comparison MzMLSplitter.xml @ 0:60b83eb38cd4 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 12:39:14 -0500
parents
children 91c81530303d
comparison
equal deleted inserted replaced
-1:000000000000 0:60b83eb38cd4
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="MzMLSplitter" name="MzMLSplitter" version="2.1.0">
5 <description>Splits an mzML file into multiple parts</description>
6 <macros>
7 <token name="@EXECUTABLE@">MzMLSplitter</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>MzMLSplitter
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_out:
19 -out "$param_out"
20 #end if
21 #if $param_parts:
22 -parts $param_parts
23 #end if
24 #if $param_size:
25 -size $param_size
26 #end if
27 #if $param_unit:
28 -unit $param_unit
29 #end if
30 #if $param_no_chrom:
31 -no_chrom
32 #end if
33 #if $param_no_spec:
34 -no_spec
35 #end if
36 #if $adv_opts.adv_opts_selector=='advanced':
37 #if $adv_opts.param_force:
38 -force
39 #end if
40 #end if
41 &gt; $param_stdout
42 </command>
43 <inputs>
44 <param name="param_in" type="data" format="mzml" optional="False" label="Input file" help="(-in) "/>
45 <param name="param_out" type="text" size="30" label="Prefix for output files ('_part1of2.mzML' etc" help="(-out) will be appended; default: same as 'in' without the file extension)">
46 <sanitizer>
47 <valid initial="string.printable">
48 <remove value="'"/>
49 <remove value="&quot;"/>
50 </valid>
51 </sanitizer>
52 </param>
53 <param name="param_parts" type="integer" min="1" optional="True" value="1" label="Number of parts to split into (takes precedence over 'size' if set)" help="(-parts) "/>
54 <param name="param_size" type="integer" min="0" optional="True" value="0" label="Approximate upper limit for resulting file sizes (in 'unit')" help="(-size) "/>
55 <param name="param_unit" display="radio" type="select" optional="False" value="MB" label="Unit for 'size' (base 1024)" help="(-unit) ">
56 <option value="KB">KB</option>
57 <option value="MB" selected="true">MB</option>
58 <option value="GB">GB</option>
59 </param>
60 <param name="param_no_chrom" display="radio" type="boolean" truevalue="-no_chrom" falsevalue="" checked="false" optional="True" label="Remove chromatograms, keep only spectra" help="(-no_chrom) "/>
61 <param name="param_no_spec" display="radio" type="boolean" truevalue="-no_spec" falsevalue="" checked="false" optional="True" label="Remove spectra, keep only chromatograms" help="(-no_spec) "/>
62 <expand macro="advanced_options">
63 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
64 </expand>
65 </inputs>
66 <outputs>
67 <data name="param_stdout" format="text" label="Output from stdout"/>
68 </outputs>
69 <help>Splits an mzML file into multiple parts
70
71
72 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MzMLSplitter.html</help>
73 </tool>