diff 404-urls.patch @ 1:1af5b39289b8 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/404-urls.patch	Thu Sep 24 12:26:30 2020 +0000
@@ -0,0 +1,65 @@
+diff -ruN ClusterMassTracesByPrecursor.xml ClusterMassTracesByPrecursor.xml
+--- ClusterMassTracesByPrecursor.xml	2020-09-21 17:02:36.060104555 +0200
++++ ClusterMassTracesByPrecursor.xml	2020-09-21 17:00:02.864815223 +0200
+@@ -75,8 +75,6 @@
+     <expand macro="manutest_ClusterMassTracesByPrecursor"/>
+   </tests>
+   <help><![CDATA[Correlate precursor masstraces with fragment ion masstraces in SWATH maps based on their elution profile.
+-
+-
+-For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTracesByPrecursor.html]]></help>
++]]></help>
+   <expand macro="references"/>
+ </tool>
+diff -ruN ClusterMassTraces.xml ClusterMassTraces.xml
+--- ClusterMassTraces.xml	2020-09-21 17:02:36.060104555 +0200
++++ ClusterMassTraces.xml	2020-09-21 17:00:22.192722036 +0200
+@@ -69,8 +69,6 @@
+     <expand macro="manutest_ClusterMassTraces"/>
+   </tests>
+   <help><![CDATA[Creates pseudo spectra.
+-
+-
+-For more information, visit http://www.openms.de/documentation/UTILS_ClusterMassTraces.html]]></help>
++]]></help>
+   <expand macro="references"/>
+ </tool>
+diff -ruN FeatureFinderSuperHirn.xml FeatureFinderSuperHirn.xml
+--- FeatureFinderSuperHirn.xml	2020-09-21 17:02:36.060104555 +0200
++++ FeatureFinderSuperHirn.xml	2020-09-21 17:00:42.372625907 +0200
+@@ -103,8 +103,6 @@
+     <expand macro="manutest_FeatureFinderSuperHirn"/>
+   </tests>
+   <help><![CDATA[Finds mass spectrometric features in mass spectra.
+-
+-
+-For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderSuperHirn.html]]></help>
++]]></help>
+   <expand macro="references"/>
+ </tool>
+diff -ruN MSFraggerAdapter.xml MSFraggerAdapter.xml
+--- MSFraggerAdapter.xml	2020-09-21 17:02:36.060104555 +0200
++++ MSFraggerAdapter.xml	2020-09-21 17:01:04.892519985 +0200
+@@ -250,8 +250,6 @@
+     <expand macro="manutest_MSFraggerAdapter"/>
+   </tests>
+   <help><![CDATA[Peptide Identification with MSFragger
+-
+-
+-For more information, visit http://www.openms.de/documentation/UTILS_MSFraggerAdapter.html]]></help>
++]]></help>
+   <expand macro="references"/>
+ </tool>
+diff -ruN SimpleSearchEngine.xml SimpleSearchEngine.xml
+--- SimpleSearchEngine.xml	2020-09-21 17:02:36.060104555 +0200
++++ SimpleSearchEngine.xml	2020-09-21 17:01:33.020389600 +0200
+@@ -5373,8 +5373,6 @@
+     <expand macro="manutest_SimpleSearchEngine"/>
+   </tests>
+   <help><![CDATA[Annotates MS/MS spectra using SimpleSearchEngine.
+-
+-
+-For more information, visit http://www.openms.de/documentation/UTILS_SimpleSearchEngine.html]]></help>
++]]></help>
+   <expand macro="references"/>
+ </tool>