comparison SemanticValidator.xml @ 7:6f22beeb9f32 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

6:241674ffc642

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SemanticValidator

#if $param_in:
  -in $param_in
#end if
#if $param_mapping_file:

    #if $adv_opts.param_force:
  -force
#end if
#end if
> $param_stdout
</command>
  <inputs>
    <param name="param_in" type="data" format="analysisXML,mzml,traml,mzid,mzData,xml" optional="False" label="Input file (any xml file)" help="(-in) "/>
    <param name="param_mapping_file" type="data" format="xml" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/>
    <param name="param_cv" type="data" format="obo" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) ">
      <sanitizer>

    <data name="param_stdout" format="txt" label="Output from stdout"/>
  </outputs>
  <help>SemanticValidator for semantically validating certain XML files.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SemanticValidator.html</help>
</tool>

7:6f22beeb9f32

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[SemanticValidator

#if $param_in:
  -in $param_in
#end if
#if $param_mapping_file:

    #if $adv_opts.param_force:
  -force
#end if
#end if
> $param_stdout
]]></command>
  <inputs>
    <param name="param_in" type="data" format="analysisXML,mzml,traml,mzid,mzData,xml" optional="False" label="Input file (any xml file)" help="(-in) "/>
    <param name="param_mapping_file" type="data" format="xml" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/>
    <param name="param_cv" type="data" format="obo" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) ">
      <sanitizer>

    <data name="param_stdout" format="txt" label="Output from stdout"/>
  </outputs>
  <help>SemanticValidator for semantically validating certain XML files.


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SemanticValidator.html</help>
</tool>