comparison SiriusAdapter.xml @ 2:8a3a17bbcb63 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

1:5f87757577cc

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SiriusAdapter

#if $param_in:
  -in $param_in
#end if
#if $param_out_sirius:

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="MzML Input file" help="(-in) "/>
    <param name="param_profile" display="radio" type="select" optional="False" value="qtof" label="Specify the used analysis profile" help="(-profile) ">
      <option value="qtof" selected="true">qtof</option>
      <option value="orbitrap">orbitrap</option>

    <data name="param_out_fingerid" format="tabular"/>
  </outputs>
  <help>Tool for metabolite identification using single and tandem mass spectrometry


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SiriusAdapter.html</help>
</tool>

2:8a3a17bbcb63

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[SiriusAdapter

#if $param_in:
  -in $param_in
#end if
#if $param_out_sirius:

#if $adv_opts.adv_opts_selector=='advanced':
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_in" type="data" format="mzml" optional="False" label="MzML Input file" help="(-in) "/>
    <param name="param_profile" display="radio" type="select" optional="False" value="qtof" label="Specify the used analysis profile" help="(-profile) ">
      <option value="qtof" selected="true">qtof</option>
      <option value="orbitrap">orbitrap</option>

    <data name="param_out_fingerid" format="tabular"/>
  </outputs>
  <help>Tool for metabolite identification using single and tandem mass spectrometry


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SiriusAdapter.html</help>
</tool>