Mercurial > repos > galaxyp > openms_novoradapter

diff OMSSAAdapter.patch @ 0:562d46a2f8b6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
author galaxyp
date Thu, 27 Aug 2020 19:40:35 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/OMSSAAdapter.patch	Thu Aug 27 19:40:35 2020 -0400
@@ -0,0 +1,10 @@
+--- OMSSAAdapter.xml	2020-06-16 15:51:40.315400730 +0200
++++ /tmp/OMSSAAdapter.xml	2020-06-16 15:50:23.536086074 +0200
+@@ -22,6 +22,7 @@
+ mkdir database &&
+ ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
+ 
++makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
+ ## Main program call
+ 
+ set -o pipefail &&