Mercurial > repos > galaxyp > openms_omssaadapter
comparison OMSSAAdapter.xml @ 1:62795cdea5ea draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
| author | galaxyp |
|---|---|
| date | Thu, 24 Sep 2020 12:17:02 +0000 |
| parents | f91e7d51c17f |
| children | 886991df53f7 |
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| 0:f91e7d51c17f | 1:62795cdea5ea |
|---|---|
| 5289 <option value="ZGB (N-term)">ZGB (N-term)</option> | 5289 <option value="ZGB (N-term)">ZGB (N-term)</option> |
| 5290 <expand macro="list_string_san"/> | 5290 <expand macro="list_string_san"/> |
| 5291 </param> | 5291 </param> |
| 5292 <param name="v" argument="-v" type="integer" optional="true" value="1" label="number of missed cleavages allowed" help=""/> | 5292 <param name="v" argument="-v" type="integer" optional="true" value="1" label="number of missed cleavages allowed" help=""/> |
| 5293 <param name="enzyme" argument="-enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help=""> | 5293 <param name="enzyme" argument="-enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help=""> |
| 5294 <option value="Trypsin" selected="true">Trypsin</option> | |
| 5295 <option value="Trypsin/P">Trypsin/P</option> | |
| 5296 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
| 5297 <option value="Chymotrypsin">Chymotrypsin</option> | |
| 5298 <option value="CNBr">CNBr</option> | |
| 5294 <option value="Lys-C/P">Lys-C/P</option> | 5299 <option value="Lys-C/P">Lys-C/P</option> |
| 5295 <option value="Trypsin" selected="true">Trypsin</option> | 5300 <option value="no cleavage">no cleavage</option> |
| 5301 <option value="unspecific cleavage">unspecific cleavage</option> | |
| 5296 <option value="PepsinA">PepsinA</option> | 5302 <option value="PepsinA">PepsinA</option> |
| 5297 <option value="TrypChymo">TrypChymo</option> | 5303 <option value="TrypChymo">TrypChymo</option> |
| 5298 <option value="Trypsin/P">Trypsin/P</option> | |
| 5299 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> | 5304 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> |
| 5305 <option value="Asp-N">Asp-N</option> | |
| 5300 <option value="Formic_acid">Formic_acid</option> | 5306 <option value="Formic_acid">Formic_acid</option> |
| 5301 <option value="Lys-C">Lys-C</option> | 5307 <option value="Lys-C">Lys-C</option> |
| 5302 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
| 5303 <option value="Chymotrypsin">Chymotrypsin</option> | |
| 5304 <option value="no cleavage">no cleavage</option> | |
| 5305 <option value="unspecific cleavage">unspecific cleavage</option> | |
| 5306 <option value="Asp-N">Asp-N</option> | |
| 5307 <option value="CNBr">CNBr</option> | |
| 5308 <option value="Arg-C">Arg-C</option> | 5308 <option value="Arg-C">Arg-C</option> |
| 5309 <expand macro="list_string_san"/> | 5309 <expand macro="list_string_san"/> |
| 5310 </param> | 5310 </param> |
| 5311 <param name="hl" argument="-hl" type="integer" optional="true" value="30" label="maximum number of hits retained for one spectrum" help="Note: even when set to 1 OMSSA may report multiple hits with different charge states"/> | 5311 <param name="hl" argument="-hl" type="integer" optional="true" value="30" label="maximum number of hits retained for one spectrum" help="Note: even when set to 1 OMSSA may report multiple hits with different charge states"/> |
| 5312 <param name="he" argument="-he" type="float" optional="true" value="1000.0" label="the maximum e-value allowed in the hit list" help="If you set this parameter too small (e.g., he=1), this will effectively introduce FDR filtering. Thus, allowing a less stringent FDR during post-processing will nevertheless return the (better) FDR introduced here, since mediocre hits are not even reported"/> | 5312 <param name="he" argument="-he" type="float" optional="true" value="1000.0" label="the maximum e-value allowed in the hit list" help="If you set this parameter too small (e.g., he=1), this will effectively introduce FDR filtering. Thus, allowing a less stringent FDR during post-processing will nevertheless return the (better) FDR introduced here, since mediocre hits are not even reported"/> |