Mercurial > repos > galaxyp > openms_openswathmzmlfilecacher
view OpenSwathMzMLFileCacher.xml @ 8:05ec9fb05ed1 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author | galaxyp |
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date | Fri, 17 May 2019 09:44:13 -0400 |
parents | b5121b003599 |
children | e7c43d17e3dc |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Targeted Experiments]--> <tool id="OpenSwathMzMLFileCacher" name="OpenSwathMzMLFileCacher" version="2.3.0"> <description>This tool caches the spectra and chromatogram data of an mzML to disk.</description> <macros> <token name="@EXECUTABLE@">OpenSwathMzMLFileCacher</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[OpenSwathMzMLFileCacher #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_out_type: -out_type #if " " in str($param_out_type): "$param_out_type" #else $param_out_type #end if #end if #if $param_convert_back: -convert_back #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if ]]></command> <inputs> <param name="param_in" type="data" format="mzml,sqMass" optional="False" label="Input mzML file" help="(-in) "/> <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content <br>Note: that not all conversion paths work or make sense" help="(-out_type) "> <option value="mzML">mzML</option> <option value="sqMass">sqMass</option> </param> <param name="param_convert_back" display="radio" type="boolean" truevalue="-convert_back" falsevalue="" checked="false" optional="True" label="Convert back to mzML" help="(-convert_back) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>This tool caches the spectra and chromatogram data of an mzML to disk. For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathMzMLFileCacher.html</help> </tool>