Mercurial > repos > galaxyp > openms_openswathfilesplitter
view OpenSwathFileSplitter.xml @ 8:8b814eafce2c draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author | galaxyp |
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date | Fri, 17 May 2019 09:58:11 -0400 |
parents | 508e1f473cfe |
children | 0ab17cc5cf0c |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Targeted Experiments]--> <tool id="OpenSwathFileSplitter" name="OpenSwathFileSplitter" version="2.3.0"> <description>Splits SWATH files into n files, each containing one window.</description> <macros> <token name="@EXECUTABLE@">OpenSwathFileSplitter</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[OpenSwathFileSplitter -in #for token in $param_in: $token #end for #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_outputDirectory: -outputDirectory "$adv_opts.param_outputDirectory" #end if #if $adv_opts.param_force: -force #end if #end if > $param_stdout ]]></command> <inputs> <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input file (SWATH/DIA file)" help="(-in) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <expand macro="advanced_options"> <param name="param_outputDirectory" type="text" size="30" value="./" label="Output path to store the split files" help="(-outputDirectory) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_stdout" format="txt" label="Output from stdout"/> </outputs> <help>Splits SWATH files into n files, each containing one window. For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathFileSplitter.html</help> </tool>