diff ProteinInference.xml @ 7:4a39dd3bbe69 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/ProteinInference.xml	Tue Mar 20 14:41:30 2018 -0400
+++ b/ProteinInference.xml	Wed May 15 08:07:59 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>ProteinInference
+  <command detect_errors="aggressive"><![CDATA[ProteinInference
 
 #if $param_in:
   -in $param_in
@@ -32,7 +32,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/>
     <param name="param_min_peptides_per_protein" type="integer" min="1" optional="True" value="2" label="Minimal number of peptides needed for a protein identification" help="(-min_peptides_per_protein) "/>
@@ -48,5 +48,5 @@
   <help>Protein inference based on the number of identified peptides.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ProteinInference.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ProteinInference.html</help>
 </tool>