Mercurial > repos > galaxyp > openms_rnadigestor
annotate tool-data/pepnovo_models.loc.sample @ 3:6d492588ae83 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 2adf8edc3de4e1cd3b299b26abb14544d17d0636"
author | galaxyp |
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date | Fri, 06 Nov 2020 19:52:15 +0000 (2020-11-06) |
parents | 3e7d3f64392b |
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3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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1 # This is a sample file distributed with Galaxy that enables tools |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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2 # to use pepnovo models |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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3 # The file has three tab separated columns: name, value, and path. |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
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4 # The idea is that there are a number of models in a directory: |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
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5 # - each model directory has a unique name (columns 2 and 0) |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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6 # - each model can contain a set of models (column 1) |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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7 # |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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changeset
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8 # The following example works fo the default models from |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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9 # http://proteomics.ucsd.edu/Software/PepNovo.html (just remove the comment |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
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10 # chars and replace DIR_TO_PEPNOVO_MODELS) |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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11 |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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12 #default_models CID_IT_TRYP DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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13 #default_models LTQ_COMP DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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14 #default_models DBC4_PEAK DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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15 #default_models CID_IT_TRYP_TAG5 DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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16 #default_models CID_IT_TRYP_TAG6 DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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17 #default_models ITDNV_PEAK DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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18 #default_models CID_IT_TRYP_SCORE DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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19 #default_models CID_IT_TRYP_TAG3 DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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20 #default_models CID_IT_TRYP_DNVPART DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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21 #default_models CID_IT_TRYP_TAG4 DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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22 #default_models CID_IT_TRYP_DB DIR_TO_PEPNOVO_MODELS |
3e7d3f64392b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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23 #default_models CID_IT_TRYP_CSP DIR_TO_PEPNOVO_MODELS |