Mercurial > repos > galaxyp > openms_openpepxl
comparison OpenPepXL.xml @ 5:e8ddd32f450b draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
| author | galaxyp |
|---|---|
| date | Thu, 24 Sep 2020 12:35:30 +0000 |
| parents | a2a842b00f9c |
| children | 40cc19c0dbd6 |
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| 4:a2a842b00f9c | 5:e8ddd32f450b |
|---|---|
| 5369 <section name="peptide" title="Settings for digesting proteins into peptides" help="" expanded="false"> | 5369 <section name="peptide" title="Settings for digesting proteins into peptides" help="" expanded="false"> |
| 5370 <param name="min_size" argument="-peptide:min_size" type="integer" optional="true" value="5" label="Minimum size a peptide must have after digestion to be considered in the search" help=""/> | 5370 <param name="min_size" argument="-peptide:min_size" type="integer" optional="true" value="5" label="Minimum size a peptide must have after digestion to be considered in the search" help=""/> |
| 5371 <param name="missed_cleavages" argument="-peptide:missed_cleavages" type="integer" optional="true" value="2" label="Number of missed cleavages" help=""/> | 5371 <param name="missed_cleavages" argument="-peptide:missed_cleavages" type="integer" optional="true" value="2" label="Number of missed cleavages" help=""/> |
| 5372 <param name="enzyme" argument="-peptide:enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help=""> | 5372 <param name="enzyme" argument="-peptide:enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help=""> |
| 5373 <option value="Trypsin" selected="true">Trypsin</option> | 5373 <option value="Trypsin" selected="true">Trypsin</option> |
| 5374 <option value="Chymotrypsin">Chymotrypsin</option> | |
| 5375 <option value="Chymotrypsin/P">Chymotrypsin/P</option> | |
| 5376 <option value="CNBr">CNBr</option> | |
| 5377 <option value="Formic_acid">Formic_acid</option> | |
| 5378 <option value="Asp-N">Asp-N</option> | |
| 5379 <option value="Lys-C">Lys-C</option> | |
| 5380 <option value="Lys-N">Lys-N</option> | |
| 5381 <option value="Lys-C/P">Lys-C/P</option> | |
| 5382 <option value="Arg-C/P">Arg-C/P</option> | |
| 5383 <option value="Arg-C">Arg-C</option> | |
| 5384 <option value="Alpha-lytic protease">Alpha-lytic protease</option> | |
| 5385 <option value="2-iodobenzoate">2-iodobenzoate</option> | |
| 5386 <option value="iodosobenzoate">iodosobenzoate</option> | |
| 5387 <option value="staphylococcal protease/D">staphylococcal protease/D</option> | |
| 5388 <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option> | 5374 <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option> |
| 5389 <option value="Glu-C+P">Glu-C+P</option> | 5375 <option value="Glu-C+P">Glu-C+P</option> |
| 5390 <option value="PepsinA + P">PepsinA + P</option> | 5376 <option value="PepsinA + P">PepsinA + P</option> |
| 5391 <option value="cyanogen-bromide">cyanogen-bromide</option> | 5377 <option value="cyanogen-bromide">cyanogen-bromide</option> |
| 5392 <option value="Clostripain/P">Clostripain/P</option> | 5378 <option value="Clostripain/P">Clostripain/P</option> |
| 5393 <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option> | 5379 <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option> |
| 5394 <option value="no cleavage">no cleavage</option> | 5380 <option value="no cleavage">no cleavage</option> |
| 5395 <option value="unspecific cleavage">unspecific cleavage</option> | 5381 <option value="unspecific cleavage">unspecific cleavage</option> |
| 5382 <option value="Asp-N/B">Asp-N/B</option> | |
| 5383 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
| 5384 <option value="Chymotrypsin">Chymotrypsin</option> | |
| 5385 <option value="Chymotrypsin/P">Chymotrypsin/P</option> | |
| 5386 <option value="CNBr">CNBr</option> | |
| 5387 <option value="Formic_acid">Formic_acid</option> | |
| 5388 <option value="Lys-C">Lys-C</option> | |
| 5389 <option value="Asp-N">Asp-N</option> | |
| 5396 <option value="PepsinA">PepsinA</option> | 5390 <option value="PepsinA">PepsinA</option> |
| 5397 <option value="TrypChymo">TrypChymo</option> | 5391 <option value="TrypChymo">TrypChymo</option> |
| 5398 <option value="Trypsin/P">Trypsin/P</option> | 5392 <option value="Trypsin/P">Trypsin/P</option> |
| 5393 <option value="Arg-C/P">Arg-C/P</option> | |
| 5394 <option value="Arg-C">Arg-C</option> | |
| 5399 <option value="V8-DE">V8-DE</option> | 5395 <option value="V8-DE">V8-DE</option> |
| 5400 <option value="V8-E">V8-E</option> | 5396 <option value="V8-E">V8-E</option> |
| 5401 <option value="leukocyte elastase">leukocyte elastase</option> | 5397 <option value="leukocyte elastase">leukocyte elastase</option> |
| 5402 <option value="proline endopeptidase">proline endopeptidase</option> | 5398 <option value="proline endopeptidase">proline endopeptidase</option> |
| 5403 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> | 5399 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> |
| 5404 <option value="Asp-N/B">Asp-N/B</option> | 5400 <option value="Alpha-lytic protease">Alpha-lytic protease</option> |
| 5405 <option value="Asp-N_ambic">Asp-N_ambic</option> | 5401 <option value="2-iodobenzoate">2-iodobenzoate</option> |
| 5402 <option value="iodosobenzoate">iodosobenzoate</option> | |
| 5403 <option value="staphylococcal protease/D">staphylococcal protease/D</option> | |
| 5404 <option value="Lys-N">Lys-N</option> | |
| 5405 <option value="Lys-C/P">Lys-C/P</option> | |
| 5406 <expand macro="list_string_san"/> | 5406 <expand macro="list_string_san"/> |
| 5407 </param> | 5407 </param> |
| 5408 </section> | 5408 </section> |
| 5409 <section name="cross_linker" title="Description of the cross-linker reagent" help="" expanded="false"> | 5409 <section name="cross_linker" title="Description of the cross-linker reagent" help="" expanded="false"> |
| 5410 <param name="residue1" argument="-cross_linker:residue1" type="text" optional="true" value="K N-term" label="Comma separated residues, that the first side of a bifunctional cross-linker can attach to" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)"> | 5410 <param name="residue1" argument="-cross_linker:residue1" type="text" optional="true" value="K N-term" label="Comma separated residues, that the first side of a bifunctional cross-linker can attach to" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)"> |