Mercurial > repos > galaxyp > openms_openswathrewritetofeaturexml
diff OpenSwathRewriteToFeatureXML.xml @ 11:5ad2d341fb2f draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
---|---|
date | Tue, 13 Oct 2020 20:31:19 +0000 |
parents | 175016416031 |
children | b956337a7473 |
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--- a/OpenSwathRewriteToFeatureXML.xml Thu Sep 24 12:32:53 2020 +0000 +++ b/OpenSwathRewriteToFeatureXML.xml Tue Oct 13 20:31:19 2020 +0000 @@ -53,12 +53,12 @@ <param name="featureXML" argument="-featureXML" type="data" format="featurexml" optional="false" label="input featureXML file" help=" select featurexml data sets(s)"/> <param name="FDR_cutoff" argument="-FDR_cutoff" type="float" optional="true" value="-1.0" label="FDR cutoff" help="(e.g. to remove all features with a an m_score above 0.05 use 0.05 here)"/> <expand macro="adv_opts_macro"> - <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> + <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> <expand macro="list_string_san"/> </param> </expand> - <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> + <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> </param> </inputs> @@ -75,6 +75,6 @@ <help><![CDATA[Combines featureXML and mProphet tsv to FDR filtered featureXML. -For more information, visit http://www.openms.de/documentation/UTILS_OpenSwathRewriteToFeatureXML.html]]></help> +For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_OpenSwathRewriteToFeatureXML.html]]></help> <expand macro="references"/> </tool>