Mercurial > repos > galaxyp > openms_pepnovoadapter
comparison OMSSAAdapter.patch @ 0:ae0d71611437 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
| author | galaxyp |
|---|---|
| date | Wed, 09 Sep 2020 12:43:49 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:ae0d71611437 |
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| 1 --- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200 | |
| 2 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200 | |
| 3 @@ -22,6 +22,7 @@ | |
| 4 mkdir database && | |
| 5 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && | |
| 6 | |
| 7 +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && | |
| 8 ## Main program call | |
| 9 | |
| 10 set -o pipefail && |