Mercurial > repos > galaxyp > openms_rnpxlxicfilter
view RNPxlXICFilter.xml @ 4:bd49f7d37e2f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 8a95bc868914fb41c7452907f73a9273b03286ab
author | galaxyp |
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date | Thu, 11 Jan 2018 17:53:46 -0500 |
parents | 8160f7ad51ed |
children | 8128af6d94bb |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Utilities]--> <tool id="RNPxlXICFilter" name="RNPxlXICFilter" version="2.2.0"> <description>Remove MS2 spectra from treatment based on the fold change between control and treatment.</description> <macros> <token name="@EXECUTABLE@">RNPxlXICFilter</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>RNPxlXICFilter #if $param_control: -control $param_control #end if #if $param_treatment: -treatment $param_treatment #end if #if $param_fold_change: -fold_change $param_fold_change #end if #if $param_rt_tol: -rt_tol $param_rt_tol #end if #if $param_mz_tol: -mz_tol $param_mz_tol #end if #if $param_out: -out $param_out #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_control" type="data" format="mzml" optional="False" label="input mzML file" help="(-control) "/> <param name="param_treatment" type="data" format="mzml" optional="False" label="input mzML file" help="(-treatment) "/> <param name="param_fold_change" type="float" value="2.0" label="fold change between XICs" help="(-fold_change) "/> <param name="param_rt_tol" type="float" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help="(-rt_tol) "/> <param name="param_mz_tol" type="float" value="10.0" label="m/z tolerance in [ppm] for finding a peak" help="(-mz_tol) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>Remove MS2 spectra from treatment based on the fold change between control and treatment. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxlXICFilter.html</help> </tool>