Mercurial > repos > galaxyp > openms_spectrafilternlargest
diff SpectraFilterNLargest.xml @ 13:948d3b4988e4 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author | galaxyp |
---|---|
date | Thu, 01 Dec 2022 19:14:06 +0000 |
parents | 94e8fba2995e |
children | 503e18eb2596 |
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--- a/SpectraFilterNLargest.xml Fri Nov 06 20:33:48 2020 +0000 +++ b/SpectraFilterNLargest.xml Thu Dec 01 19:14:06 2022 +0000 @@ -1,13 +1,11 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Identification]--> -<tool id="SpectraFilterNLargest" name="SpectraFilterNLargest" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@" profile="20.05"> +<tool id="SpectraFilterNLargest" name="SpectraFilterNLargest" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> <description>Applies thresholdfilter to peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterNLargest</token> <import>macros.xml</import> - <import>macros_autotest.xml</import> - <import>macros_test.xml</import> </macros> <expand macro="requirements"/> <expand macro="stdio"/> @@ -41,14 +39,14 @@ <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> </configfiles> <inputs> - <param name="in" argument="-in" type="data" format="mzml" optional="false" label="input file" help=" select mzml data sets(s)"/> + <param argument="-in" type="data" format="mzml" optional="false" label="input file" help=" select mzml data sets(s)"/> <section name="algorithm" title="Algorithm parameter subsection" help="" expanded="false"> <param name="n" argument="-algorithm:n" type="integer" optional="true" value="200" label="The number of peaks to keep" help=""/> </section> <expand macro="adv_opts_macro"> - <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> - <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> - <expand macro="list_string_san"/> + <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> + <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> + <expand macro="list_string_san" name="test"/> </param> </expand> <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> @@ -61,13 +59,15 @@ <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter> </data> </outputs> - <tests> - <expand macro="autotest_SpectraFilterNLargest"/> - <expand macro="manutest_SpectraFilterNLargest"/> - </tests> + <tests><test expect_num_outputs="1"><!-- copy pasted from autotest_SpectraFilterWindowMower (1st test) and autogenrated output --> + <param name="adv_opts|test" value="true"/> + <param name="in" value="SpectraFilterSqrtMower_1_input.mzML"/> + <output name="out" value="SpectraFilterNLargest.mzML" compare="sim_size"/> + </test> +</tests> <help><![CDATA[Applies thresholdfilter to peak spectra. -For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_SpectraFilterNLargest.html]]></help> +For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/TOPP_SpectraFilterNLargest.html]]></help> <expand macro="references"/> </tool>