comparison ProteinResolver.xml @ 7:6cf5aa34e245 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

6:6c4318671e0d

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>ProteinResolver

#if $param_fasta:
  -fasta $param_fasta
#end if
-in

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/>
    <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) ">
      <sanitizer>
        <valid initial="string.printable">

    <data name="param_additional_info" format="tabular"/>
  </outputs>
  <help>protein inference


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ProteinResolver.html</help>
</tool>

7:6cf5aa34e245

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[ProteinResolver

#if $param_fasta:
  -fasta $param_fasta
#end if
-in

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/>
    <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) ">
      <sanitizer>
        <valid initial="string.printable">

    <data name="param_additional_info" format="tabular"/>
  </outputs>
  <help>protein inference


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ProteinResolver.html</help>
</tool>