# HG changeset patch
# User galaxyp
# Date 1669921236 0
# Node ID c8d22d876c75b41966dd8e5757d0ec004df086d1
# Parent a1d6562ac8cfb8a63d23d4113bb6a90f3e261726
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
diff -r a1d6562ac8cf -r c8d22d876c75 404-urls.patch
--- a/404-urls.patch Fri Nov 06 20:36:25 2020 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,11 +0,0 @@
-diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml
---- FeatureFinderSuperHirn.xml 2020-10-02 12:06:56.398572301 +0200
-+++ FeatureFinderSuperHirn.xml 2020-10-02 12:07:31.511153834 +0200
-@@ -105,6 +105,6 @@
-
-+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.6.0/html/UTILS_FeatureFinderSuperHirn.html]]>
-
-
diff -r a1d6562ac8cf -r c8d22d876c75 OMSSAAdapter.patch
--- a/OMSSAAdapter.patch Fri Nov 06 20:36:25 2020 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
---- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200
-+++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200
-@@ -22,6 +22,7 @@
- mkdir database &&
- ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
-
-+makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
- ## Main program call
-
- set -o pipefail &&
diff -r a1d6562ac8cf -r c8d22d876c75 PepNovoAdapter.patch
--- a/PepNovoAdapter.patch Fri Nov 06 20:36:25 2020 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
---- PepNovoAdapter.xml 2020-05-12 15:55:24.712831518 +0200
-+++ /tmp/PepNovoAdapter.xml 2020-05-12 15:36:31.267276757 +0200
-@@ -42,8 +42,13 @@
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-@@ -51,8 +56,14 @@
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diff -r a1d6562ac8cf -r c8d22d876c75 QCExtractor.xml
--- a/QCExtractor.xml Fri Nov 06 20:36:25 2020 +0000
+++ b/QCExtractor.xml Thu Dec 01 19:00:36 2022 +0000
@@ -1,13 +1,11 @@
-