diff ProteinQuantifier.xml @ 11:bb1e75938909 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

--- a/ProteinQuantifier.xml	Thu Sep 24 11:58:12 2020 +0000
+++ b/ProteinQuantifier.xml	Tue Oct 13 19:47:00 2020 +0000
@@ -121,15 +121,15 @@
       </param>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="false">
-      <option value="out_FLAG">out (If 'quoting' is 'none', used to replace occurrences of the separator in strings before writing)</option>
-      <option value="peptide_out_FLAG">peptide_out (If 'quoting' is 'none', used to replace occurrences of the separator in strings before writing)</option>
-      <option value="mztab_FLAG">mztab (If 'quoting' is 'none', used to replace occurrences of the separator in strings before writing)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_FLAG">out (Output file for protein abundances)</option>
+      <option value="peptide_out_FLAG">peptide_out (Output file for peptide abundances)</option>
+      <option value="mztab_FLAG">mztab (Output file (mzTab))</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -157,6 +157,6 @@
   <help><![CDATA[Compute peptide and protein abundances
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_ProteinQuantifier.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_ProteinQuantifier.html]]></help>
   <expand macro="references"/>
 </tool>