Mercurial > repos > galaxyp > openms_semanticvalidator
comparison SemanticValidator.xml @ 11:b60c5420dac6 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 20:21:06 +0000 |
parents | 702ed84d9f4c |
children | ff9d0d1c2c1c |
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10:f8c659715995 | 11:b60c5420dac6 |
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52 <inputs> | 52 <inputs> |
53 <param name="in" argument="-in" type="data" format="mzdata,mzid,mzml,traml,xml" optional="false" label="Input file (any xml file)" help=" select mzdata,mzid,mzml,traml,xml data sets(s)"/> | 53 <param name="in" argument="-in" type="data" format="mzdata,mzid,mzml,traml,xml" optional="false" label="Input file (any xml file)" help=" select mzdata,mzid,mzml,traml,xml data sets(s)"/> |
54 <param name="mapping_file" argument="-mapping_file" type="data" format="xml" optional="false" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help=" select xml data sets(s)"/> | 54 <param name="mapping_file" argument="-mapping_file" type="data" format="xml" optional="false" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help=" select xml data sets(s)"/> |
55 <param name="cv" argument="-cv" type="data" format="obo" multiple="true" optional="true" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help=" select obo data sets(s)"/> | 55 <param name="cv" argument="-cv" type="data" format="obo" multiple="true" optional="true" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help=" select obo data sets(s)"/> |
56 <expand macro="adv_opts_macro"> | 56 <expand macro="adv_opts_macro"> |
57 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 57 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
58 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 58 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
59 <expand macro="list_string_san"/> | 59 <expand macro="list_string_san"/> |
60 </param> | 60 </param> |
61 </expand> | 61 </expand> |
62 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 62 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
64 </param> | 64 </param> |
65 </inputs> | 65 </inputs> |
66 <outputs> | 66 <outputs> |
67 <data name="stdout" format="txt" label="${tool.name} on ${on_string}: stdout"> | 67 <data name="stdout" format="txt" label="${tool.name} on ${on_string}: stdout"> |
76 <expand macro="manutest_SemanticValidator"/> | 76 <expand macro="manutest_SemanticValidator"/> |
77 </tests> | 77 </tests> |
78 <help><![CDATA[SemanticValidator for semantically validating certain XML files. | 78 <help><![CDATA[SemanticValidator for semantically validating certain XML files. |
79 | 79 |
80 | 80 |
81 For more information, visit http://www.openms.de/documentation/UTILS_SemanticValidator.html]]></help> | 81 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_SemanticValidator.html]]></help> |
82 <expand macro="references"/> | 82 <expand macro="references"/> |
83 </tool> | 83 </tool> |