Mercurial > repos > galaxyp > openms_spectrafilterbernnorm
view SpectraFilterBernNorm.xml @ 3:ac57f61af510 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit d4b74e94ddabaccec6b1c5f9540d074c39207600
author | galaxyp |
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date | Sat, 28 Oct 2017 05:32:36 -0400 |
parents | 99a07bdc86f3 |
children | e253f64ae49f |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Identification]--> <tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="2.2.0"> <description>Applies thresholdfilter to peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterBernNorm</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>SpectraFilterBernNorm #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_algorithm_threshold: -algorithm:threshold $param_algorithm_threshold #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #if $adv_opts.param_algorithm_C1: -algorithm:C1 $adv_opts.param_algorithm_C1 #end if #if $adv_opts.param_algorithm_C2: -algorithm:C2 $adv_opts.param_algorithm_C2 #end if #end if </command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> <param name="param_algorithm_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization" help="(-threshold) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> <param name="param_algorithm_C1" type="float" value="28.0" label="C1 value of the normalization" help="(-C1) "/> <param name="param_algorithm_C2" type="float" value="400.0" label="C2 value of the normalization" help="(-C2) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>Applies thresholdfilter to peak spectra. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterBernNorm.html</help> </tool>