diff OpenSwathRewriteToFeatureXML.xml @ 11:5ad2d341fb2f draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

--- a/OpenSwathRewriteToFeatureXML.xml	Thu Sep 24 12:32:53 2020 +0000
+++ b/OpenSwathRewriteToFeatureXML.xml	Tue Oct 13 20:31:19 2020 +0000
@@ -53,12 +53,12 @@
     <param name="featureXML" argument="-featureXML" type="data" format="featurexml" optional="false" label="input featureXML file" help=" select featurexml data sets(s)"/>
     <param name="FDR_cutoff" argument="-FDR_cutoff" type="float" optional="true" value="-1.0" label="FDR cutoff" help="(e.g. to remove all features with a an m_score above 0.05 use 0.05 here)"/>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -75,6 +75,6 @@
   <help><![CDATA[Combines featureXML and mProphet tsv to FDR filtered featureXML.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_OpenSwathRewriteToFeatureXML.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_OpenSwathRewriteToFeatureXML.html]]></help>
   <expand macro="references"/>
 </tool>