diff OpenSwathDIAPreScoring.xml @ 7:9bf5470fb0bc draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/OpenSwathDIAPreScoring.xml	Tue Mar 20 15:06:21 2018 -0400
+++ b/OpenSwathDIAPreScoring.xml	Fri May 17 04:42:22 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenSwathDIAPreScoring
+  <command detect_errors="aggressive"><![CDATA[OpenSwathDIAPreScoring
 
 #if $param_tr:
   -tr $param_tr
@@ -30,7 +30,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_tr" type="data" format="traml" optional="False" label="transition file" help="(-tr) "/>
     <param name="param_swath_files" type="data" format="mzml" multiple="true" optional="True" size="30" label="Swath files that were used to extract the transitions" help="(-swath_files) If present, SWATH specific scoring will be applied">
@@ -52,5 +52,5 @@
   <help>Scoring spectra using the DIA scores.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathDIAPreScoring.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathDIAPreScoring.html</help>
 </tool>