Mercurial > repos > galaxyp > openms_openswathconfidencescoring
view OMSSAAdapter.patch @ 11:fa73919cc97e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
---|---|
date | Tue, 13 Oct 2020 20:18:53 +0000 |
parents | 401b29d0f88c |
children |
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--- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200 @@ -22,6 +22,7 @@ mkdir database && ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && ## Main program call set -o pipefail &&