comparison OpenSwathRTNormalizer.xml @ 7:d9747fc216e9 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

6:f01f84cbd265

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>OpenSwathRTNormalizer

-in
  #for token in $param_in:
    $token
  #end for

#end if
    #if $adv_opts.param_algorithm_Scores_use_uis_scores:
  -algorithm:Scores:use_uis_scores
#end if
#end if
</command>
  <inputs>
    <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>

    <data name="param_out" format="trafoxml"/>
  </outputs>
  <help>This tool will take a description of RT peptides and their normalized retention time to write out a transformation file on how to transform the RT space into the normalized space.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathRTNormalizer.html</help>
</tool>

7:d9747fc216e9

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[OpenSwathRTNormalizer

-in
  #for token in $param_in:
    $token
  #end for

#end if
    #if $adv_opts.param_algorithm_Scores_use_uis_scores:
  -algorithm:Scores:use_uis_scores
#end if
#end if
]]></command>
  <inputs>
    <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>

    <data name="param_out" format="trafoxml"/>
  </outputs>
  <help>This tool will take a description of RT peptides and their normalized retention time to write out a transformation file on how to transform the RT space into the normalized space.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathRTNormalizer.html</help>
</tool>