Mercurial > repos > galaxyp > openms_qcextractor
view QCExtractor.xml @ 3:e2eb1f850949 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit d4b74e94ddabaccec6b1c5f9540d074c39207600
author | galaxyp |
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date | Sat, 28 Oct 2017 05:28:01 -0400 |
parents | 6c4b0427c053 |
children | 564fe41ff448 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> <tool id="QCExtractor" name="QCExtractor" version="2.2.0"> <description>Extracts a table attachment to a given qc parameter.</description> <macros> <token name="@EXECUTABLE@">QCExtractor</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>QCExtractor #if $param_in: -in $param_in #end if #if $param_qp: -qp "$param_qp" #end if #if $param_run: -run $param_run #end if #if $param_name: -name "$param_name" #end if #if $param_out_csv: -out_csv $param_out_csv #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="qcml" optional="False" label="Input qcml file" help="(-in) "/> <param name="param_qp" type="text" size="30" label="Target attachment qp" help="(-qp) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <param name="param_run" type="data" format="mzml" optional="True" label="The file that defined the run under which the qp for the attachment is aggregated as mzML file" help="(-run) The file is only used to extract the run name from the file name"/> <param name="param_name" type="text" size="30" label="If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given" help="(-name) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out_csv" format="tabular"/> </outputs> <help>Extracts a table attachment to a given qc parameter. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCExtractor.html</help> </tool>