Mercurial > repos > galaxyp > openms_novoradapter
comparison macros_test.xml @ 4:031adfb7fce0 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms"
| author | galaxyp |
|---|---|
| date | Mon, 14 Dec 2020 16:52:37 +0000 |
| parents | 16fcd0ea9937 |
| children |
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| 3:846eea397eba | 4:031adfb7fce0 |
|---|---|
| 333 <param name="in" ftype="mzml" value="spectra.mzML"/> | 333 <param name="in" ftype="mzml" value="spectra.mzML"/> |
| 334 <param name="id" ftype="idxml" value="MSGFPlusAdapter_1_out1.tmp"/> | 334 <param name="id" ftype="idxml" value="MSGFPlusAdapter_1_out1.tmp"/> |
| 335 <output name="out" ftype="idxml" value="PhosphoScoring.idxml" compare="sim_size" delta="5700"/> | 335 <output name="out" ftype="idxml" value="PhosphoScoring.idxml" compare="sim_size" delta="5700"/> |
| 336 </test> | 336 </test> |
| 337 </xml> | 337 </xml> |
| 338 <!-- TODO PSMFeatureExtractor should have auto tests with 2.7 https://github.com/OpenMS/OpenMS/pull/5087 --> | |
| 338 <xml name="manutest_PSMFeatureExtractor"> | 339 <xml name="manutest_PSMFeatureExtractor"> |
| 339 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible --> | 340 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible --> |
| 340 <param name="adv_opts_cond|test" value="true"/> | 341 <param name="adv_opts_cond|test" value="true"/> |
| 341 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> | 342 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> |
| 342 <param name="multiple_search_engines" value="true"/> | 343 <param name="multiple_search_engines" value="true"/> |
| 352 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> | 353 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> |
| 353 <param name="adv_opts_cond|skip_db_check" value="true"/> | 354 <param name="adv_opts_cond|skip_db_check" value="true"/> |
| 354 <param name="out_type" value="mzid"/> | 355 <param name="out_type" value="mzid"/> |
| 355 <output name="out" ftype="mzid" value="PSMFeatureExtractor.mzid" compare="sim_size" delta="500"/> | 356 <output name="out" ftype="mzid" value="PSMFeatureExtractor.mzid" compare="sim_size" delta="500"/> |
| 356 </test> | 357 </test> |
| 358 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible --> | |
| 359 <param name="adv_opts_cond|test" value="true"/> | |
| 360 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML"/> | |
| 361 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> | |
| 362 <param name="out_type" value="idxml"/> | |
| 363 <output name="out" ftype="idxml" value="PSMFeatureExtractor_3.idXML" compare="sim_size" delta="500"/> | |
| 364 </test> | |
| 357 </xml> | 365 </xml> |
| 358 <xml name="manutest_QCCalculator"> | 366 <xml name="manutest_QCCalculator"> |
| 359 <test expect_num_outputs="1"><!-- took test data from another test w mzML input --> | 367 <test expect_num_outputs="1"><!-- took test data from another test w mzML input --> |
| 360 <param name="adv_opts_selector" value="advanced"/> | 368 <param name="adv_opts_selector" value="advanced"/> |
| 361 <param name="adv_opts_cond|test" value="true"/> | 369 <param name="adv_opts_cond|test" value="true"/> |