Mercurial > repos > galaxyp > openms_semanticvalidator
view SemanticValidator.xml @ 6:241674ffc642 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author | galaxyp |
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date | Tue, 20 Mar 2018 14:33:46 -0400 |
parents | ae772e47d635 |
children | 6f22beeb9f32 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> <tool id="SemanticValidator" name="SemanticValidator" version="2.3.0"> <description>SemanticValidator for semantically validating certain XML files.</description> <macros> <token name="@EXECUTABLE@">SemanticValidator</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>SemanticValidator #if $param_in: -in $param_in #end if #if $param_mapping_file: -mapping_file $param_mapping_file #end if -cv #for token in $param_cv: $token #end for #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if > $param_stdout </command> <inputs> <param name="param_in" type="data" format="analysisXML,mzml,traml,mzid,mzData,xml" optional="False" label="Input file (any xml file)" help="(-in) "/> <param name="param_mapping_file" type="data" format="xml" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/> <param name="param_cv" type="data" format="obo" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/> <remove value="""/> </valid> </sanitizer> </param> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_stdout" format="txt" label="Output from stdout"/> </outputs> <help>SemanticValidator for semantically validating certain XML files. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SemanticValidator.html</help> </tool>