Mercurial > repos > galaxyp > openms_qcextractor
diff QCExtractor.xml @ 12:c8d22d876c75 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author | galaxyp |
---|---|
date | Thu, 01 Dec 2022 19:00:36 +0000 |
parents | 7468a1c8ca6e |
children | 9a527fdadffc |
line wrap: on
line diff
--- a/QCExtractor.xml Fri Nov 06 20:36:25 2020 +0000 +++ b/QCExtractor.xml Thu Dec 01 19:00:36 2022 +0000 @@ -1,13 +1,11 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> -<tool id="QCExtractor" name="QCExtractor" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@" profile="20.05"> +<tool id="QCExtractor" name="QCExtractor" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> <description>Extracts a table attachment to a given qc parameter.</description> <macros> <token name="@EXECUTABLE@">QCExtractor</token> <import>macros.xml</import> - <import>macros_autotest.xml</import> - <import>macros_test.xml</import> </macros> <expand macro="requirements"/> <expand macro="stdio"/> @@ -49,18 +47,18 @@ <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> </configfiles> <inputs> - <param name="in" argument="-in" type="data" format="qcml" optional="false" label="Input qcml file" help=" select qcml data sets(s)"/> - <param name="qp" argument="-qp" type="text" optional="false" value="" label="Target attachment qp" help=""> - <expand macro="list_string_san"/> + <param argument="-in" type="data" format="qcml" optional="false" label="Input qcml file" help=" select qcml data sets(s)"/> + <param argument="-qp" type="text" optional="false" value="" label="Target attachment qp" help=""> + <expand macro="list_string_san" name="qp"/> </param> - <param name="run" argument="-run" type="data" format="mzml" optional="true" label="The file that defined the run under which the qp for the attachment is aggregated as mzML file" help="The file is only used to extract the run name from the file name select mzml data sets(s)"/> - <param name="name" argument="-name" type="text" optional="true" value="" label="If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given" help=""> - <expand macro="list_string_san"/> + <param argument="-run" type="data" format="mzml" optional="true" label="The file that defined the run under which the qp for the attachment is aggregated as mzML file" help="The file is only used to extract the run name from the file name select mzml data sets(s)"/> + <param argument="-name" type="text" optional="true" value="" label="If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given" help=""> + <expand macro="list_string_san" name="name"/> </param> <expand macro="adv_opts_macro"> - <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> - <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> - <expand macro="list_string_san"/> + <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> + <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> + <expand macro="list_string_san" name="test"/> </param> </expand> <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> @@ -73,13 +71,11 @@ <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> </data> </outputs> - <tests> - <expand macro="autotest_QCExtractor"/> - <expand macro="manutest_QCExtractor"/> - </tests> + <tests><!--TODO--> +</tests> <help><![CDATA[Extracts a table attachment to a given qc parameter. -For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_QCExtractor.html]]></help> +For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_QCExtractor.html]]></help> <expand macro="references"/> </tool>