Mercurial > repos > galaxyp > openms_rnpxl
diff test-data/SequenceCoverageCalculator.idXML @ 8:4dbfc881d14f draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
| author | galaxyp |
|---|---|
| date | Fri, 17 May 2019 09:26:40 -0400 |
| parents | 49d8333edbfb |
| children |
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--- a/test-data/SequenceCoverageCalculator.idXML Wed May 15 08:03:20 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,161 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<?xml-stylesheet type="text/xsl" href="https://www.openms.de/xml-stylesheet/IdXML.xsl" ?> -<IdXML version="1.5" xsi:noNamespaceSchemaLocation="https://www.openms.de/xml-schema/IdXML_1_5.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> - <SearchParameters id="SP_0" db="/home/eugen/Development/OpenMS/src/tests/topp/OpenPepXL_input.fasta" db_version="" taxonomy="" mass_type="monoisotopic" charges="3,4,5,6,7" enzyme="trypsin" missed_cleavages="2" precursor_peak_tolerance="10" precursor_peak_tolerance_ppm="true" peak_mass_tolerance="0.2" peak_mass_tolerance_ppm="false" > - <UserParam type="string" name="input_consensusXML" value="/home/eugen/Development/OpenMS/src/tests/topp/OpenPepXL_input.consensusXML"/> - <UserParam type="string" name="input_mzML" value="/home/eugen/Development/OpenMS/src/tests/topp/OpenPepXL_input.mzML"/> - <UserParam type="string" name="input_decoys" value=""/> - <UserParam type="int" name="decoy_prefix" value="0"/> - <UserParam type="string" name="decoy_string" value="decoy"/> - <UserParam type="string" name="out_xquest_specxml" value="OpenPepXL_output.spec.xml.tmp"/> - <UserParam type="int" name="precursor:min_charge" value="3"/> - <UserParam type="int" name="precursor:max_charge" value="7"/> - <UserParam type="float" name="fragment:mass_tolerance_xlinks" value="0.3"/> - <UserParam type="int" name="peptide:min_size" value="5"/> - <UserParam type="stringList" name="cross_link:residue1" value="[K]"/> - <UserParam type="stringList" name="cross_link:residue2" value="[K]"/> - <UserParam type="float" name="cross_link:mass" value="138.0680796"/> - <UserParam type="float" name="cross_link:mass_isoshift" value="12.075321"/> - <UserParam type="floatList" name="cross_link:mass_monolink" value="[156.07864431, 155.094628715]"/> - <UserParam type="string" name="cross_link:name" value="DSS"/> - <UserParam type="int" name="modifications:variable_max_per_peptide" value="2"/> - <UserParam type="int" name="MS:1001029" value="329"/> - </SearchParameters> - <IdentificationRun date="2018-03-06T13:21:04" search_engine="OpenXQuest" search_engine_version="2.3.0" search_parameters_ref="SP_0" > - <ProteinIdentification score_type="" higher_score_better="true" significance_threshold="0" > - <ProteinHit id="PH_0" accession="Protein3" score="0" sequence="" > - <UserParam type="string" name="target_decoy" value="target"/> - </ProteinHit> - <ProteinHit id="PH_1" accession="Protein2" score="0" sequence="" > - <UserParam type="string" name="target_decoy" value="target"/> - </ProteinHit> - <ProteinHit id="PH_2" accession="Protein1" score="0" sequence="" > - <UserParam type="string" name="target_decoy" value="target"/> - </ProteinHit> - <UserParam type="string" name="SpectrumIdentificationProtocol" value="MS:1002494"/> - </ProteinIdentification> - <PeptideIdentification score_type="OpenXQuest:combined score" higher_score_better="true" significance_threshold="0" MZ="728.411010742188" RT="2120.05249023438" spectrum_reference="spectrum=99,spectrum=48" > - 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