="UgiJoullieProGlyProGly (D)">UgiJoullieProGlyProGly (D)</option> + <option value="UgiJoullieProGlyProGly (E)">UgiJoullieProGlyProGly (E)</option> + <option value="VFQQQTGG (K)">VFQQQTGG (K)</option> + <option value="VIEVYQEQTGG (K)">VIEVYQEQTGG (K)</option> + <option value="Val->Ala (V)">Val->Ala (V)</option> + <option value="Val->Arg (V)">Val->Arg (V)</option> + <option value="Val->Asn (V)">Val->Asn (V)</option> + <option value="Val->Asp (V)">Val->Asp (V)</option> + <option value="Val->Cys (V)">Val->Cys (V)</option> + <option value="Val->Gln (V)">Val->Gln (V)</option> + <option value="Val->Glu (V)">Val->Glu (V)</option> + <option value="Val->Gly (V)">Val->Gly (V)</option> + <option value="Val->His (V)">Val->His (V)</option> + <option value="Val->Lys (V)">Val->Lys (V)</option> + <option value="Val->Met (V)">Val->Met (V)</option> + <option value="Val->Phe (V)">Val->Phe (V)</option> + <option value="Val->Pro (V)">Val->Pro (V)</option> + <option value="Val->Ser (V)">Val->Ser (V)</option> + <option value="Val->Thr (V)">Val->Thr (V)</option> + <option value="Val->Trp (V)">Val->Trp (V)</option> + <option value="Val->Tyr (V)">Val->Tyr (V)</option> + <option value="Val->Xle (V)">Val->Xle (V)</option> + <option value="Withaferin (C)">Withaferin (C)</option> + <option value="Xle->Ala (I)">Xle->Ala (I)</option> + <option value="Xle->Ala (L)">Xle->Ala (L)</option> + <option value="Xle->Arg (I)">Xle->Arg (I)</option> + <option value="Xle->Arg (L)">Xle->Arg (L)</option> + <option value="Xle->Asn (I)">Xle->Asn (I)</option> + <option value="Xle->Asn (L)">Xle->Asn (L)</option> + <option value="Xle->Asp (I)">Xle->Asp (I)</option> + <option value="Xle->Asp (L)">Xle->Asp (L)</option> + <option value="Xle->Cys (I)">Xle->Cys (I)</option> + <option value="Xle->Cys (L)">Xle->Cys (L)</option> + <option value="Xle->Gln (I)">Xle->Gln (I)</option> + <option value="Xle->Gln (L)">Xle->Gln (L)</option> + <option value="Xle->Glu (I)">Xle->Glu (I)</option> + <option value="Xle->Glu (L)">Xle->Glu (L)</option> + <option value="Xle->Gly (I)">Xle->Gly (I)</option> + <option value="Xle->Gly (L)">Xle->Gly (L)</option> + <option value="Xle->His (I)">Xle->His (I)</option> + <option value="Xle->His (L)">Xle->His (L)</option> + <option value="Xle->Lys (I)">Xle->Lys (I)</option> + <option value="Xle->Lys (L)">Xle->Lys (L)</option> + <option value="Xle->Met (I)">Xle->Met (I)</option> + <option value="Xle->Met (L)">Xle->Met (L)</option> + <option value="Xle->Phe (I)">Xle->Phe (I)</option> + <option value="Xle->Phe (L)">Xle->Phe (L)</option> + <option value="Xle->Pro (I)">Xle->Pro (I)</option> + <option value="Xle->Pro (L)">Xle->Pro (L)</option> + <option value="Xle->Ser (I)">Xle->Ser (I)</option> + <option value="Xle->Ser (L)">Xle->Ser (L)</option> + <option value="Xle->Thr (I)">Xle->Thr (I)</option> + <option value="Xle->Thr (L)">Xle->Thr (L)</option> + <option value="Xle->Trp (I)">Xle->Trp (I)</option> + <option value="Xle->Trp (L)">Xle->Trp (L)</option> + <option value="Xle->Tyr (I)">Xle->Tyr (I)</option> + <option value="Xle->Tyr (L)">Xle->Tyr (L)</option> + <option value="Xle->Val (I)">Xle->Val (I)</option> + <option value="Xle->Val (L)">Xle->Val (L)</option> + <option value="Xlink:B10621 (C)">Xlink:B10621 (C)</option> + <option value="Xlink:DMP (K)">Xlink:DMP (K)</option> + <option value="Xlink:DMP-de (K)">Xlink:DMP-de (K)</option> + <option value="Xlink:DMP-s (K)">Xlink:DMP-s (K)</option> + <option value="Xlink:DSS (K)">Xlink:DSS (K)</option> + <option value="Xlink:DST (K)">Xlink:DST (K)</option> + <option value="Xlink:DTSSP (K)">Xlink:DTSSP (K)</option> + <option value="Xlink:EGS (K)">Xlink:EGS (K)</option> + <option value="Xlink:EGScleaved (K)">Xlink:EGScleaved (K)</option> + <option value="Xlink:SMCC (C)">Xlink:SMCC (C)</option> + <option value="Xlink:SSD (K)">Xlink:SSD (K)</option> + <option value="ZGB (K)">ZGB (K)</option> + <option value="ZGB (N-term)">ZGB (N-term)</option> + <option value="a-type-ion (C-term)">a-type-ion (C-term)</option> + <option value="azole (C)">azole (C)</option> + <option value="azole (S)">azole (S)</option> + <option value="benzylguanidine (K)">benzylguanidine (K)</option> + <option value="biotinAcrolein298 (C)">biotinAcrolein298 (C)</option> + <option value="biotinAcrolein298 (H)">biotinAcrolein298 (H)</option> + <option value="biotinAcrolein298 (K)">biotinAcrolein298 (K)</option> + <option value="bisANS-sulfonates (K)">bisANS-sulfonates (K)</option> + <option value="bisANS-sulfonates (S)">bisANS-sulfonates (S)</option> + <option value="bisANS-sulfonates (T)">bisANS-sulfonates (T)</option> + <option value="cGMP (C)">cGMP (C)</option> + <option value="cGMP (S)">cGMP (S)</option> + <option value="cGMP+RMP-loss (C)">cGMP+RMP-loss (C)</option> + <option value="cGMP+RMP-loss (S)">cGMP+RMP-loss (S)</option> + <option value="cysTMT (C)">cysTMT (C)</option> + <option value="cysTMT6plex (C)">cysTMT6plex (C)</option> + <option value="dHex (N)">dHex (N)</option> + <option value="dHex (S)">dHex (S)</option> + <option value="dHex (T)">dHex (T)</option> + <option value="dHex(1)Hex(1) (S)">dHex(1)Hex(1) (S)</option> + <option value="dHex(1)Hex(1) (T)">dHex(1)Hex(1) (T)</option> + <option value="dHex(1)Hex(2) (S)">dHex(1)Hex(2) (S)</option> + <option value="dHex(1)Hex(2) (T)">dHex(1)Hex(2) (T)</option> + <option value="dHex(1)Hex(3) (S)">dHex(1)Hex(3) (S)</option> + <option value="dHex(1)Hex(3) (T)">dHex(1)Hex(3) (T)</option> + <option value="dHex(1)Hex(3)HexNAc(4) (N)">dHex(1)Hex(3)HexNAc(4) (N)</option> + <option value="dHex(1)Hex(4) (S)">dHex(1)Hex(4) (S)</option> + <option value="dHex(1)Hex(4) (T)">dHex(1)Hex(4) (T)</option> + <option value="dHex(1)Hex(4)HexNAc(4) (N)">dHex(1)Hex(4)HexNAc(4) (N)</option> + <option value="dHex(1)Hex(5) (S)">dHex(1)Hex(5) (S)</option> + <option value="dHex(1)Hex(5) (T)">dHex(1)Hex(5) (T)</option> + <option value="dHex(1)Hex(5)HexNAc(4) (N)">dHex(1)Hex(5)HexNAc(4) (N)</option> + <option value="dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N)">dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N)</option> + <option value="dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N)">dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N)</option> + <option value="dHex(1)Hex(6) (S)">dHex(1)Hex(6) (S)</option> + <option value="dHex(1)Hex(6) (T)">dHex(1)Hex(6) (T)</option> + <option value="dNIC (K)">dNIC (K)</option> + <option value="dNIC (N-term)">dNIC (N-term)</option> + <option value="dichlorination (C)">dichlorination (C)</option> + <option value="dichlorination (Y)">dichlorination (Y)</option> + <option value="ethylamino (S)">ethylamino (S)</option> + <option value="ethylamino (T)">ethylamino (T)</option> + <option value="ethylsulfonylethyl (C)">ethylsulfonylethyl (C)</option> + <option value="ethylsulfonylethyl (H)">ethylsulfonylethyl (H)</option> + <option value="ethylsulfonylethyl (K)">ethylsulfonylethyl (K)</option> + <option value="glucosone (R)">glucosone (R)</option> + <option value="glycidamide (K)">glycidamide (K)</option> + <option value="glycidamide (N-term)">glycidamide (N-term)</option> + <option value="iTRAQ4plex (H)">iTRAQ4plex (H)</option> + <option value="iTRAQ4plex (K)">iTRAQ4plex (K)</option> + <option value="iTRAQ4plex (N-term)">iTRAQ4plex (N-term)</option> + <option value="iTRAQ4plex (S)">iTRAQ4plex (S)</option> + <option value="iTRAQ4plex (T)">iTRAQ4plex (T)</option> + <option value="iTRAQ4plex (Y)">iTRAQ4plex (Y)</option> + <option value="iTRAQ4plex114 (K)">iTRAQ4plex114 (K)</option> + <option value="iTRAQ4plex114 (N-term)">iTRAQ4plex114 (N-term)</option> + <option value="iTRAQ4plex114 (Y)">iTRAQ4plex114 (Y)</option> + <option value="iTRAQ4plex115 (K)">iTRAQ4plex115 (K)</option> + <option value="iTRAQ4plex115 (N-term)">iTRAQ4plex115 (N-term)</option> + <option value="iTRAQ4plex115 (Y)">iTRAQ4plex115 (Y)</option> + <option value="iTRAQ8plex (H)">iTRAQ8plex (H)</option> + <option value="iTRAQ8plex (K)">iTRAQ8plex (K)</option> + <option value="iTRAQ8plex (N-term)">iTRAQ8plex (N-term)</option> + <option value="iTRAQ8plex (S)">iTRAQ8plex (S)</option> + <option value="iTRAQ8plex (T)">iTRAQ8plex (T)</option> + <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> + <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> + <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> + <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> + <option value="iodoTMT (C)">iodoTMT (C)</option> + <option value="iodoTMT (D)">iodoTMT (D)</option> + <option value="iodoTMT (E)">iodoTMT (E)</option> + <option value="iodoTMT (H)">iodoTMT (H)</option> + <option value="iodoTMT (K)">iodoTMT (K)</option> + <option value="iodoTMT6plex (C)">iodoTMT6plex (C)</option> + <option value="iodoTMT6plex (D)">iodoTMT6plex (D)</option> + <option value="iodoTMT6plex (E)">iodoTMT6plex (E)</option> + <option value="iodoTMT6plex (H)">iodoTMT6plex (H)</option> + <option value="iodoTMT6plex (K)">iodoTMT6plex (K)</option> + <option value="lapachenole (C)">lapachenole (C)</option> + <option value="mTRAQ (H)">mTRAQ (H)</option> + <option value="mTRAQ (K)">mTRAQ (K)</option> + <option value="mTRAQ (N-term)">mTRAQ (N-term)</option> + <option value="mTRAQ (S)">mTRAQ (S)</option> + <option value="mTRAQ (T)">mTRAQ (T)</option> + <option value="mTRAQ (Y)">mTRAQ (Y)</option> + <option value="mTRAQ:13C(3)15N(1) (H)">mTRAQ:13C(3)15N(1) (H)</option> + <option value="mTRAQ:13C(3)15N(1) (K)">mTRAQ:13C(3)15N(1) (K)</option> + <option value="mTRAQ:13C(3)15N(1) (N-term)">mTRAQ:13C(3)15N(1) (N-term)</option> + <option value="mTRAQ:13C(3)15N(1) (S)">mTRAQ:13C(3)15N(1) (S)</option> + <option value="mTRAQ:13C(3)15N(1) (T)">mTRAQ:13C(3)15N(1) (T)</option> + <option value="mTRAQ:13C(3)15N(1) (Y)">mTRAQ:13C(3)15N(1) (Y)</option> + <option value="mTRAQ:13C(6)15N(2) (H)">mTRAQ:13C(6)15N(2) (H)</option> + <option value="mTRAQ:13C(6)15N(2) (K)">mTRAQ:13C(6)15N(2) (K)</option> + <option value="mTRAQ:13C(6)15N(2) (N-term)">mTRAQ:13C(6)15N(2) (N-term)</option> + <option value="mTRAQ:13C(6)15N(2) (S)">mTRAQ:13C(6)15N(2) (S)</option> + <option value="mTRAQ:13C(6)15N(2) (T)">mTRAQ:13C(6)15N(2) (T)</option> + <option value="mTRAQ:13C(6)15N(2) (Y)">mTRAQ:13C(6)15N(2) (Y)</option> + <option value="maleimide (C)">maleimide (C)</option> + <option value="maleimide (K)">maleimide (K)</option> + <option value="maleimide3 (C)">maleimide3 (C)</option> + <option value="maleimide3 (K)">maleimide3 (K)</option> + <option value="maleimide5 (C)">maleimide5 (C)</option> + <option value="maleimide5 (K)">maleimide5 (K)</option> + <option value="methylsulfonylethyl (C)">methylsulfonylethyl (C)</option> + <option value="methylsulfonylethyl (H)">methylsulfonylethyl (H)</option> + <option value="methylsulfonylethyl (K)">methylsulfonylethyl (K)</option> + <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> + <option value="phosphoRibosyl (D)">phosphoRibosyl (D)</option> + <option value="phosphoRibosyl (E)">phosphoRibosyl (E)</option> + <option value="phosphoRibosyl (R)">phosphoRibosyl (R)</option> + <option value="probiotinhydrazide (P)">probiotinhydrazide (P)</option> + <option value="pupylation (K)">pupylation (K)</option> + <option value="pyrophospho (S)">pyrophospho (S)</option> + <option value="pyrophospho (T)">pyrophospho (T)</option> + <option value="sulfo+amino (Y)">sulfo+amino (Y)</option> + <option value="thioacylPA (K)">thioacylPA (K)</option> + <option value="trifluoro (L)">trifluoro (L)</option> + </param> + </repeat> + <expand macro="advanced_options"> + <param name="param_legacy_conversion" display="radio" type="boolean" truevalue="-legacy_conversion" falsevalue="" checked="false" optional="True" label="Use the indirect conversion of MS-GF+ results to idXML via export to TSV" help="(-legacy_conversion) Try this only if the default conversion takes too long or uses too much memory"/> + <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_out" format="idxml"/> + <data name="param_mzid_out" format="mzid"/> + </outputs> + <help>MS/MS database search using MS-GF+. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MSGFPlusAdapter.html</help> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SKIP_TOOLS_FILE.txt Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,9 @@ +OMSSAAdapter +MyriMatchAdapter +PepNovoAdapter +SeedListGenerator +SpecLibSearcher +MapAlignerIdentification +MapAlignerPoseClustering +MapAlignerSpectrum +MapAlignerRTTransformer
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datatypes_conf.xml Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,33 @@ +<?xml version='1.0' encoding='UTF-8'?> +<datatypes> + <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications"> + <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml"/> + <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml"/> + <datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXM" mimetype="application/xml"/> + <datatype extension="txt" type="galaxy.datatypes.data:Text"/> + <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular"/> + <datatype extension="txt" type="galaxy.datatypes.data:Text"/> + <datatype extension="fasta" type="galaxy.datatypes.sequence:Fasta"/> + <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf"/> + <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml"/> + <datatype extension="trafoxml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"/> + <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml"/> + <datatype extension="msp" type="galaxy.datatypes.proteomics:Msp"/> + <datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html"/> + <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular"/> + <datatype extension="fasta" type="galaxy.datatypes.sequence:Fasta"/> + <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular"/> + <datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml"/> + <datatype extension="xml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"/> + <datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml"/> + <datatype extension="grid" type="galaxy.datatypes.data:Grid"/> + <datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml"/> + <datatype extension="png" type="galaxy.datatypes.images:Png" mimetype="image/png"/> + <datatype extension="qcml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"/> + <datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml"/> + <datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html"/> + <datatype extension="txt" type="galaxy.datatypes.data:Text"/> + <datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml"/> + <datatype extension="txt" type="galaxy.datatypes.data:Text"/> + </registration> +</datatypes>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/filetypes.txt Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,29 @@ +# CTD type # Galaxy type # Long Galaxy data type # Mimetype +csv tabular galaxy.datatypes.tabular:Tabular +fasta fasta galaxy.datatypes.sequence:Fasta +FASTA fasta galaxy.datatypes.sequence:Fasta +ini txt galaxy.datatypes.data:Text +txt txt galaxy.datatypes.data:Text +options txt galaxy.datatypes.data:Text +grid grid galaxy.datatypes.data:Grid +html html galaxy.datatypes.text:Html text/html +HTML html galaxy.datatypes.text:Html text/html +TraML traml galaxy.datatypes.proteomics:TraML application/xml +traML traml galaxy.datatypes.proteomics:TraML application/xml +XML xml galaxy.datatypes.xml:GenericXml application/xml +consensusXML consensusxml galaxy.datatypes.proteomics:ConsensusXML application/xml +edta tabular galaxy.datatypes.tabular:Tabular +featureXML featurexml galaxy.datatypes.proteomics:FeatureXML application/xml +idXML idxml galaxy.datatypes.proteomics:IdXM application/xml +mzML mzml galaxy.datatypes.proteomics:MzML application/xml +mzXML mzxml galaxy.datatypes.proteomics:MzXML application/xml +pepXML pepxml galaxy.datatypes.proteomics:PepXml application/xml +qcML qcml galaxy.datatypes.xml:GenericXml application/xml +trafoXML trafoxml galaxy.datatypes.xml:GenericXml application/xml +tsv tabular galaxy.datatypes.tabular:Tabular +xsd txt galaxy.datatypes.data:Text +mzq mzq galaxy.datatypes.proteomics:MzQuantML application/xml +msp msp galaxy.datatypes.proteomics:Msp +mzid mzid galaxy.datatypes.proteomics:MzIdentML application/xml +png png galaxy.datatypes.images:Png image/png +mgf mgf galaxy.datatypes.proteomics:Mgf \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,35 @@ +<?xml version='1.0' encoding='UTF-8'?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="2.1">openms</requirement> + <requirement type="package" version="15.12.15.2">xtandem</requirement> + <requirement type="package" version="1.0">fido</requirement> + <requirement type="package" version="2016.10.26">msgf_plus</requirement> + </requirements> + </xml> + <xml name="stdio"> + <stdio> + <exit_code range="1:"/> + <exit_code range=":-1"/> + <regex match="Exception:"/> + </stdio> + </xml> + <xml name="references"> + <citations> + <citation type="doi">doi:10.1186/1471-2105-9-163</citation> + </citations> + </xml> + <xml name="advanced_options"> + <conditional name="adv_opts"> + <param name="adv_opts_selector" type="select" label="Advanced Options"> + <option value="basic" selected="True">Hide Advanced Options</option> + <option value="advanced">Show Advanced Options</option> + </param> + <when value="basic"/> + <when value="advanced"> + <yield/> + </when> + </conditional> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.md Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,165 @@ +Galaxy wrapper for OpenMS +========================= + +OpenMS is an open-source software C++ library for LC/MS data management and analyses. +It offers an infrastructure for the rapid development of mass spectrometry related software. +OpenMS is free software available under the three clause BSD license and runs under Windows, MacOSX and Linux. + +More informations are available at: + + * https://github.com/OpenMS/OpenMS + * http://open-ms.sourceforge.net + + +Generating OpenMS wrappers +========================== + + * install OpenMS (you can do this automatically through the Tool Shed) + * create a folder called CTD + * inside of your new installed openms/bin folder, execute the following command: + + ```bash + for binary in `ls`; do ./$binary -write_ctd /PATH/TO/YOUR/CTD; done; + ``` + + * `MetaProSIP.ctd` includes a not supported character: To use it, search for `²` and replace it (e.g. with `^2`). + + * clone or install CTDopts + + ```bash + git clone https://github.com/genericworkflownodes/CTDopts + ``` + + * add CTDopts to your `$PYTHONPATH` + + ```bash + export PYTHONPATH=/home/user/CTDopts/ + ``` + + * clone or install CTD2Galaxy + + ```bash + git clone https://github.com/blankclemens/CTD2Galaxy.git + ``` + + * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. + + ```bash + python generator.py \ + -i /PATH/TO/YOUR/CTD/*.ctd \ + -o ./PATH/TO/YOUR/WRAPPERS/ -t tool.conf \ + -d datatypes_conf.xml -g openms \ + -b version log debug test no_progress threads \ + in_type executable myrimatch_executable \ + fido_executable fidocp_executable \ + omssa_executable pepnovo_executable \ + xtandem_executable param_model_directory \ + java_executable java_memory java_permgen \ + -f /PATH/TO/filetypes.txt -m /PATH/TO/macros.xml \ + -s PATH/TO/SKIP_TOOLS_FILES.txt + ``` + + + * As last step you need to change manually the binary names of all external binaries you want to use in OpenMS. For example: + + ``` + sed -i '13 a\-fido_executable fido' wrappers/FidoAdapter.xml + sed -i '13 a\-fidocp_executable fido_choose_parameters' wrappers/FidoAdapter.xml + sed -i '13 a\-myrimatch_executable myrimatch' wrappers/MyriMatchAdapter.xml + sed -i '13 a\-omssa_executable omssa' wrappers/OMSSAAdapter.xml + sed -i '13 a\-xtandem_executable xtandem' wrappers/XTandemAdapter.xml + ``` + + * For some tools, additional work has to be done. In `MSGFPlusAdapter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): + + ``` + <command><![CDATA[ + + ## check input file type + #set $in_type = $param_in.ext + + ## create the symlinks to set the proper file extension, since msgf uses them to choose how to handle the input files + ln -s '$param_in' 'param_in.${in_type}' && + ln -s '$param_database' param_database.fasta && + ## find location of the MSGFPlus.jar file of the msgf_plus conda package + MSGF_JAR=\$(msgf_plus -get_jar_path) && + + MSGFPlusAdapter + -executable \$MSGF_JAR + #if $param_in: + -in 'param_in.${in_type}' + #end if + #if $param_out: + -out $param_out + #end if + #if $param_mzid_out: + -mzid_out $param_mzid_out + #end if + #if $param_database: + -database param_database.fasta + #end if + + [...] + ]]> + ``` + * In `PeakPickerHiRes.xml`, the parameter `report_FWHM_unit` has to be put in quotation marks. Look for the following line + + -algorithm:report_FWHM_unit $param_algorithm_report_FWHM_unit + + and change it to + + -algorithm:report_FWHM_unit "$param_algorithm_report_FWHM_unit" + + * In `FileConverter.xml` add `auto_format="true"` to the output, e.g.: + + <data name="param_out" metadata_source="param_in" auto_format="true"/> + + * To add an example test case to `DecoyDatabase.xml` add the following after the output section. If standard settings change you might have to adjust the options and/or the test files. + + ``` + <tests> + <test> + <param name="param_in" value="DecoyDatabase_input.fasta"/> + <output name="param_out" file="DecoyDatabase_output.fasta"/> + </test> + </tests> + ``` + + + * These tools have multiple outputs (number of inputs = number of outputs) which is not yet supported in Galaxy-stable and are therefore in `SKIP_TOOLS_FILES.txt`: + * SeedListGenerator + * SpecLibSearcher + * MapAlignerIdentification + * MapAlignerPoseClustering + * MapAlignerSpectrum + * MapAlignerRTTransformer + + * Additionally cause of lacking dependencies, the following adapters have been removed in `SKIP_TOOLS_FILES.txt` as well: + * OMSSAAdapter + * MyrimatchAdapter + + * Additionally cause of a problematic parameter (-model_directory), the following adapter has been removed: + * PepNovoAdapter + + +Licence (MIT) +============= + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,4 @@ +<?xml version="1.0"?> +<repositories description="Required proteomics dependencies."> + <repository changeset_revision="300fc3aa6954" name="proteomics_datatypes" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" /> +</repositories>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DecoyDatabase_input.fasta Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,146 @@ +>12 +MERMLPLLALGLLAAGFCPAVLCHPNSPLDEENLTQENQDRGTHVDLGLASANVDFAFSLYKQLVLKAPDKNVIFSPLSI +STALAFLSLGAHNTTLTEILKGLKFNLTETSEAEIHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRL +YGSEAFATDFQDSAAAKKLINDYVKNGTRGKITDLIKDLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVM +VPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISR +DYNLNDILLQLGIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITLLSALVETRTIVRFNRPFL +MIIVPTDTQNIFFMSKVTNPKQA +>18 +MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMK +QLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQ +NASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYR +SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS +FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG +DNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMM +TGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLL +DLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF +RDHHAHLFLNIFSDILADFK +>88 +MNQIEPGVQYNYVYDEDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIE +NIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAE +EIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSW +KDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKP +DERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRT +IPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAF +MPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGK +EQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVN +DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQ +DMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYS +TVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEI +ARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHI +RVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRA +CLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILAS +DKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYAAFSSALYGESDL +>112 +MSWFSGLLVPKVDERKTAWGERNGQKRSRRRGTRAGGFCTPRYMSCLRDAEPPSPTPAGP +PRCPWQDDAFIRRGGPGKGKELGLRAVALGFEDTEVTTTAGGTAEVAPDAVPRSGRSCWR +RLVQVFQSKQFRSAKLERLYQRYFFQMNQSSLTLLMAVLVLLTAVLLAFHAAPARPQPAY +VALLACAAALFVGLMVVCNRHSFRQDSMWVVSYVVLGILAAVQVGGALAADPRSPSAGLW +CPVFFVYIAYTLLPIRMRAAVLSGLGLSTLHLILAWQLNRGDAFLWKQLGANVLLFLCTN +VIGICTHYPAEVSQRQAFQETRGYIQARLHLQHENRQQERLLLSVLPQHVAMEMKEDINT +KKEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHC +LRIKILGDCYYCVSGLPEARADHAHCCVEMGVDMIEAISLVREVTGVNVNMRVGIHSGRV +HCGVLGLRKWQFDVWSNDVTLANHMEAGGRAGRIHITRATLQYLNGDYEVEPGRGGERNA +YLKEQHIETFLILGASQKRKEEKAMLAKLQRTRANSMEGLMPRWVPDRAFSRTKDSKAFR +QMGIDDSSKDNRGTQDALNPEDEVDEFLSRAIDARSIDQLRKDHVRRFLLTFQREDLEKK +YSRKVDPRFGAYVACALLVFCFICFIQLLIFPHSTLMLGIYASIFLLLLITVLICAVYSC +GSLFPKALQRLSRSIVRSRAHSTAVGIFSVLLVFTSAIANMFTCNHTPIRSCAARMLNLT +PADITACHLQQLNYSLGLDAPLCEGTMPTCSFPEYFIGNMLLSLLASSVFLHISSIGKLA +MIFVLGLIYLVLLLLGPPATIFDNYDLLLGVHGLASSNETFDGLDCPAAGRVALKYMTPV +ILLVFALALYLHAQQVESTARLDFLWKLQATGEKEEMEELQAYNRRLLHNILPKDVAAHF +LARERRNDELYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFDEIIS +EERFRQLEKIKTIGSTYMAASGLNASTYDQVGRSHITALADYAMRLMEQMKHINEHSFNN +FQMKIGLNMGPVVAGVIGARKPQYDIWGNTVNVSSRMDSTGVPDRIQVTTDLYQVLAAKG +YQLECRGVVKVKGKGEMTTYFLNGGPSS +>114 +MELSDVRCLTGSEELYTIHPTPPAGDGRSASRPQRLLWQTAVRHITEQRFIHGHRGGSGS +GSGGSGKASDPAGGGPNHHAPQLSGDSALPLYSLGPGERAHSTCGTKVFPERSGSGSASG +SGGGGDLGFLHLDCAPSNSDFFLNGGYSYRGVIFPTLRNSFKSRDLERLYQRYFLGQRRK +SEVVMNVLDVLTKLTLLVLHLSLASAPMDPLKGILLGFFTGIEVVICALVVVRKDTTSHT +YLQYSGVVTWVAMTTQILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAGLGTS +LLQVILQVVIPRLAVISINQVVAQAVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEAR +LRLETENQRQERLVLSVLPRFVVLEMINDMTNVEDEHLQHQFHRIYIHRYENVSILFADV +KGFTNLSTTLSAQELVRMLNELFARFDRLAHEHHCLRIKILGDCYYCVSGLPEPRQDHAH +CCVEMGLSMIKTIRYVRSRTKHDVDMRIGIHSGSVLCGVLGLRKWQFDVWSWDVDIANKL +ESGGIPGRIHISKATLDCLNGDYNVEEGHGKERNEFLRKHNIETYLIKQPEDSLLSLPED +IVKESVSSSDRRNSGATFTEGSWSPELPFDNIVGKQNTLAALTRNSINLLPNHLAQALHV +QSGPEEINKRIEHTIDLRSGDKLRREHIKPFSLMFKDSSLEHKYSQMRDEVFKSNLVCAF +IVLLFITAIQSLLPSSRVMPMTIQFSILIMLHSALVLITTAEDYKCLPLILRKTCCWINE +TYLARNVIIFASILINFLGAILNILWCDFDKSIPLKNLTFNSSAVFTDICSYPEYFVFTG +VLAMVTCAVFLRLNSVLKLAVLLIMIAIYALLTETVYAGLFLRYDNLNHSGEDFLGTKEV +SLLLMAMFLLAVFYHGQQLEYTARLDFLWRVQAKEEINEMKELREHNENMLRNILPSHVA +RHFLEKDRDNEELYSQSYDAVGVMFASIPGFADFYSQTEMNNQGVECLRLLNEIIADFDE +LLGEDRFQDIEKIKTIGSTYMAVSGLSPEKQQCEDKWGHLCALADFSLALTESIQEINKH +SFNNFELRIGISHGSVVAGVIGAKKPQYDIWGKTVNLASRMDSTGVSGRIQVPEETYLIL +KDQGFAFDYRGEIYVKGISEQEGKIKTYFLLGRVQPNPFILPPRRLPGQYSLAAVVLGLV +QSLNRQRQKQLLNENNNTGIIKGHYNRRTLLSPSGTEPGAQAEGTDKSDLP +>143 +MVMGIFANCIFCLKVKYLPQQQKKKLQTDIKENGGKFSFSLNPQCTHIILDNADVLSQYQ +LNSIQKNHVHIANPDFIWKSIREKRLLDVKNYDPYKPLDITPPPDQKASSSEVKTEGLCP +DSATEEEDTVELTEFGMQNVEIPHLPQDFEVAKYNTLEKVGMEGGQEAVVVELQCSRDSR +DCPFLISSHFLLDDGMETRRQFAIKKTSEDASEYFENYIEELKKQGFLLREHFTPEATQL +ASEQLQALLLEEVMNSSTLSQEVSDLVEMIWAEALGHLEHMLLKPVNRISLNDVSKAEGI +LLLVKAALKNGETAEQLQKMMTEFYRLIPHKGTMPKEVNLGLLAKKADLCQLIRDMVNVC +ETNLSKPNPPSLAKYRALRCKIEHVEQNTEEFLRVRKEVLQNHHSKSPVDVLQIFRVGRV +NETTEFLSKLGNVRPLLHGSPVQNIVGILCRGLLLPKVVEDRGVQRTDVGNLGSGIYFSD +SLSTSIKYSHPGETDGTRLLLICDVALGKCMDLHEKDFSLTEAPPGYDSVHGVSQTASVT +TDFEDDEFVVYKTNQVKMKYIIKFSMPGDQIKDFHPSDHTELEEYRPEFSNFSKVEDYQL +PDAKTSSSTKAGLQDASGNLVPLEDVHIKGRIIDTVAQVIVFQTYTNKSHVPIEAKYIFP +LDDKAAVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDVFTVSVGN +LPPKAKVLIKITYITELSILGTVGVFFMPATVAPWQQDKALNENLQDTVEKICIKEIGTK +QSFSLTMSIEMPYVIEFIFSDTHELKQKRTDCKAVISTMEGSSLDSSGFSLHIGLSAAYL +PRMWVEKHPEKESEACMLVFQPDLDVDLPDLASESEVIICLDCSSSMEGVTFLQAKQIAL +HALSLVGEKQKVNIIQFGTGYKELFSYPKHITSNTMAAEFIMSATPTMGNTDFWKTLRYL +SLLYPARGSRNILLVSDGHLQDESLTLQLVKRSRPHTRLFACGIGSTANRHVLRILSQCG +AGVFEYFNAKSKHSWRKQIEDQMTRLCSPSCHSVSVKWQQLNPDVPEALQAPAQVPSLFL +NDRLLVYGFIPHCTQATLCALIQEKEFRTMVSTTELQKTTGTMIHKLAARALIRDYEDGI +LHENETSHEMKKQTLKSLIIKLSKENSLITQFTSFVAVEKRDENESPFPDIPKVSELIAK +EDVDFLPYMSWQGEPQEAVRNQSLLASSEWPELRLSKRKHRKIPFSKRKMELSQPEVSED +FEEDGLGVLPAFTSNLERGGVEKLLDLSWTESCKPTATEPLFKKVSPWETSTSSFFPILA +PAVGSYLPPTARAHSPASLSFASYRQVASFGSAAPPRQFDASQFSQGPVPGTCADWIPQS +ASCPTGPPQNPPSSPYCGIVFSGSSLSSAQSAPLQHPGGFTTRPSAGTFPELDSPQLHFS +LPTDPDPIRGFGSYHPSASSPFHFQPSAASLTANLRLPMASALPEALCSQSRTTPVDLCL +LEESVGSLEGSRCPVFAFQSSDTESDELSEVLQDSCFLQIKCDTKDDSILCFLEVKEEDE +IVCIQHWQDAVPWTELLSLQTEDGFWKLTPELGLILNLNTNGLHSFLKQKGIQSLGVKGR +ECLLDLIATMLVLQFIRTRLEKEGIVFKSLMKMDDASISRNIPWAFEAIKQASEWVRRTE +GQYPSICPRLELGNDWDSATKQLLGLQPISTVSPLHRVLHYSQG +>213 +MKWVTFISLLFLFSSAYSRGVFRRDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPF +EDHVKLVNEVTEFAKTCVADESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEP +ERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLKKYLYEIARRHPYFYAPELLF +FAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV +ARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLK +ECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYAR +RHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDEFKPLVEEPQNLIKQNCELFE +QLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVV +LNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTL +SEKERQIKKQTALVELVKHKPKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLV +AASQAALGL +>230 +MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYR +QVLFSADDRVKKCIGGVIFFHETLYQKDDNGVPFVRTIQDKGIVVGIKVDKGVVPLAGTD +GETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPSALAILENANVLARYASICQQ +NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC +PIKYTPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLNAINRCPLPRPWALTF +SYGRALQASALNAWRGQRDNAGAATEEFIKRAEVNGLAAQGKYEGSGEDGGAAAQSLYIA +NHAY +>231 +MASRLLLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQ +EKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGK +EFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKP +AVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAK +HNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCA +LLSCTSHKDYPFHEEF +>242 +MATYKVRVATGTDLLSGTRDSISLTIVGTQGESHKQLLNHFGRDFATGAVGQYTVQCPQD +LGELIIIRLHKERYAFFPKDPWYCNYVQICAPNGRIYHFPAYQWMDGYETLALREATGKT +TADDSLPVLLEHRKEEIRAKQDFYHWRVFLPGLPSYVHIPSYRPPVRRHRNPNRPEWNGY +IPGFPILINFKATKFLNLNLRYSFLKTASFFVRLGPMALAFKVRGLLDCKHSWKRLKDIR +KIFPGKKSVVSEYVAEHWAEDTFFGYQYLNGVNPGLIRRCTRIPDKFPVTDDMVAPFLGE +GTCLQAELEKGNIYLADYRIMEGIPTVELSGRKQHHCAPLCLLHFGPEGKMMPIAIQLSQ +TPGPDCPIFLPSDSEWDWLLAKTWVRYAEFYSHEAIAHLLETHLIAEAFCLALLRNLPMC +HPLYKLLIPHTRYTVQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLY +LPNDFVERGVQDLPGYYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEI +FKECLLGRESSGFPRCLRTVPELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMR +NPPIQTKGLTTLETFMDTLPDVKTTCITLLVLWTLSREPDDRRPLGHFPDIHFVEEAPRR +SIEAFRQRLNQISHDIRQRNKCLPIPYYYLDPVLIENSISI
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/DecoyDatabase_output.fasta Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,228 @@ +>12 +MERMLPLLALGLLAAGFCPAVLCHPNSPLDEENLTQENQDRGTHVDLGLASANVDFAFSLYKQLVLKAPDKNVIFSPLSI +STALAFLSLGAHNTTLTEILKGLKFNLTETSEAEIHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRL +YGSEAFATDFQDSAAAKKLINDYVKNGTRGKITDLIKDLDSQTMMVLVNYIFFKAKWEMPFDPQDTHQSRFYLSKKKWVM +VPMMSLHHLTIPYFRDEELSCTVVELKYTGNASALFILPDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISR +DYNLNDILLQLGIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEGTEASAATAVKITLLSALVETRTIVRFNRPFL +MIIVPTDTQNIFFMSKVTNPKQA +>18 +MASMLLAQRLACSFQHSYRLLVPGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSQELMKQLNIIQNAEAVHFFCNYEES +RGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLIT +MACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPS +FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHG +CAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIK +REDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVF +RDHHAHLFLNIFSDILADFK +>88 +MNQIEPGVQYNYVYDEDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVIS +GERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLW +CQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKP +DERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKL +EDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLE +HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVN +DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQ +FKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRR +QFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHI +RVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTL +VDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALD +YAAFSSALYGESDL +>112 +MSWFSGLLVPKVDERKTAWGERNGQKRSRRRGTRAGGFCTPRYMSCLRDAEPPSPTPAGPPRCPWQDDAFIRRGGPGKGK +ELGLRAVALGFEDTEVTTTAGGTAEVAPDAVPRSGRSCWRRLVQVFQSKQFRSAKLERLYQRYFFQMNQSSLTLLMAVLV +LLTAVLLAFHAAPARPQPAYVALLACAAALFVGLMVVCNRHSFRQDSMWVVSYVVLGILAAVQVGGALAADPRSPSAGLW +CPVFFVYIAYTLLPIRMRAAVLSGLGLSTLHLILAWQLNRGDAFLWKQLGANVLLFLCTNVIGICTHYPAEVSQRQAFQE +TRGYIQARLHLQHENRQQERLLLSVLPQHVAMEMKEDINTKKEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQEL +VMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCVEMGVDMIEAISLVREVTGVNVNMRVGIHSGRV +HCGVLGLRKWQFDVWSNDVTLANHMEAGGRAGRIHITRATLQYLNGDYEVEPGRGGERNAYLKEQHIETFLILGASQKRK +EEKAMLAKLQRTRANSMEGLMPRWVPDRAFSRTKDSKAFRQMGIDDSSKDNRGTQDALNPEDEVDEFLSRAIDARSIDQL +RKDHVRRFLLTFQREDLEKKYSRKVDPRFGAYVACALLVFCFICFIQLLIFPHSTLMLGIYASIFLLLLITVLICAVYSC +GSLFPKALQRLSRSIVRSRAHSTAVGIFSVLLVFTSAIANMFTCNHTPIRSCAARMLNLTPADITACHLQQLNYSLGLDA +PLCEGTMPTCSFPEYFIGNMLLSLLASSVFLHISSIGKLAMIFVLGLIYLVLLLLGPPATIFDNYDLLLGVHGLASSNET +FDGLDCPAAGRVALKYMTPVILLVFALALYLHAQQVESTARLDFLWKLQATGEKEEMEELQAYNRRLLHNILPKDVAAHF +LARERRNDELYYQSCECVAVMFASIANFSEFYVELEANNEGVECLRLLNEIIADFDEIISEERFRQLEKIKTIGSTYMAA +SGLNASTYDQVGRSHITALADYAMRLMEQMKHINEHSFNNFQMKIGLNMGPVVAGVIGARKPQYDIWGNTVNVSSRMDST +GVPDRIQVTTDLYQVLAAKGYQLECRGVVKVKGKGEMTTYFLNGGPSS +>114 +MELSDVRCLTGSEELYTIHPTPPAGDGRSASRPQRLLWQTAVRHITEQRFIHGHRGGSGSGSGGSGKASDPAGGGPNHHA +PQLSGDSALPLYSLGPGERAHSTCGTKVFPERSGSGSASGSGGGGDLGFLHLDCAPSNSDFFLNGGYSYRGVIFPTLRNS +FKSRDLERLYQRYFLGQRRKSEVVMNVLDVLTKLTLLVLHLSLASAPMDPLKGILLGFFTGIEVVICALVVVRKDTTSHT +YLQYSGVVTWVAMTTQILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAGLGTSLLQVILQVVIPRLAVISINQ +VVAQAVLFMCMNTAGIFISYLSDRAQRQAFLETRRCVEARLRLETENQRQERLVLSVLPRFVVLEMINDMTNVEDEHLQH +QFHRIYIHRYENVSILFADVKGFTNLSTTLSAQELVRMLNELFARFDRLAHEHHCLRIKILGDCYYCVSGLPEPRQDHAH +CCVEMGLSMIKTIRYVRSRTKHDVDMRIGIHSGSVLCGVLGLRKWQFDVWSWDVDIANKLESGGIPGRIHISKATLDCLN +GDYNVEEGHGKERNEFLRKHNIETYLIKQPEDSLLSLPEDIVKESVSSSDRRNSGATFTEGSWSPELPFDNIVGKQNTLA +ALTRNSINLLPNHLAQALHVQSGPEEINKRIEHTIDLRSGDKLRREHIKPFSLMFKDSSLEHKYSQMRDEVFKSNLVCAF +IVLLFITAIQSLLPSSRVMPMTIQFSILIMLHSALVLITTAEDYKCLPLILRKTCCWINETYLARNVIIFASILINFLGA +ILNILWCDFDKSIPLKNLTFNSSAVFTDICSYPEYFVFTGVLAMVTCAVFLRLNSVLKLAVLLIMIAIYALLTETVYAGL +FLRYDNLNHSGEDFLGTKEVSLLLMAMFLLAVFYHGQQLEYTARLDFLWRVQAKEEINEMKELREHNENMLRNILPSHVA +RHFLEKDRDNEELYSQSYDAVGVMFASIPGFADFYSQTEMNNQGVECLRLLNEIIADFDELLGEDRFQDIEKIKTIGSTY +MAVSGLSPEKQQCEDKWGHLCALADFSLALTESIQEINKHSFNNFELRIGISHGSVVAGVIGAKKPQYDIWGKTVNLASR +MDSTGVSGRIQVPEETYLILKDQGFAFDYRGEIYVKGISEQEGKIKTYFLLGRVQPNPFILPPRRLPGQYSLAAVVLGLV +QSLNRQRQKQLLNENNNTGIIKGHYNRRTLLSPSGTEPGAQAEGTDKSDLP +>143 +MVMGIFANCIFCLKVKYLPQQQKKKLQTDIKENGGKFSFSLNPQCTHIILDNADVLSQYQLNSIQKNHVHIANPDFIWKS +IREKRLLDVKNYDPYKPLDITPPPDQKASSSEVKTEGLCPDSATEEEDTVELTEFGMQNVEIPHLPQDFEVAKYNTLEKV +GMEGGQEAVVVELQCSRDSRDCPFLISSHFLLDDGMETRRQFAIKKTSEDASEYFENYIEELKKQGFLLREHFTPEATQL +ASEQLQALLLEEVMNSSTLSQEVSDLVEMIWAEALGHLEHMLLKPVNRISLNDVSKAEGILLLVKAALKNGETAEQLQKM +MTEFYRLIPHKGTMPKEVNLGLLAKKADLCQLIRDMVNVCETNLSKPNPPSLAKYRALRCKIEHVEQNTEEFLRVRKEVL +QNHHSKSPVDVLQIFRVGRVNETTEFLSKLGNVRPLLHGSPVQNIVGILCRGLLLPKVVEDRGVQRTDVGNLGSGIYFSD +SLSTSIKYSHPGETDGTRLLLICDVALGKCMDLHEKDFSLTEAPPGYDSVHGVSQTASVTTDFEDDEFVVYKTNQVKMKY +IIKFSMPGDQIKDFHPSDHTELEEYRPEFSNFSKVEDYQLPDAKTSSSTKAGLQDASGNLVPLEDVHIKGRIIDTVAQVI +VFQTYTNKSHVPIEAKYIFPLDDKAAVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDVFTVSVGN +LPPKAKVLIKITYITELSILGTVGVFFMPATVAPWQQDKALNENLQDTVEKICIKEIGTKQSFSLTMSIEMPYVIEFIFS +DTHELKQKRTDCKAVISTMEGSSLDSSGFSLHIGLSAAYLPRMWVEKHPEKESEACMLVFQPDLDVDLPDLASESEVIIC +LDCSSSMEGVTFLQAKQIALHALSLVGEKQKVNIIQFGTGYKELFSYPKHITSNTMAAEFIMSATPTMGNTDFWKTLRYL +SLLYPARGSRNILLVSDGHLQDESLTLQLVKRSRPHTRLFACGIGSTANRHVLRILSQCGAGVFEYFNAKSKHSWRKQIE +DQMTRLCSPSCHSVSVKWQQLNPDVPEALQAPAQVPSLFLNDRLLVYGFIPHCTQATLCALIQEKEFRTMVSTTELQKTT +GTMIHKLAARALIRDYEDGILHENETSHEMKKQTLKSLIIKLSKENSLITQFTSFVAVEKRDENESPFPDIPKVSELIAK +EDVDFLPYMSWQGEPQEAVRNQSLLASSEWPELRLSKRKHRKIPFSKRKMELSQPEVSEDFEEDGLGVLPAFTSNLERGG +VEKLLDLSWTESCKPTATEPLFKKVSPWETSTSSFFPILAPAVGSYLPPTARAHSPASLSFASYRQVASFGSAAPPRQFD +ASQFSQGPVPGTCADWIPQSASCPTGPPQNPPSSPYCGIVFSGSSLSSAQSAPLQHPGGFTTRPSAGTFPELDSPQLHFS +LPTDPDPIRGFGSYHPSASSPFHFQPSAASLTANLRLPMASALPEALCSQSRTTPVDLCLLEESVGSLEGSRCPVFAFQS +SDTESDELSEVLQDSCFLQIKCDTKDDSILCFLEVKEEDEIVCIQHWQDAVPWTELLSLQTEDGFWKLTPELGLILNLNT +NGLHSFLKQKGIQSLGVKGRECLLDLIATMLVLQFIRTRLEKEGIVFKSLMKMDDASISRNIPWAFEAIKQASEWVRRTE +GQYPSICPRLELGNDWDSATKQLLGLQPISTVSPLHRVLHYSQG +>213 +MKWVTFISLLFLFSSAYSRGVFRRDAHKSEVAHRFKDLGEENFKALVLIAFAQYLQQCPFEDHVKLVNEVTEFAKTCVAD +ESAENCDKSLHTLFGDKLCTVATLRETYGEMADCCAKQEPERNECFLQHKDDNPNLPRLVRPEVDVMCTAFHDNEETFLK +KYLYEIARRHPYFYAPELLFFAKRYKAAFTECCQAADKAACLLPKLDELRDEGKASSAKQRLKCASLQKFGERAFKAWAV +ARLSQRFPKAEFAEVSKLVTDLTKVHTECCHGDLLECADDRADLAKYICENQDSISSKLKECCEKPLLEKSHCIAEVEND +EMPADLPSLAADFVESKDVCKNYAEAKDVFLGMFLYEYARRHPDYSVVLLLRLAKTYETTLEKCCAAADPHECYAKVFDE +FKPLVEEPQNLIKQNCELFEQLGEYKFQNALLVRYTKKVPQVSTPTLVEVSRNLGKVGSKCCKHPEAKRMPCAEDYLSVV +LNQLCVLHEKTPVSDRVTKCCTESLVNRRPCFSALEVDETYVPKEFNAETFTFHADICTLSEKERQIKKQTALVELVKHK +PKATKEQLKAVMDDFAAFVEKCCKADDKETCFAEEGKKLVAASQAALGL +>230 +MPHSYPALSAEQKKELSDIALRIVAPGKGILAADESVGSMAKRLSQIGVENTEENRRLYRQVLFSADDRVKKCIGGVIFF +HETLYQKDDNGVPFVRTIQDKGIVVGIKVDKGVVPLAGTDGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKISERTPS +ALAILENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHVYLEGTLLKPNMVTPGHAC +PIKYTPEEIAMATVTALRRTVPPAVPGVTFLSGGQSEEEASFNLNAINRCPLPRPWALTFSYGRALQASALNAWRGQRDN +AGAATEEFIKRAEVNGLAAQGKYEGSGEDGGAAAQSLYIANHAY +>231 +MASRLLLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLW +CTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGIS +NFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAK +HNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALLSCTSHKDYPFHEEF +>242 +MATYKVRVATGTDLLSGTRDSISLTIVGTQGESHKQLLNHFGRDFATGAVGQYTVQCPQDLGELIIIRLHKERYAFFPKD +PWYCNYVQICAPNGRIYHFPAYQWMDGYETLALREATGKTTADDSLPVLLEHRKEEIRAKQDFYHWRVFLPGLPSYVHIP +SYRPPVRRHRNPNRPEWNGYIPGFPILINFKATKFLNLNLRYSFLKTASFFVRLGPMALAFKVRGLLDCKHSWKRLKDIR +KIFPGKKSVVSEYVAEHWAEDTFFGYQYLNGVNPGLIRRCTRIPDKFPVTDDMVAPFLGEGTCLQAELEKGNIYLADYRI +MEGIPTVELSGRKQHHCAPLCLLHFGPEGKMMPIAIQLSQTPGPDCPIFLPSDSEWDWLLAKTWVRYAEFYSHEAIAHLL +ETHLIAEAFCLALLRNLPMCHPLYKLLIPHTRYTVQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLY +LPNDFVERGVQDLPGYYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTV +PELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMRNPPIQTKGLTTLETFMDTLPDVKTTCITLLVLWTLSREPD +DRRPLGHFPDIHFVEEAPRRSIEAFRQRLNQISHDIRQRNKCLPIPYYYLDPVLIENSISI +>DECOY_12 +AQKPNTVKSMFFINQTDTPVIIMLFPRNFRVITRTEVLASLLTIKVATAASAETGEEFVDLVAKHVVQSVALNRAGTIGS +LDAKSTFAEEIGLQLLIDNLNYDRSISFKPLYLEGIERFELSDRWRKLTEPLLMAEVEEMKDQDPLIFLASANGTYKLEV +VTCSLEEDRFYPITLHHLSMMPVMVWKKKSLYFRSQHTDQPDFPMEWKAKFFIYNVLVMMTQSDLDKILDTIKGRTGNKV +YDNILKKAAASDQFDTAFAESGYLRKADETFRDLLSLQEKVFMANGMSLQLEDSSQNLTRLLHQFSQHIEAESTETLNFK +LGKLIETLTTNHAGLSLFALATSISLPSFIVNKDPAKLVLQKYLSFAFDVNASALGLDVHTGRDQNEQTLNEEDLPSNPH +CLVAPCFGAALLGLALLPLMREM +>DECOY_18 +KFDALIDSFINLFLHAHHDRFVLTPRFRISKDGCGGLVVGKNRAILILKNRISDDPTDFSCFTGRGRVRSIFQPYRAQLD +LLGTLLAKGAHAANNLLDERKIINIVEALLLNKSPDGLWTNFIRYPANPRFEEKHFFGGTMMKKSFTMVDAPDDLGWHEH +AWFKGTCGGGTQVEDVLFACGHKRAIDRLKRFFDDSAHNDGGESQIPEVIIGAVTKKKKRYKVILDEVEELCRAEEQQNE +KVFEELPYKLRPFPAIPWDFSPIDIKHIAKSHTTALCGMTRGHFAGMFSLISYDPCGPAQNIMCTELEEQSFGRQGREKS +RYWMFITKLANENSCSGCAMTILQSMGKPAVSLLSQRLKEVFNEPPLIGLAPRNVFMSANQPQQILKLLAPHSYGIPVSS +IQSYLDLMRNGDVDVLYNGRSEEYNCFFHVAEANQIINLQKMLEQSRPGPVETKMLPGDYDFEVDVKAAAQSIHRSGPVL +LRYSHQFSCALRQALLMSAM +>DECOY_88 +LDSEGYLASSFAAYDLAGPVSGPGSYAPMRKICYQAQDPPLERRLEEALIYPKDSALIRFSAIVQEATDTDATERTMFDI +FSQFTVTGQGNPDVLTMIRAFEAEGLDYGMSILCARFDEHDMLGNKRRDFHNFSARFENMQEQTIGKADRTLIQTEVENI +TRAITTLLLEWGVRIHEMTYNTHKNDFVLAEQILQHDGELKDINNKYNIINHEYQKLQNMQDELAGTIQISSRAIEEMKN +QIWPGIANAQAAFQRRLRENAHQRALEEQLSQDRIPVLQKVKDWKTRLEDMTVTSYPNSSSIRINYSQIVKEVENQIAMI +SQREGDAEPLTAKFQEHATILSQIEEISHVIFMDQLDEMAGEMWNNFPAARKAFELHLQDITELLKEMRELAERRKQTLT +GLRDWQDCIKQCRDNVNVADHYDLENLEQAIAAIQEVRDQHAALDSEFAEHKRLLARVETLSASEYDKQLLIQEKGYAWT +EHTSAKQRFKEALHELRELRRIENLLWEEYGKEAQELRQWAGAIDSVMKGESPMFAPRNSIRLKTQLTNFNIELQCKEQV +KPPKHKRRYDRFDELKKQMAQMTKEPTRNELWPITRRIWELLESALREYEEMLRENEQNVALVKCIRNAATEAQEAGAFA +HYFCSVYTMIAREDPKPTNVIDEADLMKPIDLHKEAIEMALNINGIPDDKNLKSYDILDPRHRHILACLGLGDKWSTHFN +QINVNRYPATKRQCWLLLGEKASTEEVSIDQIAFRLIITWIMGLTMKVNGDVIEEAGISVLKVGKSAIYDLAKNVNAIKH +FRMKGRDPKPLREGSIVELLLMLKLGNRFDEEINEIQTGAKRLHSNCWATFTKRQQKEWAPDLLLDRDWEEEQIMYEDED +YVYNYQVGPEIQNM +>DECOY_112 +SSPGGNLFYTTMEGKGKVKVVGRCELQYGKAALVQYLDTTVQIRDPVGTSDMRSSVNVTNGWIDYQPKRAGIVGAVVPGM +NLGIKMQFNNFSHENIHKMQEMLRMAYDALATIHSRGVQDYTSANLGSAAMYTSGITKIKELQRFREESIIEDFDAIIEN +LLRLCEVGENNAELEVYFESFNAISAFMVAVCECSQYYLEDNRRERALFHAAVDKPLINHLLRRNYAQLEEMEEKEGTAQ +LKWLFDLRATSEVQQAHLYLALAFVLLIVPTMYKLAVRGAAPCDLGDFTENSSALGHVGLLLDYNDFITAPPGLLLLVLY +ILGLVFIMALKGISSIHLFVSSALLSLLMNGIFYEPFSCTPMTGECLPADLGLSYNLQQLHCATIDAPTLNLMRAACSRI +PTHNCTFMNAIASTFVLLVSFIGVATSHARSRVISRSLRQLAKPFLSGCSYVACILVTILLLLFISAYIGLMLTSHPFIL +LQIFCIFCFVLLACAVYAGFRPDVKRSYKKELDERQFTLLFRRVHDKRLQDISRADIARSLFEDVEDEPNLADQTGRNDK +SSDDIGMQRFAKSDKTRSFARDPVWRPMLGEMSNARTRQLKALMAKEEKRKQSAGLILFTEIHQEKLYANREGGRGPEVE +YDGNLYQLTARTIHIRGARGGAEMHNALTVDNSWVDFQWKRLGLVGCHVRGSHIGVRMNVNVGTVERVLSIAEIMDVGME +VCCHAHDARAEPLGSVCYYCDGLIKIRLCHNEAALKDFRAFLENLTMVLEQATCQSALSTFGEIDAFLISVNDHKQIYIK +HFMMDEKKTNIDEKMEMAVHQPLVSLLLREQQRNEHQLHLRAQIYGRTEQFAQRQSVEAPYHTCIGIVNTCLFLLVNAGL +QKWLFADGRNLQWALILHLTSLGLGSLVAARMRIPLLTYAIYVFFVPCWLGASPSRPDAALAGGVQVAALIGLVVYSVVW +MSDQRFSHRNCVVMLGVFLAAACALLAVYAPQPRAPAAHFALLVATLLVLVAMLLTLSSQNMQFFYRQYLRELKASRFQK +SQFVQVLRRWCSRGSRPVADPAVEATGGATTTVETDEFGLAVARLGLEKGKGPGGRRIFADDQWPCRPPGAPTPSPPEAD +RLCSMYRPTCFGGARTGRRRSRKQGNREGWATKREDVKPVLLGSFWSM +>DECOY_114 +PLDSKDTGEAQAGPETGSPSLLTRRNYHGKIIGTNNNENLLQKQRQRNLSQVLGLVVAALSYQGPLRRPPLIFPNPQVRG +LLFYTKIKGEQESIGKVYIEGRYDFAFGQDKLILYTEEPVQIRGSVGTSDMRSALNVTKGWIDYQPKKAGIVGAVVSGHS +IGIRLEFNNFSHKNIEQISETLALSFDALACLHGWKDECQQKEPSLGSVAMYTSGITKIKEIDQFRDEGLLEDFDAIIEN +LLRLCEVGQNNMETQSYFDAFGPISAFMVGVADYSQSYLEENDRDKELFHRAVHSPLINRLMNENHERLEKMENIEEKAQ +VRWLFDLRATYELQQGHYFVALLFMAMLLLSVEKTGLFDEGSHNLNDYRLFLGAYVTETLLAYIAIMILLVALKLVSNLR +LFVACTVMALVGTFVFYEPYSCIDTFVASSNFTLNKLPISKDFDCWLINLIAGLFNILISAFIIVNRALYTENIWCCTKR +LILPLCKYDEATTILVLASHLMILISFQITMPMVRSSPLLSQIATIFLLVIFACVLNSKFVEDRMQSYKHELSSDKFMLS +FPKIHERRLKDGSRLDITHEIRKNIEEPGSQVHLAQALHNPLLNISNRTLAALTNQKGVINDFPLEPSWSGETFTAGSNR +RDSSSVSEKVIDEPLSLLSDEPQKILYTEINHKRLFENREKGHGEEVNYDGNLCDLTAKSIHIRGPIGGSELKNAIDVDW +SWVDFQWKRLGLVGCLVSGSHIGIRMDVDHKTRSRVYRITKIMSLGMEVCCHAHDQRPEPLGSVCYYCDGLIKIRLCHHE +HALRDFRAFLENLMRVLEQASLTTSLNTFGKVDAFLISVNEYRHIYIRHFQHQLHEDEVNTMDNIMELVVFRPLVSLVLR +EQRQNETELRLRAEVCRRTELFAQRQARDSLYSIFIGATNMCMFLVAQAVVQNISIVALRPIVVQLIVQLLSTGLGALIA +WTLPLPLMSYTAFLTFLVYGIGDGLLGYGLGAALIQTTMAVWTVVGSYQLYTHSTTDKRVVVLACIVVEIGTFFGLLIGK +LPDMPASALSLHLVLLTLKTLVDLVNMVVESKRRQGLFYRQYLRELDRSKFSNRLTPFIVGRYSYGGNLFFDSNSPACDL +HLFGLDGGGGSGSASGSGSREPFVKTGCTSHAREGPGLSYLPLASDGSLQPAHHNPGGGAPDSAKGSGGSGSGSGGRHGH +IFRQETIHRVATQWLLRQPRSASRGDGAPPTPHITYLEESGTLCRVDSLEM +>DECOY_143 +GQSYHLVRHLPSVTSIPQLGLLQKTASDWDNGLELRPCISPYQGETRRVWESAQKIAEFAWPINRSISADDMKMLSKFVI +GEKELRTRIFQLVLMTAILDLLCERGKVGLSQIGKQKLFSHLGNTNLNLILGLEPTLKWFGDETQLSLLETWPVADQWHQ +ICVIEDEEKVELFCLISDDKTDCKIQLFCSDQLVESLEDSETDSSQFAFVPCRSGELSGVSEELLCLDVPTTRSQSCLAE +PLASAMPLRLNATLSAASPQFHFPSSASPHYSGFGRIPDPDTPLSFHLQPSDLEPFTGASPRTTFGGPHQLPASQASSLS +SGSFVIGCYPSSPPNQPPGTPCSASQPIWDACTGPVPGQSFQSADFQRPPAASGFSAVQRYSAFSLSAPSHARATPPLYS +GVAPALIPFFSSTSTEWPSVKKFLPETATPKCSETWSLDLLKEVGGRELNSTFAPLVGLGDEEFDESVEPQSLEMKRKSF +PIKRHKRKSLRLEPWESSALLSQNRVAEQPEGQWSMYPLFDVDEKAILESVKPIDPFPSENEDRKEVAVFSTFQTILSNE +KSLKIILSKLTQKKMEHSTENEHLIGDEYDRILARAALKHIMTGTTKQLETTSVMTRFEKEQILACLTAQTCHPIFGYVL +LRDNLFLSPVQAPAQLAEPVDPNLQQWKVSVSHCSPSCLRTMQDEIQKRWSHKSKANFYEFVGAGCQSLIRLVHRNATSG +IGCAFLRTHPRSRKVLQLTLSEDQLHGDSVLLINRSGRAPYLLSLYRLTKWFDTNGMTPTASMIFEAAMTNSTIHKPYSF +LEKYGTGFQIINVKQKEGVLSLAHLAIQKAQLFTVGEMSSSCDLCIIVESESALDPLDVDLDPQFVLMCAESEKEPHKEV +WMRPLYAASLGIHLSFGSSDLSSGEMTSIVAKCDTRKQKLEHTDSFIFEIVYPMEISMTLSFSQKTGIEKICIKEVTDQL +NENLAKDQQWPAVTAPMFFVGVTGLISLETIYTIKILVKAKPPLNGVSVTFVDPADQSMLYAGHGQTVAELYEQQAEEKE +KIEGVIHKGNIFAEFGCVAAKDDLPFIYKAEIPVHSKNTYTQFVIVQAVTDIIRGKIHVDELPVLNGSADQLGAKTSSST +KADPLQYDEVKSFNSFEPRYEELETHDSPHFDKIQDGPMSFKIIYKMKVQNTKYVVFEDDEFDTTVSATQSVGHVSDYGP +PAETLSFDKEHLDMCKGLAVDCILLLRTGDTEGPHSYKISTSLSDSFYIGSGLNGVDTRQVGRDEVVKPLLLGRCLIGVI +NQVPSGHLLPRVNGLKSLFETTENVRGVRFIQLVDVPSKSHHNQLVEKRVRLFEETNQEVHEIKCRLARYKALSPPNPKS +LNTECVNVMDRILQCLDAKKALLGLNVEKPMTGKHPILRYFETMMKQLQEATEGNKLAAKVLLLIGEAKSVDNLSIRNVP +KLLMHELHGLAEAWIMEVLDSVEQSLTSSNMVEELLLAQLQESALQTAEPTFHERLLFGQKKLEEIYNEFYESADESTKK +IAFQRRTEMGDDLLFHSSILFPCDRSDRSCQLEVVVAEQGGEMGVKELTNYKAVEFDQPLHPIEVNQMGFETLEVTDEEE +TASDPCLGETKVESSSAKQDPPPTIDLPKYPDYNKVDLLRKERISKWIFDPNAIHVHNKQISNLQYQSLVDANDLIIHTC +QPNLSFSFKGGNEKIDTQLKKKQQQPLYKVKLCFICNAFIGMVM +>DECOY_213 +LGLAAQSAAVLKKGEEAFCTEKDDAKCCKEVFAAFDDMVAKLQEKTAKPKHKVLEVLATQKKIQREKESLTCIDAHFTFT +EANFEKPVYTEDVELASFCPRRNVLSETCCKTVRDSVPTKEHLVCLQNLVVSLYDEACPMRKAEPHKCCKSGVKGLNRSV +EVLTPTSVQPVKKTYRVLLANQFKYEGLQEFLECNQKILNQPEEVLPKFEDFVKAYCEHPDAAACCKELTTEYTKALRLL +LVVSYDPHRRAYEYLFMGLFVDKAEAYNKCVDKSEVFDAALSPLDAPMEDNEVEAICHSKELLPKECCEKLKSSISDQNE +CIYKALDARDDACELLDGHCCETHVKTLDTVLKSVEAFEAKPFRQSLRAVAWAKFAREGFKQLSACKLRQKASSAKGEDR +LEDLKPLLCAAKDAAQCCETFAAKYRKAFFLLEPAYFYPHRRAIEYLYKKLFTEENDHFATCMVDVEPRVLRPLNPNDDK +HQLFCENREPEQKACCDAMEGYTERLTAVTCLKDGFLTHLSKDCNEASEDAVCTKAFETVENVLKVHDEFPCQQLYQAFA +ILVLAKFNEEGLDKFRHAVESKHADRRFVGRSYASSFLFLLSIFTVWKM +>DECOY_230 +YAHNAIYLSQAAAGGDEGSGEYKGQAALGNVEARKIFEETAAGANDRQGRWANLASAQLARGYSFTLAWPRPLPCRNIAN +LNFSAEEESQGGSLFTVGPVAPPVTRRLATVTAMAIEEPTYKIPCAHGPTVMNPKLLTGELYVHHDSLAKYVAALVKETV +YQCRKLDHDGDPLIEPEVIPVIGNQQCISAYRALVNANELIALASPTRESIKLVCRWKAFDAGDKKYQACRESLGDLGQT +TTEGDTGALPVVGKDVKIGVVIGKDQITRVFPVGNDDKQYLTEHFFIVGGICKKVRDDASFLVQRYLRRNEETNEVGIQS +LRKAMSGVSEDAALIGKGPAVIRLAIDSLEKKQEASLAPYSHPM +>DECOY_231 +FEEHFPYDKHSTCSLLACVRWNRNYSLLTTMDQSSLEFDFVKFNEAIREPTVSKPIVVLNRQMPFRILVQATTKNHKAAI +AKIRPDELLSPDEPKAWPRDPSGLPSYATVVIGKSQCYQILKEQTLYPHCEIQNVAPKYKLGPKNLIMEVQLHNFNSIGI +AKVLGEDVLEEMAAWTDLINTDSPVVNGSEDLPFFEKGPKFGTPWHILYLDLYDLKLDSLTKQCAGKVLGKEHYTCWLKS +VIFLEERKVVQERLKEQIAVGVENENQYVHACDIHRYGVDIAVKVAETVQGPPSKWTGLGLIPMKAGNNLLLRSAM +>DECOY_242 +ISISNEILVPDLYYYPIPLCKNRQRIDHSIQNLRQRFAEISRRPAEEVFHIDPFHGLPRRDDPERSLTWLVLLTICTTKV +DPLTDMFTELTTLGKTQIPPNRMSAPFNPMWATFEMQGTNVAAHKASCTYIVITVYRILEPVTRLCRPFGSSERGLLCEK +FIEQVWSQLEPDGEVAADSPYYYTIIETVYKELANWVALSDDRYYYGPLDQVGREVFDNPLYLSDYTLESLARVMVGAFG +EVGLSMGKASLGGENLLVARGISNIQVTYRTHPILLKYLPHCMPLNRLLALCFAEAILHTELLHAIAEHSYFEAYRVWTK +ALLWDWESDSPLFIPCDPGPTQSLQIAIPMMKGEPGFHLLCLPACHHQKRGSLEVTPIGEMIRYDALYINGKELEAQLCT +GEGLFPAVMDDTVPFKDPIRTCRRILGPNVGNLYQYGFFTDEAWHEAVYESVVSKKGPFIKRIDKLRKWSHKCDLLGRVK +FALAMPGLRVFFSATKLFSYRLNLNLFKTAKFNILIPFGPIYGNWEPRNPNRHRRVPPRYSPIHVYSPLGPLFVRWHYFD +QKARIEEKRHELLVPLSDDATTKGTAERLALTEYGDMWQYAPFHYIRGNPACIQVYNCYWPDKPFFAYREKHLRIIILEG +LDQPCQVTYQGVAGTAFDRGFHNLLQKHSEGQTGVITLSISDRTGSLLDTGTAVRVKYTAM
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool.conf Wed Mar 01 12:53:06 2017 -0500 @@ -0,0 +1,162 @@ +<?xml version='1.0' encoding='UTF-8'?> +<toolbox> + <section id="section-id-Peptidepropertyprediction" name="Peptide property prediction"> + <tool file="openms/PTModel.xml"/> + <tool file="openms/PTPredict.xml"/> + <tool file="openms/RTModel.xml"/> + <tool file="openms/RTPredict.xml"/> + </section> + <section id="section-id-DEFAULT" name="DEFAULT"> + <tool file="openms/OpenSwathFileSplitter.xml"/> + <tool file="openms/OpenSwathMzMLFileCacher.xml"/> + </section> + <section id="section-id-TargetedExperiments" name="Targeted Experiments"> + <tool file="openms/ConvertTraMLToTSV.xml"/> + <tool file="openms/ConvertTSVToTraML.xml"/> + <tool file="openms/InclusionExclusionListCreator.xml"/> + <tool file="openms/MRMMapper.xml"/> + <tool file="openms/OpenSwathAnalyzer.xml"/> + <tool file="openms/OpenSwathAssayGenerator.xml"/> + <tool file="openms/OpenSwathChromatogramExtractor.xml"/> + <tool file="openms/OpenSwathConfidenceScoring.xml"/> + <tool file="openms/OpenSwathDecoyGenerator.xml"/> + <tool file="openms/OpenSwathDIAPreScoring.xml"/> + <tool file="openms/OpenSwathFeatureXMLToTSV.xml"/> + <tool file="openms/OpenSwathRewriteToFeatureXML.xml"/> + <tool file="openms/OpenSwathRTNormalizer.xml"/> + <tool file="openms/PrecursorIonSelector.xml"/> + </section> + <section id="section-id-Utilities" name="Utilities"> + <tool file="openms/AccurateMassSearch.xml"/> + <tool file="openms/CVInspector.xml"/> + <tool file="openms/DecoyDatabase.xml"/> + <tool file="openms/DeMeanderize.xml"/> + <tool file="openms/Digestor.xml"/> + <tool file="openms/DigestorMotif.xml"/> + <tool file="openms/ERPairFinder.xml"/> + <tool file="openms/FFEval.xml"/> + <tool file="openms/FuzzyDiff.xml"/> + <tool file="openms/IDDecoyProbability.xml"/> + <tool file="openms/IDExtractor.xml"/> + <tool file="openms/IDMassAccuracy.xml"/> + <tool file="openms/IDScoreSwitcher.xml"/> + <tool file="openms/IDSplitter.xml"/> + <tool file="openms/LabeledEval.xml"/> + <tool file="openms/LowMemPeakPickerHiRes.xml"/> + <tool file="openms/LowMemPeakPickerHiRes_RandomAccess.xml"/> + <tool file="openms/MapAlignmentEvaluation.xml"/> + <tool file="openms/MassCalculator.xml"/> + <tool file="openms/MetaboliteSpectralMatcher.xml"/> + <tool file="openms/MetaProSIP.xml"/> + <tool file="openms/MRMPairFinder.xml"/> + <tool file="openms/MRMTransitionGroupPicker.xml"/> + <tool file="openms/MSSimulator.xml"/> + <tool file="openms/MultiplexResolver.xml"/> + <tool file="openms/MzMLSplitter.xml"/> + <tool file="openms/OpenSwathWorkflow.xml"/> + <tool file="openms/QCCalculator.xml"/> + <tool file="openms/QCEmbedder.xml"/> + <tool file="openms/QCExporter.xml"/> + <tool file="openms/QCExtractor.xml"/> + <tool file="openms/QCImporter.xml"/> + <tool file="openms/QCMerger.xml"/> + <tool file="openms/QCShrinker.xml"/> + <tool file="openms/RNPxl.xml"/> + <tool file="openms/RNPxlXICFilter.xml"/> + <tool file="openms/RTEvaluation.xml"/> + <tool file="openms/SemanticValidator.xml"/> + <tool file="openms/SequenceCoverageCalculator.xml"/> + <tool file="openms/SimpleSearchEngine.xml"/> + <tool file="openms/SpecLibCreator.xml"/> + <tool file="openms/SvmTheoreticalSpectrumGeneratorTrainer.xml"/> + <tool file="openms/TICCalculator.xml"/> + <tool file="openms/TopPerc.xml"/> + <tool file="openms/TransformationEvaluation.xml"/> + <tool file="openms/XMLValidator.xml"/> + </section> + <section id="section-id-MapAlignment" name="Map Alignment"> + <tool file="openms/ConsensusMapNormalizer.xml"/> + <tool file="openms/FeatureLinkerLabeled.xml"/> + <tool file="openms/FeatureLinkerUnlabeled.xml"/> + <tool file="openms/FeatureLinkerUnlabeledQT.xml"/> + <tool file="openms/MapRTTransformer.xml"/> + </section> + <section id="section-id-IDProcessing" name="ID Processing"> + <tool file="openms/ConsensusID.xml"/> + <tool file="openms/FalseDiscoveryRate.xml"/> + <tool file="openms/FidoAdapter.xml"/> + <tool file="openms/IDConflictResolver.xml"/> + <tool file="openms/IDFileConverter.xml"/> + <tool file="openms/IDFilter.xml"/> + <tool file="openms/IDMapper.xml"/> + <tool file="openms/IDPosteriorErrorProbability.xml"/> + <tool file="openms/IDRTCalibration.xml"/> + <tool file="openms/LuciphorAdapter.xml"/> + <tool file="openms/PeptideIndexer.xml"/> + <tool file="openms/PhosphoScoring.xml"/> + </section> + <section id="section-id-Signalprocessingandpreprocessing" name="Signal processing and preprocessing"> + <tool file="openms/BaselineFilter.xml"/> + <tool file="openms/ExternalCalibration.xml"/> + <tool file="openms/HighResPrecursorMassCorrector.xml"/> + <tool file="openms/InternalCalibration.xml"/> + <tool file="openms/MapNormalizer.xml"/> + <tool file="openms/MassTraceExtractor.xml"/> + <tool file="openms/NoiseFilterGaussian.xml"/> + <tool file="openms/NoiseFilterSGolay.xml"/> + <tool file="openms/PeakPickerHiRes.xml"/> + <tool file="openms/PeakPickerIterative.xml"/> + <tool file="openms/PeakPickerWavelet.xml"/> + <tool file="openms/PrecursorMassCorrector.xml"/> + <tool file="openms/SpectraMerger.xml"/> + <tool file="openms/TOFCalibration.xml"/> + </section> + <section id="section-id-Identification" name="Identification"> + <tool file="openms/CompNovoCID.xml"/> + <tool file="openms/CompNovo.xml"/> + <tool file="openms/InspectAdapter.xml"/> + <tool file="openms/MascotAdapter.xml"/> + <tool file="openms/MascotAdapterOnline.xml"/> + <tool file="openms/MSGFPlusAdapter.xml"/> + <tool file="openms/ProteinInference.xml"/> + <tool file="openms/SpectraFilterBernNorm.xml"/> + <tool file="openms/SpectraFilterMarkerMower.xml"/> + <tool file="openms/SpectraFilterNLargest.xml"/> + <tool file="openms/SpectraFilterNormalizer.xml"/> + <tool file="openms/SpectraFilterParentPeakMower.xml"/> + <tool file="openms/SpectraFilterScaler.xml"/> + <tool file="openms/SpectraFilterSqrtMower.xml"/> + <tool file="openms/SpectraFilterThresholdMower.xml"/> + <tool file="openms/SpectraFilterWindowMower.xml"/> + <tool file="openms/XTandemAdapter.xml"/> + </section> + <section id="section-id-FileHandling" name="File Handling"> + <tool file="openms/DTAExtractor.xml"/> + <tool file="openms/FileConverter.xml"/> + <tool file="openms/FileFilter.xml"/> + <tool file="openms/FileInfo.xml"/> + <tool file="openms/FileMerger.xml"/> + <tool file="openms/IDMerger.xml"/> + <tool file="openms/IDRipper.xml"/> + <tool file="openms/MapStatistics.xml"/> + <tool file="openms/MzTabExporter.xml"/> + <tool file="openms/TextExporter.xml"/> + </section> + <section id="section-id-Quantitation" name="Quantitation"> + <tool file="openms/AdditiveSeries.xml"/> + <tool file="openms/Decharger.xml"/> + <tool file="openms/EICExtractor.xml"/> + <tool file="openms/FeatureFinderCentroided.xml"/> + <tool file="openms/FeatureFinderIdentification.xml"/> + <tool file="openms/FeatureFinderIsotopeWavelet.xml"/> + <tool file="openms/FeatureFinderMetabo.xml"/> + <tool file="openms/FeatureFinderMRM.xml"/> + <tool file="openms/FeatureFinderMultiplex.xml"/> + <tool file="openms/FeatureFinderSuperHirn.xml"/> + <tool file="openms/IsobaricAnalyzer.xml"/> + <tool file="openms/ITRAQAnalyzer.xml"/> + <tool file="openms/ProteinQuantifier.xml"/> + <tool file="openms/ProteinResolver.xml"/> + <tool file="openms/TMTAnalyzer.xml"/> + </section> +</toolbox>