Mercurial > repos > galaxyp > openms_openswathmzmlfilecacher
comparison OpenSwathMzMLFileCacher.xml @ 11:fc775d5aa321 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
---|---|
date | Tue, 13 Oct 2020 20:00:16 +0000 |
parents | e7c43d17e3dc |
children | f82b320ceb90 |
comparison
equal
deleted
inserted
replaced
10:28a6bc00f369 | 11:fc775d5aa321 |
---|---|
51 <param name="full_meta" argument="-full_meta" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Write full meta information into sqMass file (may require large amounts of memory)" help=""/> | 51 <param name="full_meta" argument="-full_meta" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Write full meta information into sqMass file (may require large amounts of memory)" help=""/> |
52 <expand macro="adv_opts_macro"> | 52 <expand macro="adv_opts_macro"> |
53 <param name="lossy_mass_accuracy" argument="-lossy_mass_accuracy" type="float" optional="true" value="-1.0" label="Desired (absolute) m/z accuracy for lossy compression" help="(e.g. use 0.0001 for a mass accuracy of 0.2 ppm at 500 m/z, default uses -1.0 for maximal accuracy)"/> | 53 <param name="lossy_mass_accuracy" argument="-lossy_mass_accuracy" type="float" optional="true" value="-1.0" label="Desired (absolute) m/z accuracy for lossy compression" help="(e.g. use 0.0001 for a mass accuracy of 0.2 ppm at 500 m/z, default uses -1.0 for maximal accuracy)"/> |
54 <param name="process_lowmemory" argument="-process_lowmemory" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Whether to process the file on the fly without loading the whole file into memory first (only for conversions of mzXML/mzML to mzML)" help="Note: this flag will prevent conversion from spectra to chromatograms"/> | 54 <param name="process_lowmemory" argument="-process_lowmemory" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Whether to process the file on the fly without loading the whole file into memory first (only for conversions of mzXML/mzML to mzML)" help="Note: this flag will prevent conversion from spectra to chromatograms"/> |
55 <param name="lowmem_batchsize" argument="-lowmem_batchsize" type="integer" optional="true" min="0" value="500" label="The batch size of the low memory conversion" help=""/> | 55 <param name="lowmem_batchsize" argument="-lowmem_batchsize" type="integer" optional="true" min="0" value="500" label="The batch size of the low memory conversion" help=""/> |
56 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 56 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
57 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 57 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
58 <expand macro="list_string_san"/> | 58 <expand macro="list_string_san"/> |
59 </param> | 59 </param> |
60 </expand> | 60 </expand> |
61 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 61 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
62 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 62 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
63 </param> | 63 </param> |
64 </inputs> | 64 </inputs> |
65 <outputs> | 65 <outputs> |
66 <data name="out" label="${tool.name} on ${on_string}: out"> | 66 <data name="out" label="${tool.name} on ${on_string}: out"> |
78 <expand macro="manutest_OpenSwathMzMLFileCacher"/> | 78 <expand macro="manutest_OpenSwathMzMLFileCacher"/> |
79 </tests> | 79 </tests> |
80 <help><![CDATA[This tool caches the spectra and chromatogram data of an mzML to disk. | 80 <help><![CDATA[This tool caches the spectra and chromatogram data of an mzML to disk. |
81 | 81 |
82 | 82 |
83 For more information, visit http://www.openms.de/documentation/UTILS_OpenSwathMzMLFileCacher.html]]></help> | 83 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_OpenSwathMzMLFileCacher.html]]></help> |
84 <expand macro="references"/> | 84 <expand macro="references"/> |
85 </tool> | 85 </tool> |