Mercurial > repos > galaxyp > openms_openswathdecoygenerator
comparison OpenSwathDecoyGenerator.xml @ 7:5cc0f0e55785 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Fri, 17 May 2019 04:51:51 -0400 |
parents | 829f134aab22 |
children | 1814187218fe |
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6:5e1e666e1228 | 7:5cc0f0e55785 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>OpenSwathDecoyGenerator | 13 <command detect_errors="aggressive"><![CDATA[OpenSwathDecoyGenerator |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
69 #if $adv_opts.adv_opts_selector=='advanced': | 69 #if $adv_opts.adv_opts_selector=='advanced': |
70 #if $adv_opts.param_force: | 70 #if $adv_opts.param_force: |
71 -force | 71 -force |
72 #end if | 72 #end if |
73 #end if | 73 #end if |
74 </command> | 74 ]]></command> |
75 <inputs> | 75 <inputs> |
76 <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/> | 76 <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/> |
77 <param name="param_method" type="text" size="30" value="shuffle" label="decoy generation method ('shuffle','pseudo-reverse','reverse','shift')" help="(-method) "> | 77 <param name="param_method" type="text" size="30" value="shuffle" label="decoy generation method ('shuffle','pseudo-reverse','reverse','shift')" help="(-method) "> |
78 <sanitizer> | 78 <sanitizer> |
79 <valid initial="string.printable"> | 79 <valid initial="string.printable"> |
126 <data name="param_out" format="traml"/> | 126 <data name="param_out" format="traml"/> |
127 </outputs> | 127 </outputs> |
128 <help>Generates decoys according to different models for a specific TraML | 128 <help>Generates decoys according to different models for a specific TraML |
129 | 129 |
130 | 130 |
131 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathDecoyGenerator.html</help> | 131 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathDecoyGenerator.html</help> |
132 </tool> | 132 </tool> |