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comparison OpenPepXL.xml @ 9:10d8b43176a9 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
author galaxyp
date Fri, 14 Jun 2024 21:39:56 +0000
parents 4d2b77fd7a28
children
comparison
equal deleted inserted replaced
8:4d2b77fd7a28 9:10d8b43176a9
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> 1 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Identification]--> 2 <!--Proposed Tool Section: [Cross-Linking]-->
4 <tool id="OpenPepXL" name="OpenPepXL" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> 3 <tool id="OpenPepXL" name="OpenPepXL" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
5 <description>Tool for protein-protein cross-linking identification using labeled linkers.</description> 4 <description>Tool for protein-protein cross-linking identification using labeled linkers</description>
6 <macros> 5 <macros>
7 <token name="@EXECUTABLE@">OpenPepXL</token> 6 <token name="@EXECUTABLE@">OpenPepXL</token>
8 <import>macros.xml</import> 7 <import>macros.xml</import>
9 </macros> 8 </macros>
10 <expand macro="requirements"/> 9 <expand macro="requirements"/>
13 @EXT_FOO@ 12 @EXT_FOO@
14 #import re 13 #import re
15 14
16 ## Preprocessing 15 ## Preprocessing
17 mkdir in && 16 mkdir in &&
18 ln -s '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' && 17 cp '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' &&
19 mkdir consensus && 18 mkdir consensus &&
20 ln -s '$consensus' 'consensus/${re.sub("[^\w\-_]", "_", $consensus.element_identifier)}.$gxy2omsext($consensus.ext)' && 19 cp '$consensus' 'consensus/${re.sub("[^\w\-_]", "_", $consensus.element_identifier)}.$gxy2omsext($consensus.ext)' &&
21 mkdir database && 20 mkdir database &&
22 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && 21 cp '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
23 #if "out_idXML_FLAG" in str($OPTIONAL_OUTPUTS).split(',') 22 #if "out_idXML_FLAG" in str($OPTIONAL_OUTPUTS).split(',')
24 mkdir out_idXML && 23 mkdir out_idXML &&
25 #end if 24 #end if
26 #if "out_mzIdentML_FLAG" in str($OPTIONAL_OUTPUTS).split(',') 25 #if "out_mzIdentML_FLAG" in str($OPTIONAL_OUTPUTS).split(',')
27 mkdir out_mzIdentML && 26 mkdir out_mzIdentML &&
30 mkdir out_xquestxml && 29 mkdir out_xquestxml &&
31 #end if 30 #end if
32 #if "out_xquest_specxml_FLAG" in str($OPTIONAL_OUTPUTS).split(',') 31 #if "out_xquest_specxml_FLAG" in str($OPTIONAL_OUTPUTS).split(',')
33 mkdir out_xquest_specxml && 32 mkdir out_xquest_specxml &&
34 #end if 33 #end if
34 ## advanced options
35 #if $adv_opts.decoy_database: 35 #if $adv_opts.decoy_database:
36 mkdir adv_opts.decoy_database && 36 mkdir adv_opts.decoy_database &&
37 ln -s '$adv_opts.decoy_database' 'adv_opts.decoy_database/${re.sub("[^\w\-_]", "_", $adv_opts.decoy_database.element_identifier)}.$gxy2omsext($adv_opts.decoy_database.ext)' && 37 cp '$adv_opts.decoy_database' 'adv_opts.decoy_database/${re.sub("[^\w\-_]", "_", $adv_opts.decoy_database.element_identifier)}.$gxy2omsext($adv_opts.decoy_database.ext)' &&
38 #end if 38 #end if
39
39 40
40 ## Main program call 41 ## Main program call
41 42
42 set -o pipefail && 43 set -o pipefail &&
43 @EXECUTABLE@ -write_ctd ./ && 44 @EXECUTABLE@ -write_ctd ./ &&
63 #end if 64 #end if
64 #if "out_xquest_specxml_FLAG" in str($OPTIONAL_OUTPUTS).split(',') 65 #if "out_xquest_specxml_FLAG" in str($OPTIONAL_OUTPUTS).split(',')
65 -out_xquest_specxml 66 -out_xquest_specxml
66 'out_xquest_specxml/output.${gxy2omsext("spec.xml")}' 67 'out_xquest_specxml/output.${gxy2omsext("spec.xml")}'
67 #end if 68 #end if
69 ## advanced options
68 #if $adv_opts.decoy_database: 70 #if $adv_opts.decoy_database:
69 -decoy_database 71 -decoy_database
70 'adv_opts.decoy_database/${re.sub("[^\w\-_]", "_", $adv_opts.decoy_database.element_identifier)}.$gxy2omsext($adv_opts.decoy_database.ext)' 72 'adv_opts.decoy_database/${re.sub("[^\w\-_]", "_", $adv_opts.decoy_database.element_identifier)}.$gxy2omsext($adv_opts.decoy_database.ext)'
71 #end if 73 #end if
74
72 #if len(str($OPTIONAL_OUTPUTS).split(',')) == 0 75 #if len(str($OPTIONAL_OUTPUTS).split(',')) == 0
73 | tee '$stdout' 76 | tee '$stdout'
74 #end if 77 #end if
75 78
76 ## Postprocessing 79 ## Postprocessing
92 <configfiles> 95 <configfiles>
93 <inputs name="args_json" data_style="paths"/> 96 <inputs name="args_json" data_style="paths"/>
94 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 97 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
95 </configfiles> 98 </configfiles>
96 <inputs> 99 <inputs>
97 <param argument="-in" type="data" format="mzml" optional="false" label="Input file containing the spectra" help=" select mzml data sets(s)"/> 100 <param argument="-in" type="data" format="mzml" label="Input file containing the spectra" help=" select mzml data sets(s)"/>
98 <param argument="-consensus" type="data" format="consensusxml" optional="false" label="Input file containing the linked mass peaks" help=" select consensusxml data sets(s)"/> 101 <param argument="-consensus" type="data" format="consensusxml" label="Input file containing the linked mass peaks" help=" select consensusxml data sets(s)"/>
99 <param argument="-database" type="data" format="fasta" optional="false" label="Input file containing the protein database" help=" select fasta data sets(s)"/> 102 <param argument="-database" type="data" format="fasta" label="Input file containing the protein database" help=" select fasta data sets(s)"/>
100 <param argument="-decoy_string" type="text" optional="true" value="DECOY_" label="String that was appended (or prefixed - see 'prefix' flag below) to the accessions in the protein database to indicate decoy proteins" help=""> 103 <param argument="-decoy_string" type="text" value="DECOY_" label="String that was appended (or prefixed - see 'prefix' flag below) to the accessions in the protein database to indicate decoy proteins" help="">
101 <expand macro="list_string_san" name="decoy_string"/> 104 <expand macro="list_string_san" name="decoy_string"/>
102 </param> 105 </param>
103 <param argument="-decoy_prefix" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Set to true, if the decoy_string is a prefix of accessions in the protein database" help="Otherwise it is a suffix"/> 106 <param argument="-decoy_prefix" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Set to true, if the decoy_string is a prefix of accessions in the protein database" help="Otherwise it is a suffix"/>
104 <section name="precursor" title="Precursor filtering settings" help="" expanded="false"> 107 <section name="precursor" title="Precursor filtering settings" help="" expanded="false">
105 <param name="mass_tolerance" argument="-precursor:mass_tolerance" type="float" optional="true" value="10.0" label="Width of precursor mass tolerance window" help=""/> 108 <param name="mass_tolerance" argument="-precursor:mass_tolerance" type="float" value="10.0" label="Width of precursor mass tolerance window" help=""/>
106 <param name="mass_tolerance_unit" argument="-precursor:mass_tolerance_unit" type="select" optional="true" label="Unit of precursor mass tolerance" help=""> 109 <param name="mass_tolerance_unit" argument="-precursor:mass_tolerance_unit" type="select" label="Unit of precursor mass tolerance" help="">
107 <option value="ppm" selected="true">ppm</option> 110 <option value="ppm" selected="true">ppm</option>
108 <option value="Da">Da</option> 111 <option value="Da">Da</option>
109 <expand macro="list_string_san" name="mass_tolerance_unit"/> 112 <expand macro="list_string_san" name="mass_tolerance_unit"/>
110 </param> 113 </param>
111 <param name="min_charge" argument="-precursor:min_charge" type="integer" optional="true" value="2" label="Minimum precursor charge to be considered" help=""/> 114 <param name="min_charge" argument="-precursor:min_charge" type="integer" value="2" label="Minimum precursor charge to be considered" help=""/>
112 <param name="max_charge" argument="-precursor:max_charge" type="integer" optional="true" value="8" label="Maximum precursor charge to be considered" help=""/> 115 <param name="max_charge" argument="-precursor:max_charge" type="integer" value="8" label="Maximum precursor charge to be considered" help=""/>
113 <param name="corrections" argument="-precursor:corrections" type="text" optional="true" value="4 3 2 1 0" label="Monoisotopic peak correction" help="Matches candidates for possible monoisotopic precursor peaks for experimental mass m and given numbers n at masses (m - n * (C13-C12)). These should be ordered from more extreme to less extreme corrections. Numbers later in the list will be preferred in case of ambiguities (space separated list, in order to allow for spaces in list items surround them by single quotes)"> 116 <param name="corrections" argument="-precursor:corrections" type="text" value="4 3 2 1 0" label="Monoisotopic peak correction" help="Matches candidates for possible monoisotopic precursor peaks for experimental mass m and given numbers n at masses (m - n * (C13-C12)). These should be ordered from more extreme to less extreme corrections. Numbers later in the list will be preferred in case of ambiguities (space separated list, in order to allow for spaces in list items surround them by single quotes)">
114 <expand macro="list_integer_valsan" name="corrections"/> 117 <expand macro="list_integer_valsan" name="corrections"/>
115 </param> 118 </param>
116 </section> 119 </section>
117 <section name="fragment" title="Fragment peak matching settings" help="" expanded="false"> 120 <section name="fragment" title="Fragment peak matching settings" help="" expanded="false">
118 <param name="mass_tolerance" argument="-fragment:mass_tolerance" type="float" optional="true" value="20.0" label="Fragment mass tolerance" help=""/> 121 <param name="mass_tolerance" argument="-fragment:mass_tolerance" type="float" value="20.0" label="Fragment mass tolerance" help=""/>
119 <param name="mass_tolerance_xlinks" argument="-fragment:mass_tolerance_xlinks" type="float" optional="true" value="20.0" label="Fragment mass tolerance for cross-link ions" help=""/> 122 <param name="mass_tolerance_xlinks" argument="-fragment:mass_tolerance_xlinks" type="float" value="20.0" label="Fragment mass tolerance for cross-link ions" help=""/>
120 <param name="mass_tolerance_unit" argument="-fragment:mass_tolerance_unit" type="select" optional="true" label="Unit of fragment m" help=""> 123 <param name="mass_tolerance_unit" argument="-fragment:mass_tolerance_unit" type="select" label="Unit of fragment m" help="">
121 <option value="ppm" selected="true">ppm</option> 124 <option value="ppm" selected="true">ppm</option>
122 <option value="Da">Da</option> 125 <option value="Da">Da</option>
123 <expand macro="list_string_san" name="mass_tolerance_unit"/> 126 <expand macro="list_string_san" name="mass_tolerance_unit"/>
124 </param> 127 </param>
125 </section> 128 </section>
126 <section name="modifications" title="Peptide modification settings" help="" expanded="false"> 129 <section name="modifications" title="Peptide modification settings" help="" expanded="false">
127 <param name="fixed" argument="-modifications:fixed" multiple="true" type="select" optional="true" label="Fixed modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Carbamidomethyl (C)'"> 130 <param name="fixed" argument="-modifications:fixed" type="select" multiple="true" optional="false" label="Fixed modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Carbamidomethyl (C)'">
128 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> 131 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option>
129 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option> 132 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option>
130 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option> 133 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option>
131 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 134 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
132 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 135 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
133 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 136 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>
134 <option value="2-succinyl (C)">2-succinyl (C)</option> 137 <option value="2-succinyl (C)">2-succinyl (C)</option>
135 <option value="2HPG (R)">2HPG (R)</option> 138 <option value="2HPG (R)">2HPG (R)</option>
136 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> 139 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option>
140 <option value="3-hydroxybenzyl-phosphate (K)">3-hydroxybenzyl-phosphate (K)</option>
141 <option value="3-hydroxybenzyl-phosphate (S)">3-hydroxybenzyl-phosphate (S)</option>
142 <option value="3-hydroxybenzyl-phosphate (T)">3-hydroxybenzyl-phosphate (T)</option>
143 <option value="3-hydroxybenzyl-phosphate (Y)">3-hydroxybenzyl-phosphate (Y)</option>
137 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> 144 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option>
138 <option value="3sulfo (N-term)">3sulfo (N-term)</option> 145 <option value="3sulfo (N-term)">3sulfo (N-term)</option>
139 <option value="4-ONE (C)">4-ONE (C)</option> 146 <option value="4-ONE (C)">4-ONE (C)</option>
140 <option value="4-ONE (H)">4-ONE (H)</option> 147 <option value="4-ONE (H)">4-ONE (H)</option>
141 <option value="4-ONE (K)">4-ONE (K)</option> 148 <option value="4-ONE (K)">4-ONE (K)</option>
221 <option value="Ammonium (D)">Ammonium (D)</option> 228 <option value="Ammonium (D)">Ammonium (D)</option>
222 <option value="Ammonium (E)">Ammonium (E)</option> 229 <option value="Ammonium (E)">Ammonium (E)</option>
223 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> 230 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option>
224 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> 231 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option>
225 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> 232 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option>
233 <option value="Andro-H2O (C)">Andro-H2O (C)</option>
226 <option value="Archaeol (C)">Archaeol (C)</option> 234 <option value="Archaeol (C)">Archaeol (C)</option>
227 <option value="Arg (N-term)">Arg (N-term)</option> 235 <option value="Arg (N-term)">Arg (N-term)</option>
228 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option> 236 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option>
229 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option> 237 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option>
230 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option> 238 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option>
324 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option> 332 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option>
325 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> 333 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option>
326 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> 334 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option>
327 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> 335 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option>
328 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> 336 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option>
337 <option value="Biotin:Aha-DADPS (M)">Biotin:Aha-DADPS (M)</option>
329 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> 338 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option>
330 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> 339 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option>
331 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> 340 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option>
332 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> 341 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option>
333 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> 342 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option>
356 <option value="BITC (C)">BITC (C)</option> 365 <option value="BITC (C)">BITC (C)</option>
357 <option value="BITC (K)">BITC (K)</option> 366 <option value="BITC (K)">BITC (K)</option>
358 <option value="BITC (N-term)">BITC (N-term)</option> 367 <option value="BITC (N-term)">BITC (N-term)</option>
359 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> 368 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option>
360 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> 369 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option>
361 <option value="Bodipy (C)">Bodipy (C)</option>
362 <option value="Brij35 (N-term)">Brij35 (N-term)</option> 370 <option value="Brij35 (N-term)">Brij35 (N-term)</option>
363 <option value="Brij58 (N-term)">Brij58 (N-term)</option> 371 <option value="Brij58 (N-term)">Brij58 (N-term)</option>
364 <option value="Bromo (F)">Bromo (F)</option> 372 <option value="Bromo (F)">Bromo (F)</option>
365 <option value="Bromo (H)">Bromo (H)</option> 373 <option value="Bromo (H)">Bromo (H)</option>
366 <option value="Bromo (W)">Bromo (W)</option> 374 <option value="Bromo (W)">Bromo (W)</option>
788 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option> 796 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option>
789 <option value="Dehydrated (S)">Dehydrated (S)</option> 797 <option value="Dehydrated (S)">Dehydrated (S)</option>
790 <option value="Dehydrated (T)">Dehydrated (T)</option> 798 <option value="Dehydrated (T)">Dehydrated (T)</option>
791 <option value="Dehydrated (Y)">Dehydrated (Y)</option> 799 <option value="Dehydrated (Y)">Dehydrated (Y)</option>
792 <option value="Dehydro (C)">Dehydro (C)</option> 800 <option value="Dehydro (C)">Dehydro (C)</option>
801 <option value="Delta:H(-1)N(-1)18O(1) (N)">Delta:H(-1)N(-1)18O(1) (N)</option>
793 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option> 802 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option>
794 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option> 803 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option>
795 <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option>
796 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option> 804 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option>
797 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> 805 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option>
798 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> 806 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option>
799 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> 807 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option>
800 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option> 808 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option>
801 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> 809 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option>
802 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> 810 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option>
803 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> 811 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option>
804 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> 812 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option>
805 <option value="Delta:H(3)C(3)O(2) (K)">Delta:H(3)C(3)O(2) (K)</option>
806 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> 813 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option>
807 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> 814 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option>
808 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> 815 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option>
809 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> 816 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option>
810 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> 817 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option>
812 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option> 819 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option>
813 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> 820 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option>
814 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> 821 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option>
815 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> 822 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option>
816 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option> 823 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option>
824 <option value="Delta:H(4)C(3)O(2) (K)">Delta:H(4)C(3)O(2) (K)</option>
817 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option> 825 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option>
818 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> 826 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option>
819 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> 827 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option>
820 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> 828 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option>
821 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> 829 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option>
1384 <option value="Ethanolamine (D)">Ethanolamine (D)</option> 1392 <option value="Ethanolamine (D)">Ethanolamine (D)</option>
1385 <option value="Ethanolamine (E)">Ethanolamine (E)</option> 1393 <option value="Ethanolamine (E)">Ethanolamine (E)</option>
1386 <option value="Ethanolyl (C)">Ethanolyl (C)</option> 1394 <option value="Ethanolyl (C)">Ethanolyl (C)</option>
1387 <option value="Ethanolyl (K)">Ethanolyl (K)</option> 1395 <option value="Ethanolyl (K)">Ethanolyl (K)</option>
1388 <option value="Ethanolyl (R)">Ethanolyl (R)</option> 1396 <option value="Ethanolyl (R)">Ethanolyl (R)</option>
1389 <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option>
1390 <option value="Ethyl (C-term)">Ethyl (C-term)</option> 1397 <option value="Ethyl (C-term)">Ethyl (C-term)</option>
1391 <option value="Ethyl (D)">Ethyl (D)</option> 1398 <option value="Ethyl (D)">Ethyl (D)</option>
1392 <option value="Ethyl (E)">Ethyl (E)</option> 1399 <option value="Ethyl (E)">Ethyl (E)</option>
1393 <option value="Ethyl (K)">Ethyl (K)</option> 1400 <option value="Ethyl (K)">Ethyl (K)</option>
1394 <option value="Ethyl (N-term)">Ethyl (N-term)</option> 1401 <option value="Ethyl (N-term)">Ethyl (N-term)</option>
1478 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option> 1485 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option>
1479 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option> 1486 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option>
1480 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option> 1487 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option>
1481 <option value="Glu (E)">Glu (E)</option> 1488 <option value="Glu (E)">Glu (E)</option>
1482 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option> 1489 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option>
1490 <option value="Glu+O(2) (H)">Glu+O(2) (H)</option>
1483 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option> 1491 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option>
1484 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option> 1492 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option>
1485 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option> 1493 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option>
1486 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option> 1494 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option>
1487 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option> 1495 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option>
1492 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option> 1500 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option>
1493 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option> 1501 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option>
1494 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option> 1502 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option>
1495 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option> 1503 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option>
1496 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option> 1504 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option>
1497 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)</option>
1498 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> 1505 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option>
1499 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option> 1506 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option>
1500 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option> 1507 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option>
1501 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option> 1508 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option>
1502 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option> 1509 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option>
1516 <option value="Gluratylation (K)">Gluratylation (K)</option> 1523 <option value="Gluratylation (K)">Gluratylation (K)</option>
1517 <option value="Glutathione (C)">Glutathione (C)</option> 1524 <option value="Glutathione (C)">Glutathione (C)</option>
1518 <option value="Gly (K)">Gly (K)</option> 1525 <option value="Gly (K)">Gly (K)</option>
1519 <option value="Gly (S)">Gly (S)</option> 1526 <option value="Gly (S)">Gly (S)</option>
1520 <option value="Gly (T)">Gly (T)</option> 1527 <option value="Gly (T)">Gly (T)</option>
1528 <option value="Gly+O(2) (H)">Gly+O(2) (H)</option>
1521 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option> 1529 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option>
1522 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option> 1530 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option>
1523 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option> 1531 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option>
1524 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option> 1532 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option>
1525 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option> 1533 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option>
1906 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option> 1914 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option>
1907 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> 1915 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option>
1908 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> 1916 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option>
1909 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> 1917 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option>
1910 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> 1918 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option>
1919 <option value="Hex(6)HexNAc(5)NeuAc(3) (N)">Hex(6)HexNAc(5)NeuAc(3) (N)</option>
1911 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> 1920 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option>
1912 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> 1921 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option>
1913 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> 1922 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option>
1914 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> 1923 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option>
1915 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> 1924 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option>
1917 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> 1926 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option>
1918 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> 1927 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option>
1919 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> 1928 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option>
1920 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> 1929 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option>
1921 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> 1930 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option>
1931 <option value="Hex(7)HexNAc(6) (N)">Hex(7)HexNAc(6) (N)</option>
1932 <option value="Hex(7)HexNAc(6) (S)">Hex(7)HexNAc(6) (S)</option>
1933 <option value="Hex(7)HexNAc(6) (T)">Hex(7)HexNAc(6) (T)</option>
1922 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> 1934 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option>
1923 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> 1935 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option>
1924 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> 1936 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option>
1925 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> 1937 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option>
1926 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> 1938 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option>
1972 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> 1984 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option>
1973 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> 1985 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option>
1974 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> 1986 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option>
1975 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> 1987 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option>
1976 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> 1988 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option>
1989 <option value="His+O(2) (H)">His+O(2) (H)</option>
1977 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option> 1990 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option>
1978 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option> 1991 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option>
1979 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option> 1992 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option>
1980 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option> 1993 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option>
1981 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option> 1994 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option>
2109 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> 2122 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option>
2110 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option> 2123 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option>
2111 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> 2124 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option>
2112 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> 2125 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option>
2113 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> 2126 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option>
2127 <option value="Kdo (S)">Kdo (S)</option>
2128 <option value="Kdo (T)">Kdo (T)</option>
2114 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> 2129 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option>
2115 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> 2130 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option>
2116 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> 2131 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option>
2117 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> 2132 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option>
2118 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> 2133 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option>
2134 <option value="Label:13C(3)15N(1) (S)">Label:13C(3)15N(1) (S)</option>
2119 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> 2135 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option>
2120 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> 2136 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option>
2121 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> 2137 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option>
2122 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> 2138 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option>
2123 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> 2139 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option>
2198 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option> 2214 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option>
2199 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> 2215 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option>
2200 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> 2216 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option>
2201 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option> 2217 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option>
2202 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> 2218 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option>
2219 <option value="LG-pyrrole (C)">LG-pyrrole (C)</option>
2203 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> 2220 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option>
2204 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> 2221 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option>
2205 <option value="Lipoyl (K)">Lipoyl (K)</option> 2222 <option value="Lipoyl (K)">Lipoyl (K)</option>
2206 <option value="LRGG (K)">LRGG (K)</option> 2223 <option value="LRGG (K)">LRGG (K)</option>
2207 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> 2224 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option>
2208 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> 2225 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option>
2226 <option value="LTX+Lophotoxin (Y)">LTX+Lophotoxin (Y)</option>
2209 <option value="Lys (N-term)">Lys (N-term)</option> 2227 <option value="Lys (N-term)">Lys (N-term)</option>
2228 <option value="Lys+O(2) (H)">Lys+O(2) (H)</option>
2210 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option> 2229 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option>
2211 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option> 2230 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option>
2212 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option> 2231 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option>
2213 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option> 2232 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option>
2214 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option> 2233 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option>
2239 <option value="maleimide5 (C)">maleimide5 (C)</option> 2258 <option value="maleimide5 (C)">maleimide5 (C)</option>
2240 <option value="maleimide5 (K)">maleimide5 (K)</option> 2259 <option value="maleimide5 (K)">maleimide5 (K)</option>
2241 <option value="Malonyl (C)">Malonyl (C)</option> 2260 <option value="Malonyl (C)">Malonyl (C)</option>
2242 <option value="Malonyl (K)">Malonyl (K)</option> 2261 <option value="Malonyl (K)">Malonyl (K)</option>
2243 <option value="Malonyl (S)">Malonyl (S)</option> 2262 <option value="Malonyl (S)">Malonyl (S)</option>
2263 <option value="MBS+peptide (C)">MBS+peptide (C)</option>
2244 <option value="MDCC (C)">MDCC (C)</option> 2264 <option value="MDCC (C)">MDCC (C)</option>
2245 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option> 2265 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option>
2246 <option value="Menadione (C)">Menadione (C)</option> 2266 <option value="Menadione (C)">Menadione (C)</option>
2247 <option value="Menadione (K)">Menadione (K)</option> 2267 <option value="Menadione (K)">Menadione (K)</option>
2248 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option> 2268 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option>
2250 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option> 2270 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option>
2251 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option> 2271 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option>
2252 <option value="MesitylOxide (H)">MesitylOxide (H)</option> 2272 <option value="MesitylOxide (H)">MesitylOxide (H)</option>
2253 <option value="MesitylOxide (K)">MesitylOxide (K)</option> 2273 <option value="MesitylOxide (K)">MesitylOxide (K)</option>
2254 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option> 2274 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option>
2275 <option value="Met+O(2) (H)">Met+O(2) (H)</option>
2255 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option> 2276 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option>
2256 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option> 2277 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option>
2257 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option> 2278 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option>
2258 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option> 2279 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option>
2259 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option> 2280 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option>
2433 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option> 2454 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option>
2434 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option> 2455 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option>
2435 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option> 2456 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option>
2436 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> 2457 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option>
2437 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> 2458 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option>
2438 <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option>
2439 <option value="NP40 (N-term)">NP40 (N-term)</option> 2459 <option value="NP40 (N-term)">NP40 (N-term)</option>
2440 <option value="NQIGG (K)">NQIGG (K)</option> 2460 <option value="NQIGG (K)">NQIGG (K)</option>
2441 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option> 2461 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option>
2442 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option> 2462 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option>
2443 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option> 2463 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option>
2521 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option> 2541 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option>
2522 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option> 2542 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option>
2523 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option> 2543 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option>
2524 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option> 2544 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option>
2525 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option> 2545 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option>
2546 <option value="phenyl-phosphate (K)">phenyl-phosphate (K)</option>
2547 <option value="phenyl-phosphate (S)">phenyl-phosphate (S)</option>
2548 <option value="phenyl-phosphate (T)">phenyl-phosphate (T)</option>
2549 <option value="phenyl-phosphate (Y)">phenyl-phosphate (Y)</option>
2526 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> 2550 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option>
2527 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> 2551 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option>
2528 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> 2552 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option>
2529 <option value="Phospho (C)">Phospho (C)</option> 2553 <option value="Phospho (C)">Phospho (C)</option>
2530 <option value="Phospho (D)">Phospho (D)</option> 2554 <option value="Phospho (D)">Phospho (D)</option>
2535 <option value="Phospho (S)">Phospho (S)</option> 2559 <option value="Phospho (S)">Phospho (S)</option>
2536 <option value="Phospho (T)">Phospho (T)</option> 2560 <option value="Phospho (T)">Phospho (T)</option>
2537 <option value="Phospho (Y)">Phospho (Y)</option> 2561 <option value="Phospho (Y)">Phospho (Y)</option>
2538 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option> 2562 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option>
2539 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option> 2563 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option>
2564 <option value="Phosphoadenosine (S)">Phosphoadenosine (S)</option>
2540 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option> 2565 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option>
2541 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option> 2566 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option>
2542 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option> 2567 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option>
2543 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option> 2568 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option>
2544 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option> 2569 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option>
2566 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option> 2591 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option>
2567 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option> 2592 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option>
2568 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option> 2593 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option>
2569 <option value="Piperidine (K)">Piperidine (K)</option> 2594 <option value="Piperidine (K)">Piperidine (K)</option>
2570 <option value="Piperidine (N-term)">Piperidine (N-term)</option> 2595 <option value="Piperidine (N-term)">Piperidine (N-term)</option>
2596 <option value="Pro+O(2) (H)">Pro+O(2) (H)</option>
2571 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option> 2597 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option>
2572 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option> 2598 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option>
2573 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option> 2599 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option>
2574 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option> 2600 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option>
2575 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option> 2601 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option>
2643 <option value="QEQTGG (K)">QEQTGG (K)</option> 2669 <option value="QEQTGG (K)">QEQTGG (K)</option>
2644 <option value="QQQTGG (K)">QQQTGG (K)</option> 2670 <option value="QQQTGG (K)">QQQTGG (K)</option>
2645 <option value="QTGG (K)">QTGG (K)</option> 2671 <option value="QTGG (K)">QTGG (K)</option>
2646 <option value="Quinone (W)">Quinone (W)</option> 2672 <option value="Quinone (W)">Quinone (W)</option>
2647 <option value="Quinone (Y)">Quinone (Y)</option> 2673 <option value="Quinone (Y)">Quinone (Y)</option>
2674 <option value="RBS-ID_Uridine (A)">RBS-ID_Uridine (A)</option>
2675 <option value="RBS-ID_Uridine (C)">RBS-ID_Uridine (C)</option>
2676 <option value="RBS-ID_Uridine (D)">RBS-ID_Uridine (D)</option>
2677 <option value="RBS-ID_Uridine (E)">RBS-ID_Uridine (E)</option>
2678 <option value="RBS-ID_Uridine (F)">RBS-ID_Uridine (F)</option>
2679 <option value="RBS-ID_Uridine (G)">RBS-ID_Uridine (G)</option>
2680 <option value="RBS-ID_Uridine (H)">RBS-ID_Uridine (H)</option>
2681 <option value="RBS-ID_Uridine (I)">RBS-ID_Uridine (I)</option>
2682 <option value="RBS-ID_Uridine (K)">RBS-ID_Uridine (K)</option>
2683 <option value="RBS-ID_Uridine (L)">RBS-ID_Uridine (L)</option>
2684 <option value="RBS-ID_Uridine (M)">RBS-ID_Uridine (M)</option>
2685 <option value="RBS-ID_Uridine (N)">RBS-ID_Uridine (N)</option>
2686 <option value="RBS-ID_Uridine (P)">RBS-ID_Uridine (P)</option>
2687 <option value="RBS-ID_Uridine (Q)">RBS-ID_Uridine (Q)</option>
2688 <option value="RBS-ID_Uridine (R)">RBS-ID_Uridine (R)</option>
2689 <option value="RBS-ID_Uridine (S)">RBS-ID_Uridine (S)</option>
2690 <option value="RBS-ID_Uridine (T)">RBS-ID_Uridine (T)</option>
2691 <option value="RBS-ID_Uridine (V)">RBS-ID_Uridine (V)</option>
2692 <option value="RBS-ID_Uridine (W)">RBS-ID_Uridine (W)</option>
2693 <option value="RBS-ID_Uridine (Y)">RBS-ID_Uridine (Y)</option>
2648 <option value="Retinylidene (K)">Retinylidene (K)</option> 2694 <option value="Retinylidene (K)">Retinylidene (K)</option>
2649 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> 2695 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option>
2650 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> 2696 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option>
2651 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> 2697 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option>
2652 <option value="RNPXlink2 (F)">RNPXlink2 (F)</option>
2653 <option value="RNPXlink2 (K)">RNPXlink2 (K)</option>
2654 <option value="RNPXlink2 (L)">RNPXlink2 (L)</option>
2655 <option value="RNPXlink3 (C)">RNPXlink3 (C)</option>
2656 <option value="RNPXlink3 (F)">RNPXlink3 (F)</option>
2657 <option value="RNPXlink4 (C)">RNPXlink4 (C)</option>
2658 <option value="RNPXlink5 (F)">RNPXlink5 (F)</option>
2659 <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option>
2660 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> 2698 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option>
2661 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> 2699 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option>
2662 <option value="Saligenin (H)">Saligenin (H)</option> 2700 <option value="Saligenin (H)">Saligenin (H)</option>
2663 <option value="Saligenin (K)">Saligenin (K)</option> 2701 <option value="Saligenin (K)">Saligenin (K)</option>
2664 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option> 2702 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option>
2682 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option> 2720 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option>
2683 <option value="serotonylation (Q)">serotonylation (Q)</option> 2721 <option value="serotonylation (Q)">serotonylation (Q)</option>
2684 <option value="shTMT (K)">shTMT (K)</option> 2722 <option value="shTMT (K)">shTMT (K)</option>
2685 <option value="shTMT (N-term)">shTMT (N-term)</option> 2723 <option value="shTMT (N-term)">shTMT (N-term)</option>
2686 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option> 2724 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option>
2725 <option value="shTMTpro (K)">shTMTpro (K)</option>
2726 <option value="shTMTpro (N-term)">shTMTpro (N-term)</option>
2727 <option value="shTMTpro (Protein N-term)">shTMTpro (Protein N-term)</option>
2687 <option value="SMA (K)">SMA (K)</option> 2728 <option value="SMA (K)">SMA (K)</option>
2688 <option value="SMA (N-term)">SMA (N-term)</option> 2729 <option value="SMA (N-term)">SMA (N-term)</option>
2689 <option value="spermidine (Q)">spermidine (Q)</option> 2730 <option value="spermidine (Q)">spermidine (Q)</option>
2690 <option value="spermine (Q)">spermine (Q)</option> 2731 <option value="spermine (Q)">spermine (Q)</option>
2691 <option value="SPITC (K)">SPITC (K)</option> 2732 <option value="SPITC (K)">SPITC (K)</option>
2857 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option> 2898 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option>
2858 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option> 2899 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option>
2859 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option> 2900 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option>
2860 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option> 2901 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option>
2861 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option> 2902 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option>
2862 <option value="Ub-amide (C)">Ub-amide (C)</option>
2863 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> 2903 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option>
2864 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> 2904 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option>
2865 <option value="Ub-VME (C)">Ub-VME (C)</option> 2905 <option value="Ub-VME (C)">Ub-VME (C)</option>
2866 <option value="UgiJoullie (D)">UgiJoullie (D)</option> 2906 <option value="UgiJoullie (D)">UgiJoullie (D)</option>
2867 <option value="UgiJoullie (E)">UgiJoullie (E)</option> 2907 <option value="UgiJoullie (E)">UgiJoullie (E)</option>
3052 <option value="ZGB (K)">ZGB (K)</option> 3092 <option value="ZGB (K)">ZGB (K)</option>
3053 <option value="ZGB (N-term)">ZGB (N-term)</option> 3093 <option value="ZGB (N-term)">ZGB (N-term)</option>
3054 <option value="ZQG (K)">ZQG (K)</option> 3094 <option value="ZQG (K)">ZQG (K)</option>
3055 <expand macro="list_string_san" name="fixed"/> 3095 <expand macro="list_string_san" name="fixed"/>
3056 </param> 3096 </param>
3057 <param name="variable" argument="-modifications:variable" multiple="true" type="select" optional="true" label="Variable modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Oxidation (M)'"> 3097 <param name="variable" argument="-modifications:variable" type="select" multiple="true" optional="false" label="Variable modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Oxidation (M)'">
3058 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> 3098 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option>
3059 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option> 3099 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option>
3060 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option> 3100 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option>
3061 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 3101 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
3062 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 3102 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
3063 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 3103 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>
3064 <option value="2-succinyl (C)">2-succinyl (C)</option> 3104 <option value="2-succinyl (C)">2-succinyl (C)</option>
3065 <option value="2HPG (R)">2HPG (R)</option> 3105 <option value="2HPG (R)">2HPG (R)</option>
3066 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> 3106 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option>
3107 <option value="3-hydroxybenzyl-phosphate (K)">3-hydroxybenzyl-phosphate (K)</option>
3108 <option value="3-hydroxybenzyl-phosphate (S)">3-hydroxybenzyl-phosphate (S)</option>
3109 <option value="3-hydroxybenzyl-phosphate (T)">3-hydroxybenzyl-phosphate (T)</option>
3110 <option value="3-hydroxybenzyl-phosphate (Y)">3-hydroxybenzyl-phosphate (Y)</option>
3067 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> 3111 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option>
3068 <option value="3sulfo (N-term)">3sulfo (N-term)</option> 3112 <option value="3sulfo (N-term)">3sulfo (N-term)</option>
3069 <option value="4-ONE (C)">4-ONE (C)</option> 3113 <option value="4-ONE (C)">4-ONE (C)</option>
3070 <option value="4-ONE (H)">4-ONE (H)</option> 3114 <option value="4-ONE (H)">4-ONE (H)</option>
3071 <option value="4-ONE (K)">4-ONE (K)</option> 3115 <option value="4-ONE (K)">4-ONE (K)</option>
3151 <option value="Ammonium (D)">Ammonium (D)</option> 3195 <option value="Ammonium (D)">Ammonium (D)</option>
3152 <option value="Ammonium (E)">Ammonium (E)</option> 3196 <option value="Ammonium (E)">Ammonium (E)</option>
3153 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> 3197 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option>
3154 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> 3198 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option>
3155 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> 3199 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option>
3200 <option value="Andro-H2O (C)">Andro-H2O (C)</option>
3156 <option value="Archaeol (C)">Archaeol (C)</option> 3201 <option value="Archaeol (C)">Archaeol (C)</option>
3157 <option value="Arg (N-term)">Arg (N-term)</option> 3202 <option value="Arg (N-term)">Arg (N-term)</option>
3158 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option> 3203 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option>
3159 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option> 3204 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option>
3160 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option> 3205 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option>
3254 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option> 3299 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option>
3255 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> 3300 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option>
3256 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> 3301 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option>
3257 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> 3302 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option>
3258 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> 3303 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option>
3304 <option value="Biotin:Aha-DADPS (M)">Biotin:Aha-DADPS (M)</option>
3259 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> 3305 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option>
3260 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> 3306 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option>
3261 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> 3307 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option>
3262 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> 3308 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option>
3263 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> 3309 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option>
3286 <option value="BITC (C)">BITC (C)</option> 3332 <option value="BITC (C)">BITC (C)</option>
3287 <option value="BITC (K)">BITC (K)</option> 3333 <option value="BITC (K)">BITC (K)</option>
3288 <option value="BITC (N-term)">BITC (N-term)</option> 3334 <option value="BITC (N-term)">BITC (N-term)</option>
3289 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> 3335 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option>
3290 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> 3336 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option>
3291 <option value="Bodipy (C)">Bodipy (C)</option>
3292 <option value="Brij35 (N-term)">Brij35 (N-term)</option> 3337 <option value="Brij35 (N-term)">Brij35 (N-term)</option>
3293 <option value="Brij58 (N-term)">Brij58 (N-term)</option> 3338 <option value="Brij58 (N-term)">Brij58 (N-term)</option>
3294 <option value="Bromo (F)">Bromo (F)</option> 3339 <option value="Bromo (F)">Bromo (F)</option>
3295 <option value="Bromo (H)">Bromo (H)</option> 3340 <option value="Bromo (H)">Bromo (H)</option>
3296 <option value="Bromo (W)">Bromo (W)</option> 3341 <option value="Bromo (W)">Bromo (W)</option>
3718 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option> 3763 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option>
3719 <option value="Dehydrated (S)">Dehydrated (S)</option> 3764 <option value="Dehydrated (S)">Dehydrated (S)</option>
3720 <option value="Dehydrated (T)">Dehydrated (T)</option> 3765 <option value="Dehydrated (T)">Dehydrated (T)</option>
3721 <option value="Dehydrated (Y)">Dehydrated (Y)</option> 3766 <option value="Dehydrated (Y)">Dehydrated (Y)</option>
3722 <option value="Dehydro (C)">Dehydro (C)</option> 3767 <option value="Dehydro (C)">Dehydro (C)</option>
3768 <option value="Delta:H(-1)N(-1)18O(1) (N)">Delta:H(-1)N(-1)18O(1) (N)</option>
3723 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option> 3769 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option>
3724 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option> 3770 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option>
3725 <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option>
3726 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option> 3771 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option>
3727 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> 3772 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option>
3728 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> 3773 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option>
3729 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> 3774 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option>
3730 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option> 3775 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option>
3731 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> 3776 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option>
3732 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> 3777 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option>
3733 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> 3778 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option>
3734 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> 3779 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option>
3735 <option value="Delta:H(3)C(3)O(2) (K)">Delta:H(3)C(3)O(2) (K)</option>
3736 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> 3780 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option>
3737 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> 3781 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option>
3738 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> 3782 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option>
3739 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> 3783 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option>
3740 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> 3784 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option>
3742 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option> 3786 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option>
3743 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> 3787 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option>
3744 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> 3788 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option>
3745 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> 3789 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option>
3746 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option> 3790 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option>
3791 <option value="Delta:H(4)C(3)O(2) (K)">Delta:H(4)C(3)O(2) (K)</option>
3747 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option> 3792 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option>
3748 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> 3793 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option>
3749 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> 3794 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option>
3750 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> 3795 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option>
3751 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> 3796 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option>
4314 <option value="Ethanolamine (D)">Ethanolamine (D)</option> 4359 <option value="Ethanolamine (D)">Ethanolamine (D)</option>
4315 <option value="Ethanolamine (E)">Ethanolamine (E)</option> 4360 <option value="Ethanolamine (E)">Ethanolamine (E)</option>
4316 <option value="Ethanolyl (C)">Ethanolyl (C)</option> 4361 <option value="Ethanolyl (C)">Ethanolyl (C)</option>
4317 <option value="Ethanolyl (K)">Ethanolyl (K)</option> 4362 <option value="Ethanolyl (K)">Ethanolyl (K)</option>
4318 <option value="Ethanolyl (R)">Ethanolyl (R)</option> 4363 <option value="Ethanolyl (R)">Ethanolyl (R)</option>
4319 <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option>
4320 <option value="Ethyl (C-term)">Ethyl (C-term)</option> 4364 <option value="Ethyl (C-term)">Ethyl (C-term)</option>
4321 <option value="Ethyl (D)">Ethyl (D)</option> 4365 <option value="Ethyl (D)">Ethyl (D)</option>
4322 <option value="Ethyl (E)">Ethyl (E)</option> 4366 <option value="Ethyl (E)">Ethyl (E)</option>
4323 <option value="Ethyl (K)">Ethyl (K)</option> 4367 <option value="Ethyl (K)">Ethyl (K)</option>
4324 <option value="Ethyl (N-term)">Ethyl (N-term)</option> 4368 <option value="Ethyl (N-term)">Ethyl (N-term)</option>
4408 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option> 4452 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option>
4409 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option> 4453 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option>
4410 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option> 4454 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option>
4411 <option value="Glu (E)">Glu (E)</option> 4455 <option value="Glu (E)">Glu (E)</option>
4412 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option> 4456 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option>
4457 <option value="Glu+O(2) (H)">Glu+O(2) (H)</option>
4413 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option> 4458 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option>
4414 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option> 4459 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option>
4415 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option> 4460 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option>
4416 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option> 4461 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option>
4417 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option> 4462 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option>
4422 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option> 4467 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option>
4423 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option> 4468 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option>
4424 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option> 4469 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option>
4425 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option> 4470 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option>
4426 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option> 4471 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option>
4427 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)</option>
4428 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> 4472 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option>
4429 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option> 4473 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option>
4430 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option> 4474 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option>
4431 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option> 4475 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option>
4432 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option> 4476 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option>
4446 <option value="Gluratylation (K)">Gluratylation (K)</option> 4490 <option value="Gluratylation (K)">Gluratylation (K)</option>
4447 <option value="Glutathione (C)">Glutathione (C)</option> 4491 <option value="Glutathione (C)">Glutathione (C)</option>
4448 <option value="Gly (K)">Gly (K)</option> 4492 <option value="Gly (K)">Gly (K)</option>
4449 <option value="Gly (S)">Gly (S)</option> 4493 <option value="Gly (S)">Gly (S)</option>
4450 <option value="Gly (T)">Gly (T)</option> 4494 <option value="Gly (T)">Gly (T)</option>
4495 <option value="Gly+O(2) (H)">Gly+O(2) (H)</option>
4451 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option> 4496 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option>
4452 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option> 4497 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option>
4453 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option> 4498 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option>
4454 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option> 4499 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option>
4455 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option> 4500 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option>
4836 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option> 4881 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option>
4837 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> 4882 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option>
4838 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> 4883 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option>
4839 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> 4884 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option>
4840 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> 4885 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option>
4886 <option value="Hex(6)HexNAc(5)NeuAc(3) (N)">Hex(6)HexNAc(5)NeuAc(3) (N)</option>
4841 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> 4887 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option>
4842 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> 4888 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option>
4843 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> 4889 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option>
4844 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> 4890 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option>
4845 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> 4891 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option>
4847 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> 4893 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option>
4848 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> 4894 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option>
4849 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> 4895 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option>
4850 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> 4896 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option>
4851 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> 4897 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option>
4898 <option value="Hex(7)HexNAc(6) (N)">Hex(7)HexNAc(6) (N)</option>
4899 <option value="Hex(7)HexNAc(6) (S)">Hex(7)HexNAc(6) (S)</option>
4900 <option value="Hex(7)HexNAc(6) (T)">Hex(7)HexNAc(6) (T)</option>
4852 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> 4901 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option>
4853 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> 4902 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option>
4854 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> 4903 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option>
4855 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> 4904 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option>
4856 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> 4905 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option>
4902 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> 4951 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option>
4903 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> 4952 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option>
4904 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> 4953 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option>
4905 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> 4954 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option>
4906 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> 4955 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option>
4956 <option value="His+O(2) (H)">His+O(2) (H)</option>
4907 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option> 4957 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option>
4908 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option> 4958 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option>
4909 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option> 4959 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option>
4910 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option> 4960 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option>
4911 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option> 4961 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option>
5039 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> 5089 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option>
5040 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option> 5090 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option>
5041 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> 5091 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option>
5042 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> 5092 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option>
5043 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> 5093 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option>
5094 <option value="Kdo (S)">Kdo (S)</option>
5095 <option value="Kdo (T)">Kdo (T)</option>
5044 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> 5096 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option>
5045 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> 5097 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option>
5046 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> 5098 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option>
5047 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> 5099 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option>
5048 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> 5100 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option>
5101 <option value="Label:13C(3)15N(1) (S)">Label:13C(3)15N(1) (S)</option>
5049 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> 5102 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option>
5050 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> 5103 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option>
5051 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> 5104 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option>
5052 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> 5105 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option>
5053 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> 5106 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option>
5128 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option> 5181 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option>
5129 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> 5182 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option>
5130 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> 5183 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option>
5131 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option> 5184 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option>
5132 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> 5185 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option>
5186 <option value="LG-pyrrole (C)">LG-pyrrole (C)</option>
5133 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> 5187 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option>
5134 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> 5188 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option>
5135 <option value="Lipoyl (K)">Lipoyl (K)</option> 5189 <option value="Lipoyl (K)">Lipoyl (K)</option>
5136 <option value="LRGG (K)">LRGG (K)</option> 5190 <option value="LRGG (K)">LRGG (K)</option>
5137 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> 5191 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option>
5138 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> 5192 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option>
5193 <option value="LTX+Lophotoxin (Y)">LTX+Lophotoxin (Y)</option>
5139 <option value="Lys (N-term)">Lys (N-term)</option> 5194 <option value="Lys (N-term)">Lys (N-term)</option>
5195 <option value="Lys+O(2) (H)">Lys+O(2) (H)</option>
5140 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option> 5196 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option>
5141 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option> 5197 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option>
5142 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option> 5198 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option>
5143 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option> 5199 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option>
5144 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option> 5200 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option>
5169 <option value="maleimide5 (C)">maleimide5 (C)</option> 5225 <option value="maleimide5 (C)">maleimide5 (C)</option>
5170 <option value="maleimide5 (K)">maleimide5 (K)</option> 5226 <option value="maleimide5 (K)">maleimide5 (K)</option>
5171 <option value="Malonyl (C)">Malonyl (C)</option> 5227 <option value="Malonyl (C)">Malonyl (C)</option>
5172 <option value="Malonyl (K)">Malonyl (K)</option> 5228 <option value="Malonyl (K)">Malonyl (K)</option>
5173 <option value="Malonyl (S)">Malonyl (S)</option> 5229 <option value="Malonyl (S)">Malonyl (S)</option>
5230 <option value="MBS+peptide (C)">MBS+peptide (C)</option>
5174 <option value="MDCC (C)">MDCC (C)</option> 5231 <option value="MDCC (C)">MDCC (C)</option>
5175 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option> 5232 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option>
5176 <option value="Menadione (C)">Menadione (C)</option> 5233 <option value="Menadione (C)">Menadione (C)</option>
5177 <option value="Menadione (K)">Menadione (K)</option> 5234 <option value="Menadione (K)">Menadione (K)</option>
5178 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option> 5235 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option>
5180 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option> 5237 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option>
5181 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option> 5238 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option>
5182 <option value="MesitylOxide (H)">MesitylOxide (H)</option> 5239 <option value="MesitylOxide (H)">MesitylOxide (H)</option>
5183 <option value="MesitylOxide (K)">MesitylOxide (K)</option> 5240 <option value="MesitylOxide (K)">MesitylOxide (K)</option>
5184 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option> 5241 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option>
5242 <option value="Met+O(2) (H)">Met+O(2) (H)</option>
5185 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option> 5243 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option>
5186 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option> 5244 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option>
5187 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option> 5245 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option>
5188 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option> 5246 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option>
5189 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option> 5247 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option>
5363 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option> 5421 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option>
5364 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option> 5422 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option>
5365 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option> 5423 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option>
5366 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> 5424 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option>
5367 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> 5425 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option>
5368 <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option>
5369 <option value="NP40 (N-term)">NP40 (N-term)</option> 5426 <option value="NP40 (N-term)">NP40 (N-term)</option>
5370 <option value="NQIGG (K)">NQIGG (K)</option> 5427 <option value="NQIGG (K)">NQIGG (K)</option>
5371 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option> 5428 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option>
5372 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option> 5429 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option>
5373 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option> 5430 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option>
5451 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option> 5508 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option>
5452 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option> 5509 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option>
5453 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option> 5510 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option>
5454 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option> 5511 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option>
5455 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option> 5512 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option>
5513 <option value="phenyl-phosphate (K)">phenyl-phosphate (K)</option>
5514 <option value="phenyl-phosphate (S)">phenyl-phosphate (S)</option>
5515 <option value="phenyl-phosphate (T)">phenyl-phosphate (T)</option>
5516 <option value="phenyl-phosphate (Y)">phenyl-phosphate (Y)</option>
5456 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> 5517 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option>
5457 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> 5518 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option>
5458 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> 5519 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option>
5459 <option value="Phospho (C)">Phospho (C)</option> 5520 <option value="Phospho (C)">Phospho (C)</option>
5460 <option value="Phospho (D)">Phospho (D)</option> 5521 <option value="Phospho (D)">Phospho (D)</option>
5465 <option value="Phospho (S)">Phospho (S)</option> 5526 <option value="Phospho (S)">Phospho (S)</option>
5466 <option value="Phospho (T)">Phospho (T)</option> 5527 <option value="Phospho (T)">Phospho (T)</option>
5467 <option value="Phospho (Y)">Phospho (Y)</option> 5528 <option value="Phospho (Y)">Phospho (Y)</option>
5468 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option> 5529 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option>
5469 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option> 5530 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option>
5531 <option value="Phosphoadenosine (S)">Phosphoadenosine (S)</option>
5470 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option> 5532 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option>
5471 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option> 5533 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option>
5472 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option> 5534 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option>
5473 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option> 5535 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option>
5474 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option> 5536 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option>
5496 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option> 5558 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option>
5497 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option> 5559 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option>
5498 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option> 5560 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option>
5499 <option value="Piperidine (K)">Piperidine (K)</option> 5561 <option value="Piperidine (K)">Piperidine (K)</option>
5500 <option value="Piperidine (N-term)">Piperidine (N-term)</option> 5562 <option value="Piperidine (N-term)">Piperidine (N-term)</option>
5563 <option value="Pro+O(2) (H)">Pro+O(2) (H)</option>
5501 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option> 5564 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option>
5502 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option> 5565 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option>
5503 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option> 5566 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option>
5504 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option> 5567 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option>
5505 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option> 5568 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option>
5573 <option value="QEQTGG (K)">QEQTGG (K)</option> 5636 <option value="QEQTGG (K)">QEQTGG (K)</option>
5574 <option value="QQQTGG (K)">QQQTGG (K)</option> 5637 <option value="QQQTGG (K)">QQQTGG (K)</option>
5575 <option value="QTGG (K)">QTGG (K)</option> 5638 <option value="QTGG (K)">QTGG (K)</option>
5576 <option value="Quinone (W)">Quinone (W)</option> 5639 <option value="Quinone (W)">Quinone (W)</option>
5577 <option value="Quinone (Y)">Quinone (Y)</option> 5640 <option value="Quinone (Y)">Quinone (Y)</option>
5641 <option value="RBS-ID_Uridine (A)">RBS-ID_Uridine (A)</option>
5642 <option value="RBS-ID_Uridine (C)">RBS-ID_Uridine (C)</option>
5643 <option value="RBS-ID_Uridine (D)">RBS-ID_Uridine (D)</option>
5644 <option value="RBS-ID_Uridine (E)">RBS-ID_Uridine (E)</option>
5645 <option value="RBS-ID_Uridine (F)">RBS-ID_Uridine (F)</option>
5646 <option value="RBS-ID_Uridine (G)">RBS-ID_Uridine (G)</option>
5647 <option value="RBS-ID_Uridine (H)">RBS-ID_Uridine (H)</option>
5648 <option value="RBS-ID_Uridine (I)">RBS-ID_Uridine (I)</option>
5649 <option value="RBS-ID_Uridine (K)">RBS-ID_Uridine (K)</option>
5650 <option value="RBS-ID_Uridine (L)">RBS-ID_Uridine (L)</option>
5651 <option value="RBS-ID_Uridine (M)">RBS-ID_Uridine (M)</option>
5652 <option value="RBS-ID_Uridine (N)">RBS-ID_Uridine (N)</option>
5653 <option value="RBS-ID_Uridine (P)">RBS-ID_Uridine (P)</option>
5654 <option value="RBS-ID_Uridine (Q)">RBS-ID_Uridine (Q)</option>
5655 <option value="RBS-ID_Uridine (R)">RBS-ID_Uridine (R)</option>
5656 <option value="RBS-ID_Uridine (S)">RBS-ID_Uridine (S)</option>
5657 <option value="RBS-ID_Uridine (T)">RBS-ID_Uridine (T)</option>
5658 <option value="RBS-ID_Uridine (V)">RBS-ID_Uridine (V)</option>
5659 <option value="RBS-ID_Uridine (W)">RBS-ID_Uridine (W)</option>
5660 <option value="RBS-ID_Uridine (Y)">RBS-ID_Uridine (Y)</option>
5578 <option value="Retinylidene (K)">Retinylidene (K)</option> 5661 <option value="Retinylidene (K)">Retinylidene (K)</option>
5579 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> 5662 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option>
5580 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> 5663 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option>
5581 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> 5664 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option>
5582 <option value="RNPXlink2 (F)">RNPXlink2 (F)</option>
5583 <option value="RNPXlink2 (K)">RNPXlink2 (K)</option>
5584 <option value="RNPXlink2 (L)">RNPXlink2 (L)</option>
5585 <option value="RNPXlink3 (C)">RNPXlink3 (C)</option>
5586 <option value="RNPXlink3 (F)">RNPXlink3 (F)</option>
5587 <option value="RNPXlink4 (C)">RNPXlink4 (C)</option>
5588 <option value="RNPXlink5 (F)">RNPXlink5 (F)</option>
5589 <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option>
5590 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> 5665 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option>
5591 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> 5666 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option>
5592 <option value="Saligenin (H)">Saligenin (H)</option> 5667 <option value="Saligenin (H)">Saligenin (H)</option>
5593 <option value="Saligenin (K)">Saligenin (K)</option> 5668 <option value="Saligenin (K)">Saligenin (K)</option>
5594 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option> 5669 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option>
5612 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option> 5687 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option>
5613 <option value="serotonylation (Q)">serotonylation (Q)</option> 5688 <option value="serotonylation (Q)">serotonylation (Q)</option>
5614 <option value="shTMT (K)">shTMT (K)</option> 5689 <option value="shTMT (K)">shTMT (K)</option>
5615 <option value="shTMT (N-term)">shTMT (N-term)</option> 5690 <option value="shTMT (N-term)">shTMT (N-term)</option>
5616 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option> 5691 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option>
5692 <option value="shTMTpro (K)">shTMTpro (K)</option>
5693 <option value="shTMTpro (N-term)">shTMTpro (N-term)</option>
5694 <option value="shTMTpro (Protein N-term)">shTMTpro (Protein N-term)</option>
5617 <option value="SMA (K)">SMA (K)</option> 5695 <option value="SMA (K)">SMA (K)</option>
5618 <option value="SMA (N-term)">SMA (N-term)</option> 5696 <option value="SMA (N-term)">SMA (N-term)</option>
5619 <option value="spermidine (Q)">spermidine (Q)</option> 5697 <option value="spermidine (Q)">spermidine (Q)</option>
5620 <option value="spermine (Q)">spermine (Q)</option> 5698 <option value="spermine (Q)">spermine (Q)</option>
5621 <option value="SPITC (K)">SPITC (K)</option> 5699 <option value="SPITC (K)">SPITC (K)</option>
5787 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option> 5865 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option>
5788 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option> 5866 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option>
5789 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option> 5867 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option>
5790 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option> 5868 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option>
5791 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option> 5869 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option>
5792 <option value="Ub-amide (C)">Ub-amide (C)</option>
5793 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> 5870 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option>
5794 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> 5871 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option>
5795 <option value="Ub-VME (C)">Ub-VME (C)</option> 5872 <option value="Ub-VME (C)">Ub-VME (C)</option>
5796 <option value="UgiJoullie (D)">UgiJoullie (D)</option> 5873 <option value="UgiJoullie (D)">UgiJoullie (D)</option>
5797 <option value="UgiJoullie (E)">UgiJoullie (E)</option> 5874 <option value="UgiJoullie (E)">UgiJoullie (E)</option>
5982 <option value="ZGB (K)">ZGB (K)</option> 6059 <option value="ZGB (K)">ZGB (K)</option>
5983 <option value="ZGB (N-term)">ZGB (N-term)</option> 6060 <option value="ZGB (N-term)">ZGB (N-term)</option>
5984 <option value="ZQG (K)">ZQG (K)</option> 6061 <option value="ZQG (K)">ZQG (K)</option>
5985 <expand macro="list_string_san" name="variable"/> 6062 <expand macro="list_string_san" name="variable"/>
5986 </param> 6063 </param>
5987 <param name="variable_max_per_peptide" argument="-modifications:variable_max_per_peptide" type="integer" optional="true" value="3" label="Maximum number of residues carrying a variable modification per candidate peptide" help=""/> 6064 <param name="variable_max_per_peptide" argument="-modifications:variable_max_per_peptide" type="integer" value="3" label="Maximum number of residues carrying a variable modification per candidate peptide" help=""/>
5988 </section> 6065 </section>
5989 <section name="peptide" title="Settings for digesting proteins into peptides" help="" expanded="false"> 6066 <section name="peptide" title="Settings for digesting proteins into peptides" help="" expanded="false">
5990 <param name="min_size" argument="-peptide:min_size" type="integer" optional="true" value="5" label="Minimum size a peptide must have after digestion to be considered in the search" help=""/> 6067 <param name="min_size" argument="-peptide:min_size" type="integer" value="5" label="Minimum size a peptide must have after digestion to be considered in the search" help=""/>
5991 <param name="missed_cleavages" argument="-peptide:missed_cleavages" type="integer" optional="true" value="3" label="Number of missed cleavages" help=""/> 6068 <param name="missed_cleavages" argument="-peptide:missed_cleavages" type="integer" value="3" label="Number of missed cleavages" help=""/>
5992 <param name="enzyme" argument="-peptide:enzyme" type="select" optional="true" label="The enzyme used for peptide digestion" help=""> 6069 <param name="enzyme" argument="-peptide:enzyme" type="select" label="The enzyme used for peptide digestion" help="">
5993 <option value="Trypsin" selected="true">Trypsin</option>
5994 <option value="Asp-N_ambic">Asp-N_ambic</option>
5995 <option value="Chymotrypsin">Chymotrypsin</option>
5996 <option value="Lys-C">Lys-C</option>
5997 <option value="Lys-N">Lys-N</option>
5998 <option value="2-iodobenzoate">2-iodobenzoate</option>
5999 <option value="iodosobenzoate">iodosobenzoate</option>
6000 <option value="staphylococcal protease/D">staphylococcal protease/D</option>
6001 <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
6002 <option value="Glu-C+P">Glu-C+P</option>
6003 <option value="PepsinA + P">PepsinA + P</option> 6070 <option value="PepsinA + P">PepsinA + P</option>
6004 <option value="cyanogen-bromide">cyanogen-bromide</option> 6071 <option value="cyanogen-bromide">cyanogen-bromide</option>
6005 <option value="Clostripain/P">Clostripain/P</option> 6072 <option value="Clostripain/P">Clostripain/P</option>
6006 <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option> 6073 <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option>
6007 <option value="no cleavage">no cleavage</option> 6074 <option value="no cleavage">no cleavage</option>
6008 <option value="unspecific cleavage">unspecific cleavage</option> 6075 <option value="unspecific cleavage">unspecific cleavage</option>
6009 <option value="TrypChymo">TrypChymo</option> 6076 <option value="Asp-N/B">Asp-N/B</option>
6010 <option value="Trypsin/P">Trypsin/P</option> 6077 <option value="Asp-N_ambic">Asp-N_ambic</option>
6078 <option value="Chymotrypsin">Chymotrypsin</option>
6079 <option value="Chymotrypsin/P">Chymotrypsin/P</option>
6080 <option value="CNBr">CNBr</option>
6011 <option value="V8-DE">V8-DE</option> 6081 <option value="V8-DE">V8-DE</option>
6012 <option value="V8-E">V8-E</option> 6082 <option value="V8-E">V8-E</option>
6013 <option value="Lys-C/P">Lys-C/P</option>
6014 <option value="PepsinA">PepsinA</option>
6015 <option value="leukocyte elastase">leukocyte elastase</option> 6083 <option value="leukocyte elastase">leukocyte elastase</option>
6016 <option value="proline endopeptidase">proline endopeptidase</option> 6084 <option value="proline endopeptidase">proline endopeptidase</option>
6017 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> 6085 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
6018 <option value="Alpha-lytic protease">Alpha-lytic protease</option> 6086 <option value="TrypChymo">TrypChymo</option>
6087 <option value="Trypsin/P">Trypsin/P</option>
6019 <option value="Arg-C">Arg-C</option> 6088 <option value="Arg-C">Arg-C</option>
6020 <option value="Arg-C/P">Arg-C/P</option> 6089 <option value="Arg-C/P">Arg-C/P</option>
6021 <option value="Asp-N">Asp-N</option> 6090 <option value="Asp-N">Asp-N</option>
6022 <option value="Asp-N/B">Asp-N/B</option> 6091 <option value="Trypsin" selected="true">Trypsin</option>
6023 <option value="Chymotrypsin/P">Chymotrypsin/P</option> 6092 <option value="Alpha-lytic protease">Alpha-lytic protease</option>
6024 <option value="CNBr">CNBr</option> 6093 <option value="2-iodobenzoate">2-iodobenzoate</option>
6094 <option value="iodosobenzoate">iodosobenzoate</option>
6095 <option value="staphylococcal protease/D">staphylococcal protease/D</option>
6096 <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
6097 <option value="Glu-C+P">Glu-C+P</option>
6025 <option value="Formic_acid">Formic_acid</option> 6098 <option value="Formic_acid">Formic_acid</option>
6099 <option value="Lys-C">Lys-C</option>
6100 <option value="Lys-N">Lys-N</option>
6101 <option value="Lys-C/P">Lys-C/P</option>
6102 <option value="PepsinA">PepsinA</option>
6026 <expand macro="list_string_san" name="enzyme"/> 6103 <expand macro="list_string_san" name="enzyme"/>
6027 </param> 6104 </param>
6028 </section> 6105 </section>
6029 <section name="cross_linker" title="Description of the cross-linker reagent" help="" expanded="false"> 6106 <section name="cross_linker" title="Description of the cross-linker reagent" help="" expanded="false">
6030 <param name="residue1" argument="-cross_linker:residue1" type="text" optional="true" value="K N-term" label="Comma separated residues, that the first side of a bifunctional cross-linker can attach to" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)"> 6107 <param name="residue1" argument="-cross_linker:residue1" type="text" value="K N-term" label="Comma separated residues, that the first side of a bifunctional cross-linker can attach to" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)">
6031 <expand macro="list_string_val" name="residue1"/> 6108 <expand macro="list_string_val" name="residue1"/>
6032 <expand macro="list_string_san" name="residue1"/> 6109 <expand macro="list_string_san" name="residue1"/>
6033 </param> 6110 </param>
6034 <param name="residue2" argument="-cross_linker:residue2" type="text" optional="true" value="K N-term" label="Comma separated residues, that the second side of a bifunctional cross-linker can attach to" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)"> 6111 <param name="residue2" argument="-cross_linker:residue2" type="text" value="K N-term" label="Comma separated residues, that the second side of a bifunctional cross-linker can attach to" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)">
6035 <expand macro="list_string_val" name="residue2"/> 6112 <expand macro="list_string_val" name="residue2"/>
6036 <expand macro="list_string_san" name="residue2"/> 6113 <expand macro="list_string_san" name="residue2"/>
6037 </param> 6114 </param>
6038 <param name="mass_light" argument="-cross_linker:mass_light" type="float" optional="true" value="138.0680796" label="Mass of the light cross-linker, linking two residues on one or two peptides" help=""/> 6115 <param name="mass_light" argument="-cross_linker:mass_light" type="float" value="138.0680796" label="Mass of the light cross-linker, linking two residues on one or two peptides" help=""/>
6039 <param name="mass_iso_shift" argument="-cross_linker:mass_iso_shift" type="float" optional="true" value="12.075321" label="Mass of the isotopic shift between the light and heavy linkers" help=""/> 6116 <param name="mass_iso_shift" argument="-cross_linker:mass_iso_shift" type="float" value="12.075321" label="Mass of the isotopic shift between the light and heavy linkers" help=""/>
6040 <param name="mass_mono_link" argument="-cross_linker:mass_mono_link" type="text" optional="true" value="156.07864431 155.094628715" label="Possible masses of the linker, when attached to only one peptide" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)"> 6117 <param name="mass_mono_link" argument="-cross_linker:mass_mono_link" type="text" value="156.07864431 155.094628715" label="Possible masses of the linker, when attached to only one peptide" help=" (space separated list, in order to allow for spaces in list items surround them by single quotes)">
6041 <expand macro="list_float_valsan" name="mass_mono_link"/> 6118 <expand macro="list_float_valsan" name="mass_mono_link"/>
6042 </param> 6119 </param>
6043 <param name="name" argument="-cross_linker:name" type="text" optional="true" value="DSS" label="Name of the searched cross-link, used to resolve ambiguity of equal masses" help="(e.g. DSS or BS3)"> 6120 <param name="name" argument="-cross_linker:name" type="text" value="DSS" label="Name of the searched cross-link, used to resolve ambiguity of equal masses" help="(e.g. DSS or BS3)">
6044 <expand macro="list_string_san" name="name"/> 6121 <expand macro="list_string_san" name="name"/>
6045 </param> 6122 </param>
6046 </section> 6123 </section>
6047 <section name="algorithm" title="Additional algorithm settings" help="" expanded="false"> 6124 <section name="algorithm" title="Additional algorithm settings" help="" expanded="false">
6048 <param name="number_top_hits" argument="-algorithm:number_top_hits" type="integer" optional="true" value="1" label="Number of top hits reported for each spectrum pai" help=""/> 6125 <param name="number_top_hits" argument="-algorithm:number_top_hits" type="integer" value="1" label="Number of top hits reported for each spectrum pai" help=""/>
6049 <param name="deisotope" argument="-algorithm:deisotope" type="select" optional="true" label="Set to true, if the input spectra should be deisotoped before any other processing steps" help="If set to auto the spectra will be deisotoped, if the fragment mass tolerance is &lt; 0.1 Da or &lt; 100 ppm (0.1 Da at a mass of 1000)"> 6126 <param name="deisotope" argument="-algorithm:deisotope" type="select" label="Set to true, if the input spectra should be deisotoped before any other processing steps" help="If set to auto the spectra will be deisotoped, if the fragment mass tolerance is &lt; 0.1 Da or &lt; 100 ppm (0.1 Da at a mass of 1000)">
6050 <option value="true">true</option> 6127 <option value="true">true</option>
6051 <option value="false">false</option> 6128 <option value="false">false</option>
6052 <option value="auto" selected="true">auto</option> 6129 <option value="auto" selected="true">auto</option>
6053 <expand macro="list_string_san" name="deisotope"/> 6130 <expand macro="list_string_san" name="deisotope"/>
6054 </param> 6131 </param>
6063 <param name="neutral_losses" argument="-ions:neutral_losses" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Search for neutral losses of H2O and H3N" help=""/> 6140 <param name="neutral_losses" argument="-ions:neutral_losses" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Search for neutral losses of H2O and H3N" help=""/>
6064 </section> 6141 </section>
6065 <expand macro="adv_opts_macro"> 6142 <expand macro="adv_opts_macro">
6066 <param argument="-decoy_database" type="data" format="fasta" optional="true" label="Input file containing the decoy protein database" help="Decoys can also be included in the normal database file instead (or additionally) select fasta data sets(s)"/> 6143 <param argument="-decoy_database" type="data" format="fasta" optional="true" label="Input file containing the decoy protein database" help="Decoys can also be included in the normal database file instead (or additionally) select fasta data sets(s)"/>
6067 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> 6144 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
6068 <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 6145 <param argument="-test" type="hidden" value="False" label="Enables the test mode (needed for internal use only)" help="" optional="true">
6069 <expand macro="list_string_san" name="test"/> 6146 <expand macro="list_string_san" name="test"/>
6070 </param> 6147 </param>
6071 </expand> 6148 </expand>
6072 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> 6149 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
6073 <option value="out_idXML_FLAG">out_idXML (Results in idXML format (at least one of these output parameters should be set, otherwise you will not have any results))</option> 6150 <option value="out_idXML_FLAG">out_idXML (Results in idXML format (at least one of these output parameters should be set, otherwise you will not have any results))</option>
6095 </data> 6172 </data>
6096 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd"> 6173 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd">
6097 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> 6174 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter>
6098 </data> 6175 </data>
6099 </outputs> 6176 </outputs>
6100 <tests><!-- TOPP_OpenPepXL_1 --> 6177 <tests>
6178 <!-- TOPP_OpenPepXL_1 -->
6101 <test expect_num_outputs="5"> 6179 <test expect_num_outputs="5">
6102 <section name="adv_opts"> 6180 <section name="adv_opts">
6103 <param name="force" value="false"/> 6181 <param name="force" value="false"/>
6104 <param name="test" value="true"/> 6182 <param name="test" value="true"/>
6105 </section> 6183 </section>
6106 <param name="in" value="OpenPepXL_input.mzML"/> 6184 <param name="in" value="OpenPepXL_input.mzML"/>
6107 <param name="consensus" value="OpenPepXL_input.consensusXML"/> 6185 <param name="consensus" value="OpenPepXL_input.consensusXML"/>
6108 <param name="database" value="OpenPepXL_input.fasta"/> 6186 <param name="database" value="OpenPepXL_input.fasta"/>
6109 <param name="decoy_string" value="decoy_"/> 6187 <param name="decoy_string" value="decoy_"/>
6110 <param name="decoy_prefix" value="true"/> 6188 <param name="decoy_prefix" value="true"/>
6111 <output name="out_idXML" file="OpenPepXL_output.idXML" compare="sim_size" delta_frac="0.7" ftype="idxml"/> 6189 <output name="out_idXML" value="OpenPepXL_output.idXML" compare="sim_size" delta_frac="0.7" ftype="idxml"/>
6112 <output name="out_mzIdentML" file="OpenPepXL_output.mzid" compare="sim_size" delta_frac="0.7" ftype="mzid"/> 6190 <output name="out_mzIdentML" value="OpenPepXL_output.mzid" compare="sim_size" delta_frac="0.7" ftype="mzid"/>
6113 <output name="out_xquestxml" file="OpenPepXL_output.xquest.xml" compare="sim_size" delta_frac="0.7" ftype="xquest.xml"/> 6191 <output name="out_xquestxml" value="OpenPepXL_output.xquest.xml" compare="sim_size" delta_frac="0.7" ftype="xquest.xml"/>
6114 <output name="out_xquest_specxml" file="OpenPepXL_output.spec.xml" compare="sim_size" delta_frac="0.7" ftype="spec.xml"/> 6192 <output name="out_xquest_specxml" value="OpenPepXL_output.spec.xml.tmp" compare="sim_size" delta_frac="0.7" ftype="spec.xml"/>
6115 <section name="precursor"> 6193 <section name="precursor">
6116 <param name="mass_tolerance" value="10.0"/> 6194 <param name="mass_tolerance" value="10.0"/>
6117 <param name="mass_tolerance_unit" value="ppm"/> 6195 <param name="mass_tolerance_unit" value="ppm"/>
6118 <param name="min_charge" value="2"/> 6196 <param name="min_charge" value="2"/>
6119 <param name="max_charge" value="8"/> 6197 <param name="max_charge" value="8"/>
6159 <output name="ctd_out" ftype="xml"> 6237 <output name="ctd_out" ftype="xml">
6160 <assert_contents> 6238 <assert_contents>
6161 <is_valid_xml/> 6239 <is_valid_xml/>
6162 </assert_contents> 6240 </assert_contents>
6163 </output> 6241 </output>
6242 <assert_stdout>
6243 <has_text_matching expression="@EXECUTABLE@ took .* \(wall\), .* \(CPU\), .* \(system\), .* \(user\)(; Peak Memory Usage: 32 MB)?."/>
6244 </assert_stdout>
6164 </test> 6245 </test>
6165 </tests> 6246 </tests>
6166 <help><![CDATA[Tool for protein-protein cross-linking identification using labeled linkers. 6247 <help><![CDATA[Tool for protein-protein cross-linking identification using labeled linkers.
6167 6248
6168 6249
6169 For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/TOPP_OpenPepXL.html]]></help> 6250 For more information, visit https://openms.de/doxygen/release/3.1.0/html/TOPP_OpenPepXL.html]]></help>
6170 <expand macro="references"/> 6251 <expand macro="references"/>
6171 </tool> 6252 </tool>