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comparison SpecLibSearcher.xml @ 9:2d6e49acbb56 draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
author galaxyp
date Fri, 14 Jun 2024 21:35:13 +0000
parents 3aa3b656e624
children
comparison
equal deleted inserted replaced
8:3aa3b656e624 9:2d6e49acbb56
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> 1 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Identification]--> 2 <!--Proposed Tool Section: [Identification of Proteins/Peptides (SearchEngines)]-->
4 <tool id="SpecLibSearcher" name="SpecLibSearcher" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> 3 <tool id="SpecLibSearcher" name="SpecLibSearcher" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
5 <description>Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library.</description> 4 <description>Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library</description>
6 <macros> 5 <macros>
7 <token name="@EXECUTABLE@">SpecLibSearcher</token> 6 <token name="@EXECUTABLE@">SpecLibSearcher</token>
8 <import>macros.xml</import> 7 <import>macros.xml</import>
9 </macros> 8 </macros>
10 <expand macro="requirements"/> 9 <expand macro="requirements"/>
15 14
16 ## Preprocessing 15 ## Preprocessing
17 mkdir in_cond.in && 16 mkdir in_cond.in &&
18 #if $in_cond.in_select == "no" 17 #if $in_cond.in_select == "no"
19 mkdir ${' '.join(["'in_cond.in/%s'" % (i) for i, f in enumerate($in_cond.in) if f])} && 18 mkdir ${' '.join(["'in_cond.in/%s'" % (i) for i, f in enumerate($in_cond.in) if f])} &&
20 ${' '.join(["ln -s '%s' 'in_cond.in/%s/%s.%s' && " % (f, i, re.sub('[^\w\-_]', '_', f.element_identifier), $gxy2omsext(f.ext)) for i, f in enumerate($in_cond.in) if f])} 19 ${' '.join(["cp '%s' 'in_cond.in/%s/%s.%s' && " % (f, i, re.sub('[^\w\-_]', '_', f.element_identifier), $gxy2omsext(f.ext)) for i, f in enumerate($in_cond.in) if f])}
21 #else 20 #else
22 ln -s '$in_cond.in' 'in_cond.in/${re.sub("[^\w\-_]", "_", $in_cond.in.element_identifier)}.$gxy2omsext($in_cond.in.ext)' && 21 cp '$in_cond.in' 'in_cond.in/${re.sub("[^\w\-_]", "_", $in_cond.in.element_identifier)}.$gxy2omsext($in_cond.in.ext)' &&
23 #end if 22 #end if
24 mkdir lib && 23 mkdir lib &&
25 ln -s '$lib' 'lib/${re.sub("[^\w\-_]", "_", $lib.element_identifier)}.$gxy2omsext($lib.ext)' && 24 cp '$lib' 'lib/${re.sub("[^\w\-_]", "_", $lib.element_identifier)}.$gxy2omsext($lib.ext)' &&
26 mkdir out && 25 mkdir out &&
27 mkdir ${' '.join(["'out/%s'" % (i) for i, f in enumerate($in_cond.in) if f])} && 26 mkdir ${' '.join(["'out/%s'" % (i) for i, f in enumerate($in_cond.in) if f])} &&
28 27
29 ## Main program call 28 ## Main program call
30 29
57 <param name="in_select" type="select" label="Run tool in batch mode for -in"> 56 <param name="in_select" type="select" label="Run tool in batch mode for -in">
58 <option value="no">No: process all datasets jointly</option> 57 <option value="no">No: process all datasets jointly</option>
59 <option value="yes">Yes: process each dataset in an independent job</option> 58 <option value="yes">Yes: process each dataset in an independent job</option>
60 </param> 59 </param>
61 <when value="no"> 60 <when value="no">
62 <param argument="-in" type="data" format="mzml" multiple="true" optional="false" label="Input files" help=" select mzml data sets(s)"/> 61 <param argument="-in" type="data" format="mzml" multiple="true" label="Input files" help=" select mzml data sets(s)"/>
63 </when> 62 </when>
64 <when value="yes"> 63 <when value="yes">
65 <param argument="-in" type="data" format="mzml" multiple="false" optional="false" label="Input files" help=" select mzml data sets(s)"/> 64 <param argument="-in" type="data" format="mzml" label="Input files" help=" select mzml data sets(s)"/>
66 </when> 65 </when>
67 </conditional> 66 </conditional>
68 <param argument="-lib" type="data" format="msp" optional="false" label="searchable spectral library (MSP format)" help=" select msp data sets(s)"/> 67 <param argument="-lib" type="data" format="msp" label="searchable spectral library (MSP format)" help=" select msp data sets(s)"/>
69 <param argument="-compare_function" type="select" optional="true" label="function for similarity comparison" help=""> 68 <param argument="-compare_function" type="select" label="function for similarity comparison" help="">
70 <option value="PeakAlignment">PeakAlignment</option> 69 <option value="PeakAlignment">PeakAlignment</option>
71 <option value="SpectrumAlignmentScore">SpectrumAlignmentScore</option> 70 <option value="SpectrumAlignmentScore">SpectrumAlignmentScore</option>
72 <option value="SpectrumCheapDPCorr">SpectrumCheapDPCorr</option> 71 <option value="SpectrumCheapDPCorr">SpectrumCheapDPCorr</option>
73 <option value="SpectrumPrecursorComparator">SpectrumPrecursorComparator</option> 72 <option value="SpectrumPrecursorComparator">SpectrumPrecursorComparator</option>
74 <option value="SteinScottImproveScore">SteinScottImproveScore</option> 73 <option value="SteinScottImproveScore">SteinScottImproveScore</option>
75 <option value="ZhangSimilarityScore" selected="true">ZhangSimilarityScore</option> 74 <option value="ZhangSimilarityScore" selected="true">ZhangSimilarityScore</option>
76 <expand macro="list_string_san" name="compare_function"/> 75 <expand macro="list_string_san" name="compare_function"/>
77 </param> 76 </param>
78 <section name="precursor" title="Precursor (Parent Ion) Options" help="" expanded="false"> 77 <section name="precursor" title="Precursor (Parent Ion) Options" help="" expanded="false">
79 <param name="mass_tolerance" argument="-precursor:mass_tolerance" type="float" optional="true" value="10.0" label="Width of precursor mass tolerance window" help=""/> 78 <param name="mass_tolerance" argument="-precursor:mass_tolerance" type="float" value="10.0" label="Width of precursor mass tolerance window" help=""/>
80 <param name="mass_tolerance_unit" argument="-precursor:mass_tolerance_unit" type="select" optional="true" label="Unit of precursor mass tolerance" help=""> 79 <param name="mass_tolerance_unit" argument="-precursor:mass_tolerance_unit" type="select" label="Unit of precursor mass tolerance" help="">
81 <option value="ppm" selected="true">ppm</option> 80 <option value="ppm" selected="true">ppm</option>
82 <option value="Da">Da</option> 81 <option value="Da">Da</option>
83 <expand macro="list_string_san" name="mass_tolerance_unit"/> 82 <expand macro="list_string_san" name="mass_tolerance_unit"/>
84 </param> 83 </param>
85 <param name="min_charge" argument="-precursor:min_charge" type="integer" optional="true" value="2" label="Minimum precursor charge to be considered" help=""/> 84 <param name="min_charge" argument="-precursor:min_charge" type="integer" value="2" label="Minimum precursor charge to be considered" help=""/>
86 <param name="max_charge" argument="-precursor:max_charge" type="integer" optional="true" value="5" label="Maximum precursor charge to be considered" help=""/> 85 <param name="max_charge" argument="-precursor:max_charge" type="integer" value="5" label="Maximum precursor charge to be considered" help=""/>
87 <param name="isotopes" argument="-precursor:isotopes" type="text" optional="true" value="0 1" label="Corrects for mono-isotopic peak misassignments" help="(E.g.: 1 = prec. may be misassigned to first isotopic peak) (space separated list, in order to allow for spaces in list items surround them by single quotes)"> 86 <param name="isotopes" argument="-precursor:isotopes" type="text" value="0 1" label="Corrects for mono-isotopic peak misassignments" help="(E.g.: 1 = prec. may be misassigned to first isotopic peak) (space separated list, in order to allow for spaces in list items surround them by single quotes)">
88 <expand macro="list_integer_valsan" name="isotopes"/> 87 <expand macro="list_integer_valsan" name="isotopes"/>
89 </param> 88 </param>
90 </section> 89 </section>
91 <section name="fragment" title="Fragments (Product Ion) Options" help="" expanded="false"> 90 <section name="fragment" title="Fragments (Product Ion) Options" help="" expanded="false">
92 <param name="mass_tolerance" argument="-fragment:mass_tolerance" type="float" optional="true" value="10.0" label="Fragment mass tolerance" help=""/> 91 <param name="mass_tolerance" argument="-fragment:mass_tolerance" type="float" value="10.0" label="Fragment mass tolerance" help=""/>
93 </section> 92 </section>
94 <section name="report" title="Reporting Options" help="" expanded="false"> 93 <section name="report" title="Reporting Options" help="" expanded="false">
95 <param name="top_hits" argument="-report:top_hits" type="integer" optional="true" value="10" label="Maximum number of top scoring hits per spectrum that are reported" help=""/> 94 <param name="top_hits" argument="-report:top_hits" type="integer" value="10" label="Maximum number of top scoring hits per spectrum that are reported" help=""/>
96 </section> 95 </section>
97 <section name="filter" title="Filtering options" help="Most are especially useful when the query spectra are raw" expanded="false"> 96 <section name="filter" title="Filtering options" help="Most are especially useful when the query spectra are raw" expanded="false">
98 <param name="remove_peaks_below_threshold" argument="-filter:remove_peaks_below_threshold" type="float" optional="true" value="2.01" label="All peaks of a query spectrum with intensities below &lt;threshold&gt; will be zeroed" help=""/> 97 <param name="remove_peaks_below_threshold" argument="-filter:remove_peaks_below_threshold" type="float" value="2.01" label="All peaks of a query spectrum with intensities below &lt;threshold&gt; will be zeroed" help=""/>
99 <param name="min_peaks" argument="-filter:min_peaks" type="integer" optional="true" value="5" label="required minimum number of peaks for a query spectrum" help=""/> 98 <param name="min_peaks" argument="-filter:min_peaks" type="integer" value="5" label="required minimum number of peaks for a query spectrum" help=""/>
100 <param name="max_peaks" argument="-filter:max_peaks" type="integer" optional="true" value="150" label="Use only the top &lt;number&gt; of peaks" help=""/> 99 <param name="max_peaks" argument="-filter:max_peaks" type="integer" value="150" label="Use only the top &lt;number&gt; of peaks" help=""/>
101 <param name="cut_peaks_below" argument="-filter:cut_peaks_below" type="integer" optional="true" value="1000" label="Remove all peaks which are lower than 1/&lt;number&gt; of the highest peaks" help="Default equals all peaks which are lower than 0.001 of the maximum intensity peak"/> 100 <param name="cut_peaks_below" argument="-filter:cut_peaks_below" type="integer" value="1000" label="Remove all peaks which are lower than 1/&lt;number&gt; of the highest peaks" help="Default equals all peaks which are lower than 0.001 of the maximum intensity peak"/>
102 </section> 101 </section>
103 <section name="modifications" title="Modifications Options" help="" expanded="false"> 102 <section name="modifications" title="Modifications Options" help="" expanded="false">
104 <param name="fixed" argument="-modifications:fixed" multiple="true" type="select" optional="true" label="Fixed modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Carbamidomethyl (C)'"> 103 <param name="fixed" argument="-modifications:fixed" type="select" multiple="true" optional="true" label="Fixed modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Carbamidomethyl (C)'">
105 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> 104 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option>
106 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option> 105 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option>
107 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option> 106 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option>
108 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 107 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
109 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 108 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
110 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 109 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>
111 <option value="2-succinyl (C)">2-succinyl (C)</option> 110 <option value="2-succinyl (C)">2-succinyl (C)</option>
112 <option value="2HPG (R)">2HPG (R)</option> 111 <option value="2HPG (R)">2HPG (R)</option>
113 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> 112 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option>
113 <option value="3-hydroxybenzyl-phosphate (K)">3-hydroxybenzyl-phosphate (K)</option>
114 <option value="3-hydroxybenzyl-phosphate (S)">3-hydroxybenzyl-phosphate (S)</option>
115 <option value="3-hydroxybenzyl-phosphate (T)">3-hydroxybenzyl-phosphate (T)</option>
116 <option value="3-hydroxybenzyl-phosphate (Y)">3-hydroxybenzyl-phosphate (Y)</option>
114 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> 117 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option>
115 <option value="3sulfo (N-term)">3sulfo (N-term)</option> 118 <option value="3sulfo (N-term)">3sulfo (N-term)</option>
116 <option value="4-ONE (C)">4-ONE (C)</option> 119 <option value="4-ONE (C)">4-ONE (C)</option>
117 <option value="4-ONE (H)">4-ONE (H)</option> 120 <option value="4-ONE (H)">4-ONE (H)</option>
118 <option value="4-ONE (K)">4-ONE (K)</option> 121 <option value="4-ONE (K)">4-ONE (K)</option>
198 <option value="Ammonium (D)">Ammonium (D)</option> 201 <option value="Ammonium (D)">Ammonium (D)</option>
199 <option value="Ammonium (E)">Ammonium (E)</option> 202 <option value="Ammonium (E)">Ammonium (E)</option>
200 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> 203 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option>
201 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> 204 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option>
202 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> 205 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option>
206 <option value="Andro-H2O (C)">Andro-H2O (C)</option>
203 <option value="Archaeol (C)">Archaeol (C)</option> 207 <option value="Archaeol (C)">Archaeol (C)</option>
204 <option value="Arg (N-term)">Arg (N-term)</option> 208 <option value="Arg (N-term)">Arg (N-term)</option>
205 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option> 209 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option>
206 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option> 210 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option>
207 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option> 211 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option>
301 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option> 305 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option>
302 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> 306 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option>
303 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> 307 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option>
304 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> 308 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option>
305 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> 309 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option>
310 <option value="Biotin:Aha-DADPS (M)">Biotin:Aha-DADPS (M)</option>
306 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> 311 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option>
307 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> 312 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option>
308 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> 313 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option>
309 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> 314 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option>
310 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> 315 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option>
333 <option value="BITC (C)">BITC (C)</option> 338 <option value="BITC (C)">BITC (C)</option>
334 <option value="BITC (K)">BITC (K)</option> 339 <option value="BITC (K)">BITC (K)</option>
335 <option value="BITC (N-term)">BITC (N-term)</option> 340 <option value="BITC (N-term)">BITC (N-term)</option>
336 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> 341 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option>
337 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> 342 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option>
338 <option value="Bodipy (C)">Bodipy (C)</option>
339 <option value="Brij35 (N-term)">Brij35 (N-term)</option> 343 <option value="Brij35 (N-term)">Brij35 (N-term)</option>
340 <option value="Brij58 (N-term)">Brij58 (N-term)</option> 344 <option value="Brij58 (N-term)">Brij58 (N-term)</option>
341 <option value="Bromo (F)">Bromo (F)</option> 345 <option value="Bromo (F)">Bromo (F)</option>
342 <option value="Bromo (H)">Bromo (H)</option> 346 <option value="Bromo (H)">Bromo (H)</option>
343 <option value="Bromo (W)">Bromo (W)</option> 347 <option value="Bromo (W)">Bromo (W)</option>
765 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option> 769 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option>
766 <option value="Dehydrated (S)">Dehydrated (S)</option> 770 <option value="Dehydrated (S)">Dehydrated (S)</option>
767 <option value="Dehydrated (T)">Dehydrated (T)</option> 771 <option value="Dehydrated (T)">Dehydrated (T)</option>
768 <option value="Dehydrated (Y)">Dehydrated (Y)</option> 772 <option value="Dehydrated (Y)">Dehydrated (Y)</option>
769 <option value="Dehydro (C)">Dehydro (C)</option> 773 <option value="Dehydro (C)">Dehydro (C)</option>
774 <option value="Delta:H(-1)N(-1)18O(1) (N)">Delta:H(-1)N(-1)18O(1) (N)</option>
770 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option> 775 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option>
771 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option> 776 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option>
772 <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option>
773 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option> 777 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option>
774 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> 778 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option>
775 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> 779 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option>
776 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> 780 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option>
777 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option> 781 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option>
778 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> 782 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option>
779 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> 783 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option>
780 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> 784 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option>
781 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> 785 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option>
782 <option value="Delta:H(3)C(3)O(2) (K)">Delta:H(3)C(3)O(2) (K)</option>
783 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> 786 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option>
784 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> 787 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option>
785 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> 788 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option>
786 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> 789 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option>
787 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> 790 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option>
789 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option> 792 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option>
790 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> 793 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option>
791 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> 794 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option>
792 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> 795 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option>
793 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option> 796 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option>
797 <option value="Delta:H(4)C(3)O(2) (K)">Delta:H(4)C(3)O(2) (K)</option>
794 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option> 798 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option>
795 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> 799 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option>
796 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> 800 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option>
797 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> 801 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option>
798 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> 802 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option>
1361 <option value="Ethanolamine (D)">Ethanolamine (D)</option> 1365 <option value="Ethanolamine (D)">Ethanolamine (D)</option>
1362 <option value="Ethanolamine (E)">Ethanolamine (E)</option> 1366 <option value="Ethanolamine (E)">Ethanolamine (E)</option>
1363 <option value="Ethanolyl (C)">Ethanolyl (C)</option> 1367 <option value="Ethanolyl (C)">Ethanolyl (C)</option>
1364 <option value="Ethanolyl (K)">Ethanolyl (K)</option> 1368 <option value="Ethanolyl (K)">Ethanolyl (K)</option>
1365 <option value="Ethanolyl (R)">Ethanolyl (R)</option> 1369 <option value="Ethanolyl (R)">Ethanolyl (R)</option>
1366 <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option>
1367 <option value="Ethyl (C-term)">Ethyl (C-term)</option> 1370 <option value="Ethyl (C-term)">Ethyl (C-term)</option>
1368 <option value="Ethyl (D)">Ethyl (D)</option> 1371 <option value="Ethyl (D)">Ethyl (D)</option>
1369 <option value="Ethyl (E)">Ethyl (E)</option> 1372 <option value="Ethyl (E)">Ethyl (E)</option>
1370 <option value="Ethyl (K)">Ethyl (K)</option> 1373 <option value="Ethyl (K)">Ethyl (K)</option>
1371 <option value="Ethyl (N-term)">Ethyl (N-term)</option> 1374 <option value="Ethyl (N-term)">Ethyl (N-term)</option>
1455 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option> 1458 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option>
1456 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option> 1459 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option>
1457 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option> 1460 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option>
1458 <option value="Glu (E)">Glu (E)</option> 1461 <option value="Glu (E)">Glu (E)</option>
1459 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option> 1462 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option>
1463 <option value="Glu+O(2) (H)">Glu+O(2) (H)</option>
1460 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option> 1464 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option>
1461 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option> 1465 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option>
1462 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option> 1466 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option>
1463 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option> 1467 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option>
1464 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option> 1468 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option>
1469 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option> 1473 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option>
1470 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option> 1474 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option>
1471 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option> 1475 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option>
1472 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option> 1476 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option>
1473 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option> 1477 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option>
1474 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)</option>
1475 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> 1478 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option>
1476 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option> 1479 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option>
1477 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option> 1480 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option>
1478 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option> 1481 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option>
1479 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option> 1482 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option>
1493 <option value="Gluratylation (K)">Gluratylation (K)</option> 1496 <option value="Gluratylation (K)">Gluratylation (K)</option>
1494 <option value="Glutathione (C)">Glutathione (C)</option> 1497 <option value="Glutathione (C)">Glutathione (C)</option>
1495 <option value="Gly (K)">Gly (K)</option> 1498 <option value="Gly (K)">Gly (K)</option>
1496 <option value="Gly (S)">Gly (S)</option> 1499 <option value="Gly (S)">Gly (S)</option>
1497 <option value="Gly (T)">Gly (T)</option> 1500 <option value="Gly (T)">Gly (T)</option>
1501 <option value="Gly+O(2) (H)">Gly+O(2) (H)</option>
1498 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option> 1502 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option>
1499 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option> 1503 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option>
1500 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option> 1504 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option>
1501 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option> 1505 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option>
1502 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option> 1506 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option>
1883 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option> 1887 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option>
1884 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> 1888 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option>
1885 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> 1889 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option>
1886 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> 1890 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option>
1887 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> 1891 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option>
1892 <option value="Hex(6)HexNAc(5)NeuAc(3) (N)">Hex(6)HexNAc(5)NeuAc(3) (N)</option>
1888 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> 1893 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option>
1889 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> 1894 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option>
1890 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> 1895 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option>
1891 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> 1896 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option>
1892 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> 1897 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option>
1894 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> 1899 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option>
1895 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> 1900 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option>
1896 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> 1901 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option>
1897 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> 1902 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option>
1898 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> 1903 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option>
1904 <option value="Hex(7)HexNAc(6) (N)">Hex(7)HexNAc(6) (N)</option>
1905 <option value="Hex(7)HexNAc(6) (S)">Hex(7)HexNAc(6) (S)</option>
1906 <option value="Hex(7)HexNAc(6) (T)">Hex(7)HexNAc(6) (T)</option>
1899 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> 1907 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option>
1900 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> 1908 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option>
1901 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> 1909 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option>
1902 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> 1910 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option>
1903 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> 1911 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option>
1949 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> 1957 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option>
1950 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> 1958 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option>
1951 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> 1959 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option>
1952 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> 1960 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option>
1953 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> 1961 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option>
1962 <option value="His+O(2) (H)">His+O(2) (H)</option>
1954 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option> 1963 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option>
1955 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option> 1964 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option>
1956 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option> 1965 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option>
1957 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option> 1966 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option>
1958 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option> 1967 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option>
2086 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> 2095 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option>
2087 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option> 2096 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option>
2088 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> 2097 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option>
2089 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> 2098 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option>
2090 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> 2099 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option>
2100 <option value="Kdo (S)">Kdo (S)</option>
2101 <option value="Kdo (T)">Kdo (T)</option>
2091 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> 2102 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option>
2092 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> 2103 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option>
2093 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> 2104 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option>
2094 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> 2105 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option>
2095 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> 2106 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option>
2107 <option value="Label:13C(3)15N(1) (S)">Label:13C(3)15N(1) (S)</option>
2096 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> 2108 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option>
2097 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> 2109 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option>
2098 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> 2110 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option>
2099 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> 2111 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option>
2100 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> 2112 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option>
2175 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option> 2187 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option>
2176 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> 2188 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option>
2177 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> 2189 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option>
2178 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option> 2190 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option>
2179 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> 2191 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option>
2192 <option value="LG-pyrrole (C)">LG-pyrrole (C)</option>
2180 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> 2193 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option>
2181 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> 2194 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option>
2182 <option value="Lipoyl (K)">Lipoyl (K)</option> 2195 <option value="Lipoyl (K)">Lipoyl (K)</option>
2183 <option value="LRGG (K)">LRGG (K)</option> 2196 <option value="LRGG (K)">LRGG (K)</option>
2184 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> 2197 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option>
2185 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> 2198 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option>
2199 <option value="LTX+Lophotoxin (Y)">LTX+Lophotoxin (Y)</option>
2186 <option value="Lys (N-term)">Lys (N-term)</option> 2200 <option value="Lys (N-term)">Lys (N-term)</option>
2201 <option value="Lys+O(2) (H)">Lys+O(2) (H)</option>
2187 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option> 2202 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option>
2188 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option> 2203 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option>
2189 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option> 2204 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option>
2190 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option> 2205 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option>
2191 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option> 2206 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option>
2216 <option value="maleimide5 (C)">maleimide5 (C)</option> 2231 <option value="maleimide5 (C)">maleimide5 (C)</option>
2217 <option value="maleimide5 (K)">maleimide5 (K)</option> 2232 <option value="maleimide5 (K)">maleimide5 (K)</option>
2218 <option value="Malonyl (C)">Malonyl (C)</option> 2233 <option value="Malonyl (C)">Malonyl (C)</option>
2219 <option value="Malonyl (K)">Malonyl (K)</option> 2234 <option value="Malonyl (K)">Malonyl (K)</option>
2220 <option value="Malonyl (S)">Malonyl (S)</option> 2235 <option value="Malonyl (S)">Malonyl (S)</option>
2236 <option value="MBS+peptide (C)">MBS+peptide (C)</option>
2221 <option value="MDCC (C)">MDCC (C)</option> 2237 <option value="MDCC (C)">MDCC (C)</option>
2222 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option> 2238 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option>
2223 <option value="Menadione (C)">Menadione (C)</option> 2239 <option value="Menadione (C)">Menadione (C)</option>
2224 <option value="Menadione (K)">Menadione (K)</option> 2240 <option value="Menadione (K)">Menadione (K)</option>
2225 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option> 2241 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option>
2227 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option> 2243 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option>
2228 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option> 2244 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option>
2229 <option value="MesitylOxide (H)">MesitylOxide (H)</option> 2245 <option value="MesitylOxide (H)">MesitylOxide (H)</option>
2230 <option value="MesitylOxide (K)">MesitylOxide (K)</option> 2246 <option value="MesitylOxide (K)">MesitylOxide (K)</option>
2231 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option> 2247 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option>
2248 <option value="Met+O(2) (H)">Met+O(2) (H)</option>
2232 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option> 2249 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option>
2233 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option> 2250 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option>
2234 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option> 2251 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option>
2235 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option> 2252 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option>
2236 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option> 2253 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option>
2410 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option> 2427 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option>
2411 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option> 2428 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option>
2412 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option> 2429 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option>
2413 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> 2430 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option>
2414 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> 2431 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option>
2415 <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option>
2416 <option value="NP40 (N-term)">NP40 (N-term)</option> 2432 <option value="NP40 (N-term)">NP40 (N-term)</option>
2417 <option value="NQIGG (K)">NQIGG (K)</option> 2433 <option value="NQIGG (K)">NQIGG (K)</option>
2418 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option> 2434 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option>
2419 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option> 2435 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option>
2420 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option> 2436 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option>
2498 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option> 2514 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option>
2499 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option> 2515 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option>
2500 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option> 2516 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option>
2501 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option> 2517 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option>
2502 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option> 2518 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option>
2519 <option value="phenyl-phosphate (K)">phenyl-phosphate (K)</option>
2520 <option value="phenyl-phosphate (S)">phenyl-phosphate (S)</option>
2521 <option value="phenyl-phosphate (T)">phenyl-phosphate (T)</option>
2522 <option value="phenyl-phosphate (Y)">phenyl-phosphate (Y)</option>
2503 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> 2523 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option>
2504 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> 2524 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option>
2505 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> 2525 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option>
2506 <option value="Phospho (C)">Phospho (C)</option> 2526 <option value="Phospho (C)">Phospho (C)</option>
2507 <option value="Phospho (D)">Phospho (D)</option> 2527 <option value="Phospho (D)">Phospho (D)</option>
2512 <option value="Phospho (S)">Phospho (S)</option> 2532 <option value="Phospho (S)">Phospho (S)</option>
2513 <option value="Phospho (T)">Phospho (T)</option> 2533 <option value="Phospho (T)">Phospho (T)</option>
2514 <option value="Phospho (Y)">Phospho (Y)</option> 2534 <option value="Phospho (Y)">Phospho (Y)</option>
2515 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option> 2535 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option>
2516 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option> 2536 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option>
2537 <option value="Phosphoadenosine (S)">Phosphoadenosine (S)</option>
2517 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option> 2538 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option>
2518 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option> 2539 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option>
2519 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option> 2540 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option>
2520 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option> 2541 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option>
2521 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option> 2542 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option>
2543 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option> 2564 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option>
2544 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option> 2565 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option>
2545 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option> 2566 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option>
2546 <option value="Piperidine (K)">Piperidine (K)</option> 2567 <option value="Piperidine (K)">Piperidine (K)</option>
2547 <option value="Piperidine (N-term)">Piperidine (N-term)</option> 2568 <option value="Piperidine (N-term)">Piperidine (N-term)</option>
2569 <option value="Pro+O(2) (H)">Pro+O(2) (H)</option>
2548 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option> 2570 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option>
2549 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option> 2571 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option>
2550 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option> 2572 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option>
2551 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option> 2573 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option>
2552 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option> 2574 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option>
2620 <option value="QEQTGG (K)">QEQTGG (K)</option> 2642 <option value="QEQTGG (K)">QEQTGG (K)</option>
2621 <option value="QQQTGG (K)">QQQTGG (K)</option> 2643 <option value="QQQTGG (K)">QQQTGG (K)</option>
2622 <option value="QTGG (K)">QTGG (K)</option> 2644 <option value="QTGG (K)">QTGG (K)</option>
2623 <option value="Quinone (W)">Quinone (W)</option> 2645 <option value="Quinone (W)">Quinone (W)</option>
2624 <option value="Quinone (Y)">Quinone (Y)</option> 2646 <option value="Quinone (Y)">Quinone (Y)</option>
2647 <option value="RBS-ID_Uridine (A)">RBS-ID_Uridine (A)</option>
2648 <option value="RBS-ID_Uridine (C)">RBS-ID_Uridine (C)</option>
2649 <option value="RBS-ID_Uridine (D)">RBS-ID_Uridine (D)</option>
2650 <option value="RBS-ID_Uridine (E)">RBS-ID_Uridine (E)</option>
2651 <option value="RBS-ID_Uridine (F)">RBS-ID_Uridine (F)</option>
2652 <option value="RBS-ID_Uridine (G)">RBS-ID_Uridine (G)</option>
2653 <option value="RBS-ID_Uridine (H)">RBS-ID_Uridine (H)</option>
2654 <option value="RBS-ID_Uridine (I)">RBS-ID_Uridine (I)</option>
2655 <option value="RBS-ID_Uridine (K)">RBS-ID_Uridine (K)</option>
2656 <option value="RBS-ID_Uridine (L)">RBS-ID_Uridine (L)</option>
2657 <option value="RBS-ID_Uridine (M)">RBS-ID_Uridine (M)</option>
2658 <option value="RBS-ID_Uridine (N)">RBS-ID_Uridine (N)</option>
2659 <option value="RBS-ID_Uridine (P)">RBS-ID_Uridine (P)</option>
2660 <option value="RBS-ID_Uridine (Q)">RBS-ID_Uridine (Q)</option>
2661 <option value="RBS-ID_Uridine (R)">RBS-ID_Uridine (R)</option>
2662 <option value="RBS-ID_Uridine (S)">RBS-ID_Uridine (S)</option>
2663 <option value="RBS-ID_Uridine (T)">RBS-ID_Uridine (T)</option>
2664 <option value="RBS-ID_Uridine (V)">RBS-ID_Uridine (V)</option>
2665 <option value="RBS-ID_Uridine (W)">RBS-ID_Uridine (W)</option>
2666 <option value="RBS-ID_Uridine (Y)">RBS-ID_Uridine (Y)</option>
2625 <option value="Retinylidene (K)">Retinylidene (K)</option> 2667 <option value="Retinylidene (K)">Retinylidene (K)</option>
2626 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> 2668 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option>
2627 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> 2669 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option>
2628 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> 2670 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option>
2629 <option value="RNPXlink2 (F)">RNPXlink2 (F)</option>
2630 <option value="RNPXlink2 (K)">RNPXlink2 (K)</option>
2631 <option value="RNPXlink2 (L)">RNPXlink2 (L)</option>
2632 <option value="RNPXlink3 (C)">RNPXlink3 (C)</option>
2633 <option value="RNPXlink3 (F)">RNPXlink3 (F)</option>
2634 <option value="RNPXlink4 (C)">RNPXlink4 (C)</option>
2635 <option value="RNPXlink5 (F)">RNPXlink5 (F)</option>
2636 <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option>
2637 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> 2671 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option>
2638 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> 2672 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option>
2639 <option value="Saligenin (H)">Saligenin (H)</option> 2673 <option value="Saligenin (H)">Saligenin (H)</option>
2640 <option value="Saligenin (K)">Saligenin (K)</option> 2674 <option value="Saligenin (K)">Saligenin (K)</option>
2641 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option> 2675 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option>
2659 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option> 2693 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option>
2660 <option value="serotonylation (Q)">serotonylation (Q)</option> 2694 <option value="serotonylation (Q)">serotonylation (Q)</option>
2661 <option value="shTMT (K)">shTMT (K)</option> 2695 <option value="shTMT (K)">shTMT (K)</option>
2662 <option value="shTMT (N-term)">shTMT (N-term)</option> 2696 <option value="shTMT (N-term)">shTMT (N-term)</option>
2663 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option> 2697 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option>
2698 <option value="shTMTpro (K)">shTMTpro (K)</option>
2699 <option value="shTMTpro (N-term)">shTMTpro (N-term)</option>
2700 <option value="shTMTpro (Protein N-term)">shTMTpro (Protein N-term)</option>
2664 <option value="SMA (K)">SMA (K)</option> 2701 <option value="SMA (K)">SMA (K)</option>
2665 <option value="SMA (N-term)">SMA (N-term)</option> 2702 <option value="SMA (N-term)">SMA (N-term)</option>
2666 <option value="spermidine (Q)">spermidine (Q)</option> 2703 <option value="spermidine (Q)">spermidine (Q)</option>
2667 <option value="spermine (Q)">spermine (Q)</option> 2704 <option value="spermine (Q)">spermine (Q)</option>
2668 <option value="SPITC (K)">SPITC (K)</option> 2705 <option value="SPITC (K)">SPITC (K)</option>
2834 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option> 2871 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option>
2835 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option> 2872 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option>
2836 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option> 2873 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option>
2837 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option> 2874 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option>
2838 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option> 2875 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option>
2839 <option value="Ub-amide (C)">Ub-amide (C)</option>
2840 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> 2876 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option>
2841 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> 2877 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option>
2842 <option value="Ub-VME (C)">Ub-VME (C)</option> 2878 <option value="Ub-VME (C)">Ub-VME (C)</option>
2843 <option value="UgiJoullie (D)">UgiJoullie (D)</option> 2879 <option value="UgiJoullie (D)">UgiJoullie (D)</option>
2844 <option value="UgiJoullie (E)">UgiJoullie (E)</option> 2880 <option value="UgiJoullie (E)">UgiJoullie (E)</option>
3029 <option value="ZGB (K)">ZGB (K)</option> 3065 <option value="ZGB (K)">ZGB (K)</option>
3030 <option value="ZGB (N-term)">ZGB (N-term)</option> 3066 <option value="ZGB (N-term)">ZGB (N-term)</option>
3031 <option value="ZQG (K)">ZQG (K)</option> 3067 <option value="ZQG (K)">ZQG (K)</option>
3032 <expand macro="list_string_san" name="fixed"/> 3068 <expand macro="list_string_san" name="fixed"/>
3033 </param> 3069 </param>
3034 <param name="variable" argument="-modifications:variable" multiple="true" type="select" optional="true" label="Variable modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Oxidation (M)'"> 3070 <param name="variable" argument="-modifications:variable" type="select" multiple="true" optional="true" label="Variable modifications, specified using UniMod (www.unimod.org) terms" help="e.g. 'Oxidation (M)'">
3035 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> 3071 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option>
3036 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option> 3072 <option value="15N-oxobutanoic (Protein N-term S)">15N-oxobutanoic (Protein N-term S)</option>
3037 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option> 3073 <option value="15N-oxobutanoic (Protein N-term T)">15N-oxobutanoic (Protein N-term T)</option>
3038 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> 3074 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option>
3039 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> 3075 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option>
3040 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> 3076 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option>
3041 <option value="2-succinyl (C)">2-succinyl (C)</option> 3077 <option value="2-succinyl (C)">2-succinyl (C)</option>
3042 <option value="2HPG (R)">2HPG (R)</option> 3078 <option value="2HPG (R)">2HPG (R)</option>
3043 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option> 3079 <option value="3-deoxyglucosone (R)">3-deoxyglucosone (R)</option>
3080 <option value="3-hydroxybenzyl-phosphate (K)">3-hydroxybenzyl-phosphate (K)</option>
3081 <option value="3-hydroxybenzyl-phosphate (S)">3-hydroxybenzyl-phosphate (S)</option>
3082 <option value="3-hydroxybenzyl-phosphate (T)">3-hydroxybenzyl-phosphate (T)</option>
3083 <option value="3-hydroxybenzyl-phosphate (Y)">3-hydroxybenzyl-phosphate (Y)</option>
3044 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option> 3084 <option value="3-phosphoglyceryl (K)">3-phosphoglyceryl (K)</option>
3045 <option value="3sulfo (N-term)">3sulfo (N-term)</option> 3085 <option value="3sulfo (N-term)">3sulfo (N-term)</option>
3046 <option value="4-ONE (C)">4-ONE (C)</option> 3086 <option value="4-ONE (C)">4-ONE (C)</option>
3047 <option value="4-ONE (H)">4-ONE (H)</option> 3087 <option value="4-ONE (H)">4-ONE (H)</option>
3048 <option value="4-ONE (K)">4-ONE (K)</option> 3088 <option value="4-ONE (K)">4-ONE (K)</option>
3128 <option value="Ammonium (D)">Ammonium (D)</option> 3168 <option value="Ammonium (D)">Ammonium (D)</option>
3129 <option value="Ammonium (E)">Ammonium (E)</option> 3169 <option value="Ammonium (E)">Ammonium (E)</option>
3130 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option> 3170 <option value="AMTzHexNAc2 (N)">AMTzHexNAc2 (N)</option>
3131 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option> 3171 <option value="AMTzHexNAc2 (S)">AMTzHexNAc2 (S)</option>
3132 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option> 3172 <option value="AMTzHexNAc2 (T)">AMTzHexNAc2 (T)</option>
3173 <option value="Andro-H2O (C)">Andro-H2O (C)</option>
3133 <option value="Archaeol (C)">Archaeol (C)</option> 3174 <option value="Archaeol (C)">Archaeol (C)</option>
3134 <option value="Arg (N-term)">Arg (N-term)</option> 3175 <option value="Arg (N-term)">Arg (N-term)</option>
3135 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option> 3176 <option value="Arg-&gt;Ala (R)">Arg-&gt;Ala (R)</option>
3136 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option> 3177 <option value="Arg-&gt;Asn (R)">Arg-&gt;Asn (R)</option>
3137 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option> 3178 <option value="Arg-&gt;Asp (R)">Arg-&gt;Asp (R)</option>
3231 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option> 3272 <option value="Biotin-PEO-Amine (Protein C-term)">Biotin-PEO-Amine (Protein C-term)</option>
3232 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> 3273 <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option>
3233 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> 3274 <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option>
3234 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> 3275 <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option>
3235 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> 3276 <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option>
3277 <option value="Biotin:Aha-DADPS (M)">Biotin:Aha-DADPS (M)</option>
3236 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> 3278 <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option>
3237 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> 3279 <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option>
3238 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> 3280 <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option>
3239 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> 3281 <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option>
3240 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> 3282 <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option>
3263 <option value="BITC (C)">BITC (C)</option> 3305 <option value="BITC (C)">BITC (C)</option>
3264 <option value="BITC (K)">BITC (K)</option> 3306 <option value="BITC (K)">BITC (K)</option>
3265 <option value="BITC (N-term)">BITC (N-term)</option> 3307 <option value="BITC (N-term)">BITC (N-term)</option>
3266 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option> 3308 <option value="BMP-piperidinol (C)">BMP-piperidinol (C)</option>
3267 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option> 3309 <option value="BMP-piperidinol (M)">BMP-piperidinol (M)</option>
3268 <option value="Bodipy (C)">Bodipy (C)</option>
3269 <option value="Brij35 (N-term)">Brij35 (N-term)</option> 3310 <option value="Brij35 (N-term)">Brij35 (N-term)</option>
3270 <option value="Brij58 (N-term)">Brij58 (N-term)</option> 3311 <option value="Brij58 (N-term)">Brij58 (N-term)</option>
3271 <option value="Bromo (F)">Bromo (F)</option> 3312 <option value="Bromo (F)">Bromo (F)</option>
3272 <option value="Bromo (H)">Bromo (H)</option> 3313 <option value="Bromo (H)">Bromo (H)</option>
3273 <option value="Bromo (W)">Bromo (W)</option> 3314 <option value="Bromo (W)">Bromo (W)</option>
3695 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option> 3736 <option value="Dehydrated (Protein C-term Q)">Dehydrated (Protein C-term Q)</option>
3696 <option value="Dehydrated (S)">Dehydrated (S)</option> 3737 <option value="Dehydrated (S)">Dehydrated (S)</option>
3697 <option value="Dehydrated (T)">Dehydrated (T)</option> 3738 <option value="Dehydrated (T)">Dehydrated (T)</option>
3698 <option value="Dehydrated (Y)">Dehydrated (Y)</option> 3739 <option value="Dehydrated (Y)">Dehydrated (Y)</option>
3699 <option value="Dehydro (C)">Dehydro (C)</option> 3740 <option value="Dehydro (C)">Dehydro (C)</option>
3741 <option value="Delta:H(-1)N(-1)18O(1) (N)">Delta:H(-1)N(-1)18O(1) (N)</option>
3700 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option> 3742 <option value="Delta:H(-4)O(2) (W)">Delta:H(-4)O(2) (W)</option>
3701 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option> 3743 <option value="Delta:H(-4)O(3) (W)">Delta:H(-4)O(3) (W)</option>
3702 <option value="Delta:H(1)N(-1)18O(1) (N)">Delta:H(1)N(-1)18O(1) (N)</option>
3703 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option> 3744 <option value="Delta:H(10)C(8)O(1) (K)">Delta:H(10)C(8)O(1) (K)</option>
3704 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option> 3745 <option value="Delta:H(2)C(2) (H)">Delta:H(2)C(2) (H)</option>
3705 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option> 3746 <option value="Delta:H(2)C(2) (K)">Delta:H(2)C(2) (K)</option>
3706 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option> 3747 <option value="Delta:H(2)C(2) (N-term)">Delta:H(2)C(2) (N-term)</option>
3707 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option> 3748 <option value="Delta:H(2)C(2) (Protein N-term)">Delta:H(2)C(2) (Protein N-term)</option>
3708 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option> 3749 <option value="Delta:H(2)C(3) (K)">Delta:H(2)C(3) (K)</option>
3709 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option> 3750 <option value="Delta:H(2)C(3)O(1) (K)">Delta:H(2)C(3)O(1) (K)</option>
3710 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option> 3751 <option value="Delta:H(2)C(3)O(1) (R)">Delta:H(2)C(3)O(1) (R)</option>
3711 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option> 3752 <option value="Delta:H(2)C(5) (K)">Delta:H(2)C(5) (K)</option>
3712 <option value="Delta:H(3)C(3)O(2) (K)">Delta:H(3)C(3)O(2) (K)</option>
3713 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option> 3753 <option value="Delta:H(4)C(2) (H)">Delta:H(4)C(2) (H)</option>
3714 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option> 3754 <option value="Delta:H(4)C(2) (K)">Delta:H(4)C(2) (K)</option>
3715 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option> 3755 <option value="Delta:H(4)C(2) (N-term)">Delta:H(4)C(2) (N-term)</option>
3716 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option> 3756 <option value="Delta:H(4)C(2)O(-1)S(1) (S)">Delta:H(4)C(2)O(-1)S(1) (S)</option>
3717 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option> 3757 <option value="Delta:H(4)C(3) (H)">Delta:H(4)C(3) (H)</option>
3719 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option> 3759 <option value="Delta:H(4)C(3) (Protein N-term)">Delta:H(4)C(3) (Protein N-term)</option>
3720 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option> 3760 <option value="Delta:H(4)C(3)O(1) (C)">Delta:H(4)C(3)O(1) (C)</option>
3721 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option> 3761 <option value="Delta:H(4)C(3)O(1) (H)">Delta:H(4)C(3)O(1) (H)</option>
3722 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option> 3762 <option value="Delta:H(4)C(3)O(1) (K)">Delta:H(4)C(3)O(1) (K)</option>
3723 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option> 3763 <option value="Delta:H(4)C(3)O(1) (R)">Delta:H(4)C(3)O(1) (R)</option>
3764 <option value="Delta:H(4)C(3)O(2) (K)">Delta:H(4)C(3)O(2) (K)</option>
3724 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option> 3765 <option value="Delta:H(4)C(5)O(1) (R)">Delta:H(4)C(5)O(1) (R)</option>
3725 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option> 3766 <option value="Delta:H(4)C(6) (K)">Delta:H(4)C(6) (K)</option>
3726 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option> 3767 <option value="Delta:H(5)C(2) (P)">Delta:H(5)C(2) (P)</option>
3727 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option> 3768 <option value="Delta:H(6)C(3)O(1) (C)">Delta:H(6)C(3)O(1) (C)</option>
3728 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> 3769 <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option>
4291 <option value="Ethanolamine (D)">Ethanolamine (D)</option> 4332 <option value="Ethanolamine (D)">Ethanolamine (D)</option>
4292 <option value="Ethanolamine (E)">Ethanolamine (E)</option> 4333 <option value="Ethanolamine (E)">Ethanolamine (E)</option>
4293 <option value="Ethanolyl (C)">Ethanolyl (C)</option> 4334 <option value="Ethanolyl (C)">Ethanolyl (C)</option>
4294 <option value="Ethanolyl (K)">Ethanolyl (K)</option> 4335 <option value="Ethanolyl (K)">Ethanolyl (K)</option>
4295 <option value="Ethanolyl (R)">Ethanolyl (R)</option> 4336 <option value="Ethanolyl (R)">Ethanolyl (R)</option>
4296 <option value="Ethoxyformyl (H)">Ethoxyformyl (H)</option>
4297 <option value="Ethyl (C-term)">Ethyl (C-term)</option> 4337 <option value="Ethyl (C-term)">Ethyl (C-term)</option>
4298 <option value="Ethyl (D)">Ethyl (D)</option> 4338 <option value="Ethyl (D)">Ethyl (D)</option>
4299 <option value="Ethyl (E)">Ethyl (E)</option> 4339 <option value="Ethyl (E)">Ethyl (E)</option>
4300 <option value="Ethyl (K)">Ethyl (K)</option> 4340 <option value="Ethyl (K)">Ethyl (K)</option>
4301 <option value="Ethyl (N-term)">Ethyl (N-term)</option> 4341 <option value="Ethyl (N-term)">Ethyl (N-term)</option>
4385 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option> 4425 <option value="Gln-&gt;Tyr (Q)">Gln-&gt;Tyr (Q)</option>
4386 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option> 4426 <option value="Gln-&gt;Val (Q)">Gln-&gt;Val (Q)</option>
4387 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option> 4427 <option value="Gln-&gt;Xle (Q)">Gln-&gt;Xle (Q)</option>
4388 <option value="Glu (E)">Glu (E)</option> 4428 <option value="Glu (E)">Glu (E)</option>
4389 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option> 4429 <option value="Glu (Protein C-term)">Glu (Protein C-term)</option>
4430 <option value="Glu+O(2) (H)">Glu+O(2) (H)</option>
4390 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option> 4431 <option value="Glu-&gt;Ala (E)">Glu-&gt;Ala (E)</option>
4391 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option> 4432 <option value="Glu-&gt;Arg (E)">Glu-&gt;Arg (E)</option>
4392 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option> 4433 <option value="Glu-&gt;Asn (E)">Glu-&gt;Asn (E)</option>
4393 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option> 4434 <option value="Glu-&gt;Asp (E)">Glu-&gt;Asp (E)</option>
4394 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option> 4435 <option value="Glu-&gt;Cys (E)">Glu-&gt;Cys (E)</option>
4399 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option> 4440 <option value="Glu-&gt;Met (E)">Glu-&gt;Met (E)</option>
4400 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option> 4441 <option value="Glu-&gt;Phe (E)">Glu-&gt;Phe (E)</option>
4401 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option> 4442 <option value="Glu-&gt;Pro (E)">Glu-&gt;Pro (E)</option>
4402 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option> 4443 <option value="Glu-&gt;pyro-Glu (N-term E)">Glu-&gt;pyro-Glu (N-term E)</option>
4403 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option> 4444 <option value="Glu-&gt;pyro-Glu+Methyl (N-term E)">Glu-&gt;pyro-Glu+Methyl (N-term E)</option>
4404 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C (N-term E)</option>
4405 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> 4445 <option value="Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu-&gt;pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option>
4406 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option> 4446 <option value="Glu-&gt;Ser (E)">Glu-&gt;Ser (E)</option>
4407 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option> 4447 <option value="Glu-&gt;Thr (E)">Glu-&gt;Thr (E)</option>
4408 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option> 4448 <option value="Glu-&gt;Trp (E)">Glu-&gt;Trp (E)</option>
4409 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option> 4449 <option value="Glu-&gt;Tyr (E)">Glu-&gt;Tyr (E)</option>
4423 <option value="Gluratylation (K)">Gluratylation (K)</option> 4463 <option value="Gluratylation (K)">Gluratylation (K)</option>
4424 <option value="Glutathione (C)">Glutathione (C)</option> 4464 <option value="Glutathione (C)">Glutathione (C)</option>
4425 <option value="Gly (K)">Gly (K)</option> 4465 <option value="Gly (K)">Gly (K)</option>
4426 <option value="Gly (S)">Gly (S)</option> 4466 <option value="Gly (S)">Gly (S)</option>
4427 <option value="Gly (T)">Gly (T)</option> 4467 <option value="Gly (T)">Gly (T)</option>
4468 <option value="Gly+O(2) (H)">Gly+O(2) (H)</option>
4428 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option> 4469 <option value="Gly-&gt;Ala (G)">Gly-&gt;Ala (G)</option>
4429 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option> 4470 <option value="Gly-&gt;Arg (G)">Gly-&gt;Arg (G)</option>
4430 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option> 4471 <option value="Gly-&gt;Asn (G)">Gly-&gt;Asn (G)</option>
4431 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option> 4472 <option value="Gly-&gt;Asp (G)">Gly-&gt;Asp (G)</option>
4432 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option> 4473 <option value="Gly-&gt;Cys (G)">Gly-&gt;Cys (G)</option>
4813 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option> 4854 <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option>
4814 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> 4855 <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option>
4815 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> 4856 <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option>
4816 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> 4857 <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option>
4817 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> 4858 <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option>
4859 <option value="Hex(6)HexNAc(5)NeuAc(3) (N)">Hex(6)HexNAc(5)NeuAc(3) (N)</option>
4818 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> 4860 <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option>
4819 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> 4861 <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option>
4820 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> 4862 <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option>
4821 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> 4863 <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option>
4822 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> 4864 <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option>
4824 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> 4866 <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option>
4825 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> 4867 <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option>
4826 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> 4868 <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option>
4827 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> 4869 <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option>
4828 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> 4870 <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option>
4871 <option value="Hex(7)HexNAc(6) (N)">Hex(7)HexNAc(6) (N)</option>
4872 <option value="Hex(7)HexNAc(6) (S)">Hex(7)HexNAc(6) (S)</option>
4873 <option value="Hex(7)HexNAc(6) (T)">Hex(7)HexNAc(6) (T)</option>
4829 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> 4874 <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option>
4830 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> 4875 <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option>
4831 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> 4876 <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option>
4832 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> 4877 <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option>
4833 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> 4878 <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option>
4879 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> 4924 <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option>
4880 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> 4925 <option value="HexNAc(4) (S)">HexNAc(4) (S)</option>
4881 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> 4926 <option value="HexNAc(4) (T)">HexNAc(4) (T)</option>
4882 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> 4927 <option value="HexNAc(5) (S)">HexNAc(5) (S)</option>
4883 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> 4928 <option value="HexNAc(5) (T)">HexNAc(5) (T)</option>
4929 <option value="His+O(2) (H)">His+O(2) (H)</option>
4884 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option> 4930 <option value="His-&gt;Ala (H)">His-&gt;Ala (H)</option>
4885 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option> 4931 <option value="His-&gt;Arg (H)">His-&gt;Arg (H)</option>
4886 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option> 4932 <option value="His-&gt;Asn (H)">His-&gt;Asn (H)</option>
4887 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option> 4933 <option value="His-&gt;Asp (H)">His-&gt;Asp (H)</option>
4888 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option> 4934 <option value="His-&gt;Cys (H)">His-&gt;Cys (H)</option>
5016 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option> 5062 <option value="iTRAQ8plex (Y)">iTRAQ8plex (Y)</option>
5017 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option> 5063 <option value="iTRAQ8plex:13C(6)15N(2) (C)">iTRAQ8plex:13C(6)15N(2) (C)</option>
5018 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option> 5064 <option value="iTRAQ8plex:13C(6)15N(2) (K)">iTRAQ8plex:13C(6)15N(2) (K)</option>
5019 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option> 5065 <option value="iTRAQ8plex:13C(6)15N(2) (N-term)">iTRAQ8plex:13C(6)15N(2) (N-term)</option>
5020 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option> 5066 <option value="iTRAQ8plex:13C(6)15N(2) (Y)">iTRAQ8plex:13C(6)15N(2) (Y)</option>
5067 <option value="Kdo (S)">Kdo (S)</option>
5068 <option value="Kdo (T)">Kdo (T)</option>
5021 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> 5069 <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option>
5022 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> 5070 <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option>
5023 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> 5071 <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option>
5024 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> 5072 <option value="Label:13C(3) (A)">Label:13C(3) (A)</option>
5025 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> 5073 <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option>
5074 <option value="Label:13C(3)15N(1) (S)">Label:13C(3)15N(1) (S)</option>
5026 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> 5075 <option value="Label:13C(4) (M)">Label:13C(4) (M)</option>
5027 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option> 5076 <option value="Label:13C(4)+Oxidation (M)">Label:13C(4)+Oxidation (M)</option>
5028 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option> 5077 <option value="Label:13C(4)15N(1) (D)">Label:13C(4)15N(1) (D)</option>
5029 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option> 5078 <option value="Label:13C(4)15N(2)+GG (K)">Label:13C(4)15N(2)+GG (K)</option>
5030 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option> 5079 <option value="Label:13C(5) (P)">Label:13C(5) (P)</option>
5105 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option> 5154 <option value="LG-Hlactam-K (Protein N-term)">LG-Hlactam-K (Protein N-term)</option>
5106 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option> 5155 <option value="LG-Hlactam-R (R)">LG-Hlactam-R (R)</option>
5107 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option> 5156 <option value="LG-lactam-K (K)">LG-lactam-K (K)</option>
5108 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option> 5157 <option value="LG-lactam-K (Protein N-term)">LG-lactam-K (Protein N-term)</option>
5109 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option> 5158 <option value="LG-lactam-R (R)">LG-lactam-R (R)</option>
5159 <option value="LG-pyrrole (C)">LG-pyrrole (C)</option>
5110 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> 5160 <option value="LG-pyrrole (K)">LG-pyrrole (K)</option>
5111 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> 5161 <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option>
5112 <option value="Lipoyl (K)">Lipoyl (K)</option> 5162 <option value="Lipoyl (K)">Lipoyl (K)</option>
5113 <option value="LRGG (K)">LRGG (K)</option> 5163 <option value="LRGG (K)">LRGG (K)</option>
5114 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> 5164 <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option>
5115 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> 5165 <option value="LRGG+methyl (K)">LRGG+methyl (K)</option>
5166 <option value="LTX+Lophotoxin (Y)">LTX+Lophotoxin (Y)</option>
5116 <option value="Lys (N-term)">Lys (N-term)</option> 5167 <option value="Lys (N-term)">Lys (N-term)</option>
5168 <option value="Lys+O(2) (H)">Lys+O(2) (H)</option>
5117 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option> 5169 <option value="Lys-&gt;Ala (K)">Lys-&gt;Ala (K)</option>
5118 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option> 5170 <option value="Lys-&gt;Allysine (K)">Lys-&gt;Allysine (K)</option>
5119 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option> 5171 <option value="Lys-&gt;AminoadipicAcid (K)">Lys-&gt;AminoadipicAcid (K)</option>
5120 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option> 5172 <option value="Lys-&gt;Arg (K)">Lys-&gt;Arg (K)</option>
5121 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option> 5173 <option value="Lys-&gt;Asn (K)">Lys-&gt;Asn (K)</option>
5146 <option value="maleimide5 (C)">maleimide5 (C)</option> 5198 <option value="maleimide5 (C)">maleimide5 (C)</option>
5147 <option value="maleimide5 (K)">maleimide5 (K)</option> 5199 <option value="maleimide5 (K)">maleimide5 (K)</option>
5148 <option value="Malonyl (C)">Malonyl (C)</option> 5200 <option value="Malonyl (C)">Malonyl (C)</option>
5149 <option value="Malonyl (K)">Malonyl (K)</option> 5201 <option value="Malonyl (K)">Malonyl (K)</option>
5150 <option value="Malonyl (S)">Malonyl (S)</option> 5202 <option value="Malonyl (S)">Malonyl (S)</option>
5203 <option value="MBS+peptide (C)">MBS+peptide (C)</option>
5151 <option value="MDCC (C)">MDCC (C)</option> 5204 <option value="MDCC (C)">MDCC (C)</option>
5152 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option> 5205 <option value="MeMePhosphorothioate (S)">MeMePhosphorothioate (S)</option>
5153 <option value="Menadione (C)">Menadione (C)</option> 5206 <option value="Menadione (C)">Menadione (C)</option>
5154 <option value="Menadione (K)">Menadione (K)</option> 5207 <option value="Menadione (K)">Menadione (K)</option>
5155 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option> 5208 <option value="Menadione-HQ (C)">Menadione-HQ (C)</option>
5157 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option> 5210 <option value="MercaptoEthanol (S)">MercaptoEthanol (S)</option>
5158 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option> 5211 <option value="MercaptoEthanol (T)">MercaptoEthanol (T)</option>
5159 <option value="MesitylOxide (H)">MesitylOxide (H)</option> 5212 <option value="MesitylOxide (H)">MesitylOxide (H)</option>
5160 <option value="MesitylOxide (K)">MesitylOxide (K)</option> 5213 <option value="MesitylOxide (K)">MesitylOxide (K)</option>
5161 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option> 5214 <option value="MesitylOxide (Protein N-term)">MesitylOxide (Protein N-term)</option>
5215 <option value="Met+O(2) (H)">Met+O(2) (H)</option>
5162 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option> 5216 <option value="Met-&gt;Aha (M)">Met-&gt;Aha (M)</option>
5163 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option> 5217 <option value="Met-&gt;Ala (M)">Met-&gt;Ala (M)</option>
5164 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option> 5218 <option value="Met-&gt;Arg (M)">Met-&gt;Arg (M)</option>
5165 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option> 5219 <option value="Met-&gt;Asn (M)">Met-&gt;Asn (M)</option>
5166 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option> 5220 <option value="Met-&gt;Asp (M)">Met-&gt;Asp (M)</option>
5340 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option> 5394 <option value="Nmethylmaleimide (C)">Nmethylmaleimide (C)</option>
5341 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option> 5395 <option value="Nmethylmaleimide (K)">Nmethylmaleimide (K)</option>
5342 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option> 5396 <option value="Nmethylmaleimide+water (C)">Nmethylmaleimide+water (C)</option>
5343 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> 5397 <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option>
5344 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> 5398 <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option>
5345 <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option>
5346 <option value="NP40 (N-term)">NP40 (N-term)</option> 5399 <option value="NP40 (N-term)">NP40 (N-term)</option>
5347 <option value="NQIGG (K)">NQIGG (K)</option> 5400 <option value="NQIGG (K)">NQIGG (K)</option>
5348 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option> 5401 <option value="O-Dimethylphosphate (S)">O-Dimethylphosphate (S)</option>
5349 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option> 5402 <option value="O-Dimethylphosphate (T)">O-Dimethylphosphate (T)</option>
5350 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option> 5403 <option value="O-Dimethylphosphate (Y)">O-Dimethylphosphate (Y)</option>
5428 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option> 5481 <option value="Phe-&gt;Thr (F)">Phe-&gt;Thr (F)</option>
5429 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option> 5482 <option value="Phe-&gt;Trp (F)">Phe-&gt;Trp (F)</option>
5430 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option> 5483 <option value="Phe-&gt;Tyr (F)">Phe-&gt;Tyr (F)</option>
5431 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option> 5484 <option value="Phe-&gt;Val (F)">Phe-&gt;Val (F)</option>
5432 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option> 5485 <option value="Phe-&gt;Xle (F)">Phe-&gt;Xle (F)</option>
5486 <option value="phenyl-phosphate (K)">phenyl-phosphate (K)</option>
5487 <option value="phenyl-phosphate (S)">phenyl-phosphate (S)</option>
5488 <option value="phenyl-phosphate (T)">phenyl-phosphate (T)</option>
5489 <option value="phenyl-phosphate (Y)">phenyl-phosphate (Y)</option>
5433 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option> 5490 <option value="Phenylisocyanate (N-term)">Phenylisocyanate (N-term)</option>
5434 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option> 5491 <option value="Phenylisocyanate:2H(5) (N-term)">Phenylisocyanate:2H(5) (N-term)</option>
5435 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option> 5492 <option value="phenylsulfonylethyl (C)">phenylsulfonylethyl (C)</option>
5436 <option value="Phospho (C)">Phospho (C)</option> 5493 <option value="Phospho (C)">Phospho (C)</option>
5437 <option value="Phospho (D)">Phospho (D)</option> 5494 <option value="Phospho (D)">Phospho (D)</option>
5442 <option value="Phospho (S)">Phospho (S)</option> 5499 <option value="Phospho (S)">Phospho (S)</option>
5443 <option value="Phospho (T)">Phospho (T)</option> 5500 <option value="Phospho (T)">Phospho (T)</option>
5444 <option value="Phospho (Y)">Phospho (Y)</option> 5501 <option value="Phospho (Y)">Phospho (Y)</option>
5445 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option> 5502 <option value="Phosphoadenosine (H)">Phosphoadenosine (H)</option>
5446 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option> 5503 <option value="Phosphoadenosine (K)">Phosphoadenosine (K)</option>
5504 <option value="Phosphoadenosine (S)">Phosphoadenosine (S)</option>
5447 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option> 5505 <option value="Phosphoadenosine (T)">Phosphoadenosine (T)</option>
5448 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option> 5506 <option value="Phosphoadenosine (Y)">Phosphoadenosine (Y)</option>
5449 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option> 5507 <option value="PhosphoCytidine (S)">PhosphoCytidine (S)</option>
5450 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option> 5508 <option value="PhosphoCytidine (T)">PhosphoCytidine (T)</option>
5451 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option> 5509 <option value="PhosphoCytidine (Y)">PhosphoCytidine (Y)</option>
5473 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option> 5531 <option value="Phycocyanobilin (C)">Phycocyanobilin (C)</option>
5474 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option> 5532 <option value="Phycoerythrobilin (C)">Phycoerythrobilin (C)</option>
5475 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option> 5533 <option value="Phytochromobilin (C)">Phytochromobilin (C)</option>
5476 <option value="Piperidine (K)">Piperidine (K)</option> 5534 <option value="Piperidine (K)">Piperidine (K)</option>
5477 <option value="Piperidine (N-term)">Piperidine (N-term)</option> 5535 <option value="Piperidine (N-term)">Piperidine (N-term)</option>
5536 <option value="Pro+O(2) (H)">Pro+O(2) (H)</option>
5478 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option> 5537 <option value="Pro-&gt;Ala (P)">Pro-&gt;Ala (P)</option>
5479 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option> 5538 <option value="Pro-&gt;Arg (P)">Pro-&gt;Arg (P)</option>
5480 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option> 5539 <option value="Pro-&gt;Asn (P)">Pro-&gt;Asn (P)</option>
5481 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option> 5540 <option value="Pro-&gt;Asp (P)">Pro-&gt;Asp (P)</option>
5482 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option> 5541 <option value="Pro-&gt;Cys (P)">Pro-&gt;Cys (P)</option>
5550 <option value="QEQTGG (K)">QEQTGG (K)</option> 5609 <option value="QEQTGG (K)">QEQTGG (K)</option>
5551 <option value="QQQTGG (K)">QQQTGG (K)</option> 5610 <option value="QQQTGG (K)">QQQTGG (K)</option>
5552 <option value="QTGG (K)">QTGG (K)</option> 5611 <option value="QTGG (K)">QTGG (K)</option>
5553 <option value="Quinone (W)">Quinone (W)</option> 5612 <option value="Quinone (W)">Quinone (W)</option>
5554 <option value="Quinone (Y)">Quinone (Y)</option> 5613 <option value="Quinone (Y)">Quinone (Y)</option>
5614 <option value="RBS-ID_Uridine (A)">RBS-ID_Uridine (A)</option>
5615 <option value="RBS-ID_Uridine (C)">RBS-ID_Uridine (C)</option>
5616 <option value="RBS-ID_Uridine (D)">RBS-ID_Uridine (D)</option>
5617 <option value="RBS-ID_Uridine (E)">RBS-ID_Uridine (E)</option>
5618 <option value="RBS-ID_Uridine (F)">RBS-ID_Uridine (F)</option>
5619 <option value="RBS-ID_Uridine (G)">RBS-ID_Uridine (G)</option>
5620 <option value="RBS-ID_Uridine (H)">RBS-ID_Uridine (H)</option>
5621 <option value="RBS-ID_Uridine (I)">RBS-ID_Uridine (I)</option>
5622 <option value="RBS-ID_Uridine (K)">RBS-ID_Uridine (K)</option>
5623 <option value="RBS-ID_Uridine (L)">RBS-ID_Uridine (L)</option>
5624 <option value="RBS-ID_Uridine (M)">RBS-ID_Uridine (M)</option>
5625 <option value="RBS-ID_Uridine (N)">RBS-ID_Uridine (N)</option>
5626 <option value="RBS-ID_Uridine (P)">RBS-ID_Uridine (P)</option>
5627 <option value="RBS-ID_Uridine (Q)">RBS-ID_Uridine (Q)</option>
5628 <option value="RBS-ID_Uridine (R)">RBS-ID_Uridine (R)</option>
5629 <option value="RBS-ID_Uridine (S)">RBS-ID_Uridine (S)</option>
5630 <option value="RBS-ID_Uridine (T)">RBS-ID_Uridine (T)</option>
5631 <option value="RBS-ID_Uridine (V)">RBS-ID_Uridine (V)</option>
5632 <option value="RBS-ID_Uridine (W)">RBS-ID_Uridine (W)</option>
5633 <option value="RBS-ID_Uridine (Y)">RBS-ID_Uridine (Y)</option>
5555 <option value="Retinylidene (K)">Retinylidene (K)</option> 5634 <option value="Retinylidene (K)">Retinylidene (K)</option>
5556 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> 5635 <option value="RNPXL (N-term K)">RNPXL (N-term K)</option>
5557 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> 5636 <option value="RNPXL (N-term R)">RNPXL (N-term R)</option>
5558 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> 5637 <option value="RNPXlink1 (C)">RNPXlink1 (C)</option>
5559 <option value="RNPXlink2 (F)">RNPXlink2 (F)</option>
5560 <option value="RNPXlink2 (K)">RNPXlink2 (K)</option>
5561 <option value="RNPXlink2 (L)">RNPXlink2 (L)</option>
5562 <option value="RNPXlink3 (C)">RNPXlink3 (C)</option>
5563 <option value="RNPXlink3 (F)">RNPXlink3 (F)</option>
5564 <option value="RNPXlink4 (C)">RNPXlink4 (C)</option>
5565 <option value="RNPXlink5 (F)">RNPXlink5 (F)</option>
5566 <option value="RNPXlink5 (Y)">RNPXlink5 (Y)</option>
5567 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> 5638 <option value="s-GlcNAc (S)">s-GlcNAc (S)</option>
5568 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> 5639 <option value="s-GlcNAc (T)">s-GlcNAc (T)</option>
5569 <option value="Saligenin (H)">Saligenin (H)</option> 5640 <option value="Saligenin (H)">Saligenin (H)</option>
5570 <option value="Saligenin (K)">Saligenin (K)</option> 5641 <option value="Saligenin (K)">Saligenin (K)</option>
5571 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option> 5642 <option value="Ser-&gt;Ala (S)">Ser-&gt;Ala (S)</option>
5589 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option> 5660 <option value="Ser-&gt;Xle (S)">Ser-&gt;Xle (S)</option>
5590 <option value="serotonylation (Q)">serotonylation (Q)</option> 5661 <option value="serotonylation (Q)">serotonylation (Q)</option>
5591 <option value="shTMT (K)">shTMT (K)</option> 5662 <option value="shTMT (K)">shTMT (K)</option>
5592 <option value="shTMT (N-term)">shTMT (N-term)</option> 5663 <option value="shTMT (N-term)">shTMT (N-term)</option>
5593 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option> 5664 <option value="shTMT (Protein N-term)">shTMT (Protein N-term)</option>
5665 <option value="shTMTpro (K)">shTMTpro (K)</option>
5666 <option value="shTMTpro (N-term)">shTMTpro (N-term)</option>
5667 <option value="shTMTpro (Protein N-term)">shTMTpro (Protein N-term)</option>
5594 <option value="SMA (K)">SMA (K)</option> 5668 <option value="SMA (K)">SMA (K)</option>
5595 <option value="SMA (N-term)">SMA (N-term)</option> 5669 <option value="SMA (N-term)">SMA (N-term)</option>
5596 <option value="spermidine (Q)">spermidine (Q)</option> 5670 <option value="spermidine (Q)">spermidine (Q)</option>
5597 <option value="spermine (Q)">spermine (Q)</option> 5671 <option value="spermine (Q)">spermine (Q)</option>
5598 <option value="SPITC (K)">SPITC (K)</option> 5672 <option value="SPITC (K)">SPITC (K)</option>
5764 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option> 5838 <option value="Tyr-&gt;Ser (Y)">Tyr-&gt;Ser (Y)</option>
5765 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option> 5839 <option value="Tyr-&gt;Thr (Y)">Tyr-&gt;Thr (Y)</option>
5766 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option> 5840 <option value="Tyr-&gt;Trp (Y)">Tyr-&gt;Trp (Y)</option>
5767 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option> 5841 <option value="Tyr-&gt;Val (Y)">Tyr-&gt;Val (Y)</option>
5768 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option> 5842 <option value="Tyr-&gt;Xle (Y)">Tyr-&gt;Xle (Y)</option>
5769 <option value="Ub-amide (C)">Ub-amide (C)</option>
5770 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option> 5843 <option value="Ub-Br2 (C)">Ub-Br2 (C)</option>
5771 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option> 5844 <option value="Ub-fluorescein (C)">Ub-fluorescein (C)</option>
5772 <option value="Ub-VME (C)">Ub-VME (C)</option> 5845 <option value="Ub-VME (C)">Ub-VME (C)</option>
5773 <option value="UgiJoullie (D)">UgiJoullie (D)</option> 5846 <option value="UgiJoullie (D)">UgiJoullie (D)</option>
5774 <option value="UgiJoullie (E)">UgiJoullie (E)</option> 5847 <option value="UgiJoullie (E)">UgiJoullie (E)</option>
5959 <option value="ZGB (K)">ZGB (K)</option> 6032 <option value="ZGB (K)">ZGB (K)</option>
5960 <option value="ZGB (N-term)">ZGB (N-term)</option> 6033 <option value="ZGB (N-term)">ZGB (N-term)</option>
5961 <option value="ZQG (K)">ZQG (K)</option> 6034 <option value="ZQG (K)">ZQG (K)</option>
5962 <expand macro="list_string_san" name="variable"/> 6035 <expand macro="list_string_san" name="variable"/>
5963 </param> 6036 </param>
5964 <param name="variable_max_per_peptide" argument="-modifications:variable_max_per_peptide" type="integer" optional="true" value="2" label="Maximum number of residues carrying a variable modification per candidate peptide" help=""/> 6037 <param name="variable_max_per_peptide" argument="-modifications:variable_max_per_peptide" type="integer" value="2" label="Maximum number of residues carrying a variable modification per candidate peptide" help=""/>
5965 </section> 6038 </section>
5966 <expand macro="adv_opts_macro"> 6039 <expand macro="adv_opts_macro">
5967 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> 6040 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
5968 <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 6041 <param argument="-test" type="hidden" value="False" label="Enables the test mode (needed for internal use only)" help="" optional="true">
5969 <expand macro="list_string_san" name="test"/> 6042 <expand macro="list_string_san" name="test"/>
5970 </param> 6043 </param>
5971 </expand> 6044 </expand>
5972 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> 6045 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
5973 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 6046 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
5979 </collection> 6052 </collection>
5980 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd"> 6053 <data name="ctd_out" format="xml" label="${tool.name} on ${on_string}: ctd">
5981 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> 6054 <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter>
5982 </data> 6055 </data>
5983 </outputs> 6056 </outputs>
5984 <tests><!-- TOPP_SpecLibSearcher_1 --> 6057 <tests>
6058 <!-- TOPP_SpecLibSearcher_1 -->
5985 <test expect_num_outputs="2"> 6059 <test expect_num_outputs="2">
5986 <section name="adv_opts"> 6060 <section name="adv_opts">
5987 <param name="force" value="false"/> 6061 <param name="force" value="false"/>
5988 <param name="test" value="true"/> 6062 <param name="test" value="true"/>
5989 </section> 6063 </section>
6011 <param name="min_peaks" value="5"/> 6085 <param name="min_peaks" value="5"/>
6012 <param name="max_peaks" value="150"/> 6086 <param name="max_peaks" value="150"/>
6013 <param name="cut_peaks_below" value="1000"/> 6087 <param name="cut_peaks_below" value="1000"/>
6014 </section> 6088 </section>
6015 <section name="modifications"> 6089 <section name="modifications">
6016 <param name="fixed"/>
6017 <param name="variable"/>
6018 <param name="variable_max_per_peptide" value="2"/> 6090 <param name="variable_max_per_peptide" value="2"/>
6019 </section> 6091 </section>
6020 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/> 6092 <param name="OPTIONAL_OUTPUTS" value="ctd_out_FLAG"/>
6021 <output name="ctd_out" ftype="xml"> 6093 <output name="ctd_out" ftype="xml">
6022 <assert_contents> 6094 <assert_contents>
6023 <is_valid_xml/> 6095 <is_valid_xml/>
6024 </assert_contents> 6096 </assert_contents>
6025 </output> 6097 </output>
6098 <assert_stdout>
6099 <has_text_matching expression="@EXECUTABLE@ took .* \(wall\), .* \(CPU\), .* \(system\), .* \(user\)(; Peak Memory Usage: 32 MB)?."/>
6100 </assert_stdout>
6026 </test> 6101 </test>
6027 </tests> 6102 </tests>
6028 <help><![CDATA[Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library. 6103 <help><![CDATA[Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library.
6029 6104
6030 6105
6031 For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/TOPP_SpecLibSearcher.html]]></help> 6106 For more information, visit https://openms.de/doxygen/release/3.1.0/html/TOPP_SpecLibSearcher.html]]></help>
6032 <expand macro="references"/> 6107 <expand macro="references"/>
6033 </tool> 6108 </tool>