Mercurial > repos > galaxyp > openms_pepnovoadapter

comparison OMSSAAdapter.patch @ 4:533859c7e75f draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author galaxyp
date Thu, 01 Dec 2022 19:18:33 +0000
parents e570599ec9f2
children
comparison
equal deleted inserted replaced
3:e570599ec9f2 4:533859c7e75f
1 --- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200
2 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200
3 @@ -22,6 +22,7 @@
4 mkdir database &&
5 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
6
7 +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
8 ## Main program call
9
10 set -o pipefail &&