Mercurial > repos > galaxyp > openms_openswathworkflow

diff OpenSwathWorkflow.xml @ 10:887be35bc42e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author galaxyp
date Thu, 24 Sep 2020 12:05:36 +0000
parents 3967f7cf35b9
children 48e2d8b51c8a
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--- a/OpenSwathWorkflow.xml	Wed Sep 09 12:46:48 2020 +0000
+++ b/OpenSwathWorkflow.xml	Thu Sep 24 12:05:36 2020 +0000
@@ -160,7 +160,6 @@
     <param name="mz_extraction_window" argument="-mz_extraction_window" type="float" optional="true" min="0.0" value="0.05" label="Extraction window in Thomson or ppm (see mz_extraction_window_unit)" help=""/>
     <param name="mz_extraction_window_ms1" argument="-mz_extraction_window_ms1" type="float" optional="true" min="0.0" value="0.05" label="Extraction window used in MS1 in Thomson or ppm (see mz_extraction_window_ms1_unit)" help=""/>
     <param name="im_extraction_window_ms1" argument="-im_extraction_window_ms1" type="float" optional="true" value="-1.0" label="Extraction window in ion mobility dimension for MS1 (in milliseconds)" help=""/>
-    <section name="Debugging" title="Debugging" help="" expanded="false"/>
     <section name="Calibration" title="Parameters for the m/z and ion mobility calibration" help="" expanded="false">
       <param name="ms1_im_calibration" argument="-Calibration:ms1_im_calibration" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Whether to use MS1 precursor data for the ion mobility calibration (default = false, uses MS2 / fragment ions for calibration)" help=""/>
       <param name="im_correction_function" argument="-Calibration:im_correction_function" display="radio" type="select" optional="false" label="Type of normalization function for IM calibration" help="">