Mercurial > repos > galaxyp > openms_precursorionselector
diff PrecursorIonSelector.xml @ 1:828f4c70d584 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author | galaxyp |
---|---|
date | Wed, 09 Aug 2017 09:02:59 -0400 |
parents | 45a9649b4891 |
children | 59e80620e2df |
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--- a/PrecursorIonSelector.xml Wed Mar 01 12:20:14 2017 -0500 +++ b/PrecursorIonSelector.xml Wed Aug 09 09:02:59 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Targeted Experiments]--> -<tool id="PrecursorIonSelector" name="PrecursorIonSelector" version="2.1.0"> +<tool id="PrecursorIonSelector" name="PrecursorIonSelector" version="2.2.0"> <description>PrecursorIonSelector</description> <macros> <token name="@EXECUTABLE@">PrecursorIonSelector</token> @@ -63,7 +63,12 @@ #end for #end if #if $param_algorithm_type: - -algorithm:type $param_algorithm_type + -algorithm:type + #if " " in str($param_algorithm_type): + "$param_algorithm_type" + #else + $param_algorithm_type + #end if #end if #if $param_algorithm_max_iteration: -algorithm:max_iteration $param_algorithm_max_iteration @@ -120,7 +125,12 @@ -algorithm:MIPFormulation:combined_ilp:k3 $param_algorithm_MIPFormulation_combined_ilp_k3 #end if #if $param_algorithm_MIPFormulation_combined_ilp_scale_matching_probs: - -algorithm:MIPFormulation:combined_ilp:scale_matching_probs $param_algorithm_MIPFormulation_combined_ilp_scale_matching_probs + -algorithm:MIPFormulation:combined_ilp:scale_matching_probs + #if " " in str($param_algorithm_MIPFormulation_combined_ilp_scale_matching_probs): + "$param_algorithm_MIPFormulation_combined_ilp_scale_matching_probs" + #else + $param_algorithm_MIPFormulation_combined_ilp_scale_matching_probs + #end if #end if #if $param_algorithm_MIPFormulation_feature_based_no_intensity_normalization: -algorithm:MIPFormulation:feature_based:no_intensity_normalization @@ -132,7 +142,12 @@ -algorithm:Preprocessing:precursor_mass_tolerance $param_algorithm_Preprocessing_precursor_mass_tolerance #end if #if $param_algorithm_Preprocessing_precursor_mass_tolerance_unit: - -algorithm:Preprocessing:precursor_mass_tolerance_unit $param_algorithm_Preprocessing_precursor_mass_tolerance_unit + -algorithm:Preprocessing:precursor_mass_tolerance_unit + #if " " in str($param_algorithm_Preprocessing_precursor_mass_tolerance_unit): + "$param_algorithm_Preprocessing_precursor_mass_tolerance_unit" + #else + $param_algorithm_Preprocessing_precursor_mass_tolerance_unit + #end if #end if #if $param_algorithm_Preprocessing_preprocessed_db_path: -algorithm:Preprocessing:preprocessed_db_path "$param_algorithm_Preprocessing_preprocessed_db_path" @@ -175,7 +190,12 @@ #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_solver: - -solver $adv_opts.param_solver + -solver + #if " " in str($adv_opts.param_solver): + "$adv_opts.param_solver" + #else + $adv_opts.param_solver + #end if #end if #if $adv_opts.param_force: -force