Mercurial > repos > galaxyp > openms_nucleicacidsearchengine

comparison OMSSAAdapter.patch @ 0:fe6eddc2e756 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
author galaxyp
date Thu, 27 Aug 2020 19:47:24 -0400
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-1:000000000000 0:fe6eddc2e756
1 --- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200
2 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200
3 @@ -22,6 +22,7 @@
4 mkdir database &&
5 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
6
7 +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
8 ## Main program call
9
10 set -o pipefail &&