comparison RNPxlXICFilter.xml @ 7:397b489a4f8d draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty

6:1ee2d03c8445

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>RNPxlXICFilter

#if $param_control:
  -control $param_control
#end if
#if $param_treatment:

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_control" type="data" format="mzml" optional="False" label="input mzML file" help="(-control) "/>
    <param name="param_treatment" type="data" format="mzml" optional="False" label="input mzML file" help="(-treatment) "/>
    <param name="param_fold_change" type="float" value="2.0" label="fold change between XICs" help="(-fold_change) "/>
    <param name="param_rt_tol" type="float" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help="(-rt_tol) "/>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Remove MS2 spectra from treatment based on the fold change between control and treatment.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxlXICFilter.html</help>
</tool>

7:397b489a4f8d

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[RNPxlXICFilter

#if $param_control:
  -control $param_control
#end if
#if $param_treatment:

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_control" type="data" format="mzml" optional="False" label="input mzML file" help="(-control) "/>
    <param name="param_treatment" type="data" format="mzml" optional="False" label="input mzML file" help="(-treatment) "/>
    <param name="param_fold_change" type="float" value="2.0" label="fold change between XICs" help="(-fold_change) "/>
    <param name="param_rt_tol" type="float" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help="(-rt_tol) "/>

    <data name="param_out" format="mzml"/>
  </outputs>
  <help>Remove MS2 spectra from treatment based on the fold change between control and treatment.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_RNPxlXICFilter.html</help>
</tool>