diff OpenPepXLLF.xml @ 2:44d9ef025505 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/OpenPepXLLF.xml	Tue Mar 20 14:35:20 2018 -0400
+++ b/OpenPepXLLF.xml	Wed May 15 07:59:37 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenPepXLLF
+  <command detect_errors="aggressive"><![CDATA[OpenPepXLLF
 
 #if $param_in:
   -in $param_in
@@ -156,7 +156,7 @@
   -precursor:max_charge $adv_opts.param_precursor_max_charge
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input file containing the spectra" help="(-in) "/>
     <param name="param_database" type="data" format="fasta" optional="False" label="Input file containing the protein database" help="(-database) "/>
@@ -5332,5 +5332,5 @@
   <help>Tool for protein-protein cross linking with label-free linkers.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenPepXLLF.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenPepXLLF.html</help>
 </tool>