comparison RTEvaluation.xml @ 7:07dfbd60b100 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:44:23 -0400
parents b4a3c247bc49
children 0cf2a9047a17
comparison
equal deleted inserted replaced
6:d72a7b30e17d 7:07dfbd60b100
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>RTEvaluation 13 <command detect_errors="aggressive"><![CDATA[RTEvaluation
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
30 #if $adv_opts.adv_opts_selector=='advanced': 30 #if $adv_opts.adv_opts_selector=='advanced':
31 #if $adv_opts.param_force: 31 #if $adv_opts.param_force:
32 -force 32 -force
33 #end if 33 #end if
34 #end if 34 #end if
35 </command> 35 ]]></command>
36 <inputs> 36 <inputs>
37 <param name="param_in" type="data" format="idxml" optional="False" label="Input file" help="(-in) "/> 37 <param name="param_in" type="data" format="idxml" optional="False" label="Input file" help="(-in) "/>
38 <param name="param_latex" display="radio" type="boolean" truevalue="-latex" falsevalue="" checked="false" optional="True" label="Indicates whether the output file format of the table should be LaTeX or CSV (default)" help="(-latex) "/> 38 <param name="param_latex" display="radio" type="boolean" truevalue="-latex" falsevalue="" checked="false" optional="True" label="Indicates whether the output file format of the table should be LaTeX or CSV (default)" help="(-latex) "/>
39 <param name="param_p_value_dim_1" type="float" min="0.0" max="1.0" optional="True" value="0.01" label="Significance level of first dimension RT filte" help="(-p_value_dim_1) "/> 39 <param name="param_p_value_dim_1" type="float" min="0.0" max="1.0" optional="True" value="0.01" label="Significance level of first dimension RT filte" help="(-p_value_dim_1) "/>
40 <param name="param_p_value_dim_2" type="float" min="0.0" max="1.0" optional="True" value="0.05" label="Significance level of second dimension RT filte" help="(-p_value_dim_2) "/> 40 <param name="param_p_value_dim_2" type="float" min="0.0" max="1.0" optional="True" value="0.05" label="Significance level of second dimension RT filte" help="(-p_value_dim_2) "/>
46 <data name="param_out" format="tabular"/> 46 <data name="param_out" format="tabular"/>
47 </outputs> 47 </outputs>
48 <help>Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs. 48 <help>Application that evaluates TPs (true positives), TNs, FPs, and FNs for an idXML file with predicted RTs.
49 49
50 50
51 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RTEvaluation.html</help> 51 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_RTEvaluation.html</help>
52 </tool> 52 </tool>