comparison RNPxl.xml @ 7:49d8333edbfb draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

6:1988e1452730

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>RNPxl

#if $param_in_mzML:
  -in_mzML $param_in_mzML
#end if
#if $param_length:

#end if
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_in_mzML" type="data" format="mzml" optional="False" label="Input file" help="(-in_mzML) "/>
    <param name="param_length" type="integer" value="4" label="Oligonucleotide maximum length" help="(-length) "/>
    <param name="param_sequence" type="text" size="30" label="Sequence to restrict the generation of oligonucleotide chains" help="(-sequence) (disabled for empty sequence)">
      <sanitizer>

    <data name="param_out_csv" format="tabular"/>
  </outputs>
  <help>Tool for RNP cross linking experiment analysis.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxl.html</help>
</tool>

7:49d8333edbfb

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[RNPxl

#if $param_in_mzML:
  -in_mzML $param_in_mzML
#end if
#if $param_length:

#end if
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_in_mzML" type="data" format="mzml" optional="False" label="Input file" help="(-in_mzML) "/>
    <param name="param_length" type="integer" value="4" label="Oligonucleotide maximum length" help="(-length) "/>
    <param name="param_sequence" type="text" size="30" label="Sequence to restrict the generation of oligonucleotide chains" help="(-sequence) (disabled for empty sequence)">
      <sanitizer>

    <data name="param_out_csv" format="tabular"/>
  </outputs>
  <help>Tool for RNP cross linking experiment analysis.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_RNPxl.html</help>
</tool>