comparison readme.md @ 5:34dda034b019 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3

4:031adfb7fce0

The tools work by:

Preprocessing:

- For each input / output data set parameter a directory is crated (named by
  the parameter)
- For input data set parameters the links to the actual location of the data
  sets are created

Main:

- The galaxy wrapper create two json config files: one containing the
  parameters and the values chosen by the user and the other the values of

5:34dda034b019

The tools work by:

Preprocessing:

- For input data set parameters the links to the actual location of the data
  sets are created, the link names are `element_identifier`.`EXT`, where `EXT`
  is an extension that is known by OpenMS
- In order to avoid name collisions for the created links each is placed in a
  unique directory: `PARAM_NAME/DATASET_ID`, where `PARAM_NAME` is the name
  of the parameter and `DATASET_ID` is the id of the Galaxy dataset 
- the same happens for output parameters that are in 1:1 correspondence with
  an input parameter


Main:

- The galaxy wrapper create two json config files: one containing the
  parameters and the values chosen by the user and the other the values of