Mercurial > repos > galaxyp > openms_qcembedder
view QCEmbedder.xml @ 5:f2dea9c04568 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author | galaxyp |
---|---|
date | Mon, 12 Feb 2018 12:55:53 -0500 |
parents | 401b56e2b31b |
children | 059c20a50b1d |
line wrap: on
line source
<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> <tool id="QCEmbedder" name="QCEmbedder" version="2.3.0"> <description>Attaches a table or an image to a given qc parameter.</description> <macros> <token name="@EXECUTABLE@">QCEmbedder</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>QCEmbedder #if $param_in: -in $param_in #end if #if $param_qp_att_acc: -qp_att_acc "$param_qp_att_acc" #end if #if $param_cv_acc: -cv_acc "$param_cv_acc" #end if #if $param_run: -run $param_run #end if #if $param_name: -name "$param_name" #end if #if $param_plot: -plot $param_plot #end if #if $param_table: -table $param_table #end if #if $param_out: -out $param_out #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="qcml" optional="True" label="Input qcml file" help="(-in) "/> <param name="param_qp_att_acc" type="text" size="30" label="Defines the qp cv accession of the qp to which the table/image is attached" help="(-qp_att_acc) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <param name="param_cv_acc" type="text" size="30" label="Defines the cv accession of the attachment" help="(-cv_acc) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <param name="param_run" type="data" format="mzml" optional="True" label="The file that defined the run under which the qp for the attachment is aggregated as mzML file" help="(-run) The file is only used to extract the run name from the file name"/> <param name="param_name" type="text" size="30" label="If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given" help="(-name) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <param name="param_plot" type="data" format="PNG" optional="True" label="If a plot image is to be attached to a qp, this has to be specified here" help="(-plot) "/> <param name="param_table" type="data" format="tabular" optional="True" label="If a table is to be attached to a qp, this has to be specified here" help="(-table) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="qcml"/> </outputs> <help>Attaches a table or an image to a given qc parameter. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCEmbedder.html</help> </tool>