Mercurial > repos > galaxyp > openms_proteinquantifier

comparison ProteinQuantifier.xml @ 1:908ae1e4eb28 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:40:10 -0400
parents 7652a9664052
children fbae1b1acf70
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0:7652a9664052 1:908ae1e4eb28
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Quantitation]--> 3 <!--Proposed Tool Section: [Quantitation]-->
4 <tool id="ProteinQuantifier" name="ProteinQuantifier" version="2.1.0"> 4 <tool id="ProteinQuantifier" name="ProteinQuantifier" version="2.2.0">
5 <description>Compute peptide and protein abundances</description> 5 <description>Compute peptide and protein abundances</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">ProteinQuantifier</token> 7 <token name="@EXECUTABLE@">ProteinQuantifier</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
26 #end if 26 #end if
27 #if $param_top: 27 #if $param_top:
28 -top $param_top 28 -top $param_top
29 #end if 29 #end if
30 #if $param_average: 30 #if $param_average:
31 -average $param_average 31 -average
32 #if " " in str($param_average):
33 "$param_average"
34 #else
35 $param_average
36 #end if
32 #end if 37 #end if
33 #if $param_include_all: 38 #if $param_include_all:
34 -include_all 39 -include_all
35 #end if 40 #end if
36 #if $param_filter_charge: 41 #if $param_filter_charge:
50 #end if 55 #end if
51 #if $param_format_separator: 56 #if $param_format_separator:
52 -format:separator "$param_format_separator" 57 -format:separator "$param_format_separator"
53 #end if 58 #end if
54 #if $param_format_quoting: 59 #if $param_format_quoting:
55 -format:quoting $param_format_quoting 60 -format:quoting
61 #if " " in str($param_format_quoting):
62 "$param_format_quoting"
63 #else
64 $param_format_quoting
65 #end if
56 #end if 66 #end if
57 #if $param_format_replacement: 67 #if $param_format_replacement:
58 -format:replacement "$param_format_replacement" 68 -format:replacement "$param_format_replacement"
59 #end if 69 #end if
60 #if $adv_opts.adv_opts_selector=='advanced': 70 #if $adv_opts.adv_opts_selector=='advanced':