Mercurial > repos > galaxyp > openms_ptmodel
comparison PTModel.xml @ 1:30ccca244091 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:21:36 -0400 |
| parents | 2b34b435c177 |
| children | a174f62788b7 |
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| 0:2b34b435c177 | 1:30ccca244091 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [Peptide property prediction]--> | 3 <!--Proposed Tool Section: [Peptide property prediction]--> |
| 4 <tool id="PTModel" name="PTModel" version="2.1.0"> | 4 <tool id="PTModel" name="PTModel" version="2.2.0"> |
| 5 <description>Trains a model for the prediction of proteotypic peptides from a training set.</description> | 5 <description>Trains a model for the prediction of proteotypic peptides from a training set.</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">PTModel</token> | 7 <token name="@EXECUTABLE@">PTModel</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 23 #end if | 23 #end if |
| 24 #if $param_c: | 24 #if $param_c: |
| 25 -c $param_c | 25 -c $param_c |
| 26 #end if | 26 #end if |
| 27 #if $param_svm_type: | 27 #if $param_svm_type: |
| 28 -svm_type $param_svm_type | 28 -svm_type |
| 29 #if " " in str($param_svm_type): | |
| 30 "$param_svm_type" | |
| 31 #else | |
| 32 $param_svm_type | |
| 33 #end if | |
| 29 #end if | 34 #end if |
| 30 #if $param_nu: | 35 #if $param_nu: |
| 31 -nu $param_nu | 36 -nu $param_nu |
| 32 #end if | 37 #end if |
| 33 #if $param_kernel_type: | 38 #if $param_kernel_type: |
| 34 -kernel_type $param_kernel_type | 39 -kernel_type |
| 40 #if " " in str($param_kernel_type): | |
| 41 "$param_kernel_type" | |
| 42 #else | |
| 43 $param_kernel_type | |
| 44 #end if | |
| 35 #end if | 45 #end if |
| 36 #if $param_degree: | 46 #if $param_degree: |
| 37 -degree $param_degree | 47 -degree $param_degree |
| 38 #end if | 48 #end if |
| 39 #if $param_border_length: | 49 #if $param_border_length: |