Mercurial > repos > galaxyp > openms_speclibsearcher
comparison test-data/MzMLSplitter_output_part2.mzML @ 1:b7fa0190a8c6 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author | galaxyp |
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date | Tue, 20 Mar 2018 14:41:44 -0400 |
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0:74b171c7cd1d | 1:b7fa0190a8c6 |
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1 <?xml version="1.0" encoding="ISO-8859-1"?> | |
2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd"> | |
3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0"> | |
4 <cvList count="5"> | |
5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/> | |
6 <cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/> | |
7 <cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/> | |
8 <cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/> | |
9 <cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/> | |
10 </cvList> | |
11 <fileDescription> | |
12 <fileContent> | |
13 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" /> | |
14 </fileContent> | |
15 <contact> | |
16 <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value=", " /> | |
17 <cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="" /> | |
18 </contact> | |
19 </fileDescription> | |
20 <sampleList count="1"> | |
21 <sample id="sa_0" name=""> | |
22 <cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0" unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" /> | |
23 <cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="0" unitAccession="UO:0000098" unitName="milliliter" unitCvRef="UO" /> | |
24 <cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" /> | |
25 </sample> | |
26 </sampleList> | |
27 <softwareList count="4"> | |
28 <software id="so_in_0" version="" > | |
29 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> | |
30 </software> | |
31 <software id="so_default" version="" > | |
32 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> | |
33 </software> | |
34 <software id="so_dp_sp_0_pm_0" version="" > | |
35 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" /> | |
36 </software> | |
37 <software id="so_dp_sp_0_pm_1" version="version_string" > | |
38 <cvParam cvRef="MS" accession="MS:1000756" name="FileConverter" /> | |
39 </software> | |
40 </softwareList> | |
41 <instrumentConfigurationList count="1"> | |
42 <instrumentConfiguration id="ic_0"> | |
43 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" /> | |
44 <componentList count="3"> | |
45 <source order="0"> | |
46 <cvParam cvRef="MS" accession="MS:1000008" name="ionization type" /> | |
47 </source> | |
48 <analyzer order="0"> | |
49 <cvParam cvRef="MS" accession="MS:1000014" name="accuracy" value="0" unitAccession="UO:0000169" unitName="parts per million" unitCvRef="UO" /> | |
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51 <cvParam cvRef="MS" accession="MS:1000024" name="final MS exponent" value="0" /> | |
52 <cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="0" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO" /> | |
53 <cvParam cvRef="MS" accession="MS:1000443" name="mass analyzer type" /> | |
54 </analyzer> | |
55 <detector order="0"> | |
56 <cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="0" /> | |
57 <cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="0" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO" /> | |
58 <cvParam cvRef="MS" accession="MS:1000026" name="detector type" /> | |
59 </detector> | |
60 </componentList> | |
61 <softwareRef ref="so_in_0" /> | |
62 </instrumentConfiguration> | |
63 </instrumentConfigurationList> | |
64 <dataProcessingList count="1"> | |
65 <dataProcessing id="dp_sp_0"> | |
66 <processingMethod order="0" softwareRef="so_dp_sp_0_pm_0"> | |
67 <cvParam cvRef="MS" accession="MS:1000543" name="data processing action" /> | |
68 </processingMethod> | |
69 <processingMethod order="0" softwareRef="so_dp_sp_0_pm_1"> | |
70 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" /> | |
71 <cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" /> | |
72 <userParam name="parameter: mode" type="xsd:string" value="test_mode"/> | |
73 </processingMethod> | |
74 </dataProcessing> | |
75 </dataProcessingList> | |
76 <run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0"> | |
77 <spectrumList count="5" defaultDataProcessingRef="dp_sp_0"> | |
78 <spectrum id="spectrum=6" index="0" defaultArrayLength="885" dataProcessingRef="dp_sp_0"> | |
79 <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" /> | |
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81 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" /> | |
82 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" /> | |
83 <scanList count="1"> | |
84 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" /> | |
85 <scan > | |
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87 </scan> | |
88 </scanList> | |
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