Mercurial > repos > galaxyp > openms_openswathworkflow

diff OpenSwathWorkflow.xml @ 7:091d4e82839a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:30:28 -0400
parents 56988709dec6
children 3967f7cf35b9
line wrap: on
line diff
--- a/OpenSwathWorkflow.xml	Tue Mar 20 15:00:43 2018 -0400
+++ b/OpenSwathWorkflow.xml	Wed May 15 08:30:28 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenSwathWorkflow
+  <command detect_errors="aggressive"><![CDATA[OpenSwathWorkflow
 
 -in
   #for token in $param_in:
@@ -399,7 +399,7 @@
   -Scoring:Scores:use_uis_scores
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
       <sanitizer>
@@ -594,5 +594,5 @@
   <help>Complete workflow to run OpenSWATH
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathWorkflow.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathWorkflow.html</help>
 </tool>