Mercurial > repos > galaxyp > openms_rtevaluation
comparison RTEvaluation.xml @ 7:07dfbd60b100 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
---|---|
date | Fri, 17 May 2019 04:44:23 -0400 |
parents | b4a3c247bc49 |
children | 0cf2a9047a17 |
comparison
equal
deleted
inserted
replaced
6:d72a7b30e17d | 7:07dfbd60b100 |
---|---|
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>RTEvaluation | 13 <command detect_errors="aggressive"><![CDATA[RTEvaluation |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
30 #if $adv_opts.adv_opts_selector=='advanced': | 30 #if $adv_opts.adv_opts_selector=='advanced': |
31 #if $adv_opts.param_force: | 31 #if $adv_opts.param_force: |
32 -force | 32 -force |
33 #end if | 33 #end if |
34 #end if | 34 #end if |
35 </command> | 35 ]]></command> |
36 <inputs> | 36 <inputs> |
37 <param name="param_in" type="data" format="idxml" optional="False" label="Input file" help="(-in) "/> | 37 <param name="param_in" type="data" format="idxml" optional="False" label="Input file" help="(-in) "/> |
38 <param name="param_latex" display="radio" type="boolean" truevalue="-latex" falsevalue="" checked="false" optional="True" label="Indicates whether the output file format of the table should be LaTeX or CSV (default)" help="(-latex) "/> | 38 <param name="param_latex" display="radio" type="boolean" truevalue="-latex" falsevalue="" checked="false" optional="True" label="Indicates whether the output file format of the table should be LaTeX or CSV (default)" help="(-latex) "/> |
39 <param name="param_p_value_dim_1" type="float" min="0.0" max="1.0" optional="True" value="0.01" label="Significance level of first dimension RT filte" help="(-p_value_dim_1) "/> | 39 <param name="param_p_value_dim_1" type="float" min="0.0" max="1.0" optional="True" value="0.01" label="Significance level of first dimension RT filte" help="(-p_value_dim_1) "/> |
40 <param name="param_p_value_dim_2" type="float" min="0.0" max="1.0" optional="True" value="0.05" label="Significance level of second dimension RT filte" help="(-p_value_dim_2) "/> | 40 <param name="param_p_value_dim_2" type="float" min="0.0" max="1.0" optional="True" value="0.05" label="Significance level of second dimension RT filte" help="(-p_value_dim_2) "/> |
46 <data name="param_out" format="tabular"/> | 46 <data name="param_out" format="tabular"/> |
47 </outputs> | 47 </outputs> |
48 <help>Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs. | 48 <help>Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs. |
49 | 49 |
50 | 50 |
51 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RTEvaluation.html</help> | 51 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_RTEvaluation.html</help> |
52 </tool> | 52 </tool> |